data_3S3V # _model_server_result.job_id xh8vaYv4G-7DrLoQQi_WWg _model_server_result.datetime_utc '2024-11-08 15:09:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":193}' # _entry.id 3S3V # _exptl.entry_id 3S3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETHOPRIM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S3V _cell.length_a 84.688 _cell.length_b 84.688 _cell.length_c 78.743 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 H N N # _chem_comp.formula 'C14 H18 N4 O3' _chem_comp.formula_weight 290.318 _chem_comp.id TOP _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETHOPRIM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 TOP doub 310 n y C1 C8 TOP sing 311 n y C1 H1 TOP sing 312 n n N2 C3 TOP sing 313 n y C3 N4 TOP sing 314 n n C3 N5 TOP doub 315 n y N4 HN41 TOP sing 316 n n N4 HN42 TOP sing 317 n n N5 C6 TOP sing 318 n y C6 N7 TOP sing 319 n n C6 C8 TOP doub 320 n y N7 HN71 TOP sing 321 n n N7 HN72 TOP sing 322 n n C8 C9 TOP sing 323 n n C9 C10 TOP sing 324 n n C9 H91 TOP sing 325 n n C9 H92 TOP sing 326 n n C10 C11 TOP doub 327 n y C10 C21 TOP sing 328 n y C11 C12 TOP sing 329 n y C11 H11 TOP sing 330 n n C12 O13 TOP sing 331 n n C12 C15 TOP doub 332 n y O13 C14 TOP sing 333 n n C14 H141 TOP sing 334 n n C14 H142 TOP sing 335 n n C14 H143 TOP sing 336 n n C15 O16 TOP sing 337 n n C15 C18 TOP sing 338 n y O16 C17 TOP sing 339 n n C17 H171 TOP sing 340 n n C17 H172 TOP sing 341 n n C17 H173 TOP sing 342 n n C18 O19 TOP sing 343 n n C18 C21 TOP doub 344 n y O19 C20 TOP sing 345 n n C20 H201 TOP sing 346 n n C20 H202 TOP sing 347 n n C20 H203 TOP sing 348 n n C21 H21 TOP sing 349 n n # _atom_sites.entry_id 3S3V _atom_sites.fract_transf_matrix[1][1] 0.011808 _atom_sites.fract_transf_matrix[1][2] 0.006817 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOP A 1 187 187 TOP TOP . C 3 SO4 A 1 188 188 SO4 SO4 . D 3 SO4 A 1 189 189 SO4 SO4 . E 3 SO4 A 1 190 190 SO4 SO4 . F 3 SO4 A 1 191 191 SO4 SO4 . G 3 SO4 A 1 192 192 SO4 SO4 . H 2 TOP A 1 193 190 TOP TOP . I 4 HOH A 1 194 1 HOH HOH . I 4 HOH A 2 195 2 HOH HOH . I 4 HOH A 3 196 3 HOH HOH . I 4 HOH A 4 197 4 HOH HOH . I 4 HOH A 5 198 5 HOH HOH . I 4 HOH A 6 199 6 HOH HOH . I 4 HOH A 7 200 7 HOH HOH . I 4 HOH A 8 201 8 HOH HOH . I 4 HOH A 9 202 9 HOH HOH . I 4 HOH A 10 203 10 HOH HOH . I 4 HOH A 11 204 11 HOH HOH . I 4 HOH A 12 205 12 HOH HOH . I 4 HOH A 13 206 13 HOH HOH . I 4 HOH A 14 207 14 HOH HOH . I 4 HOH A 15 208 15 HOH HOH . I 4 HOH A 16 209 16 HOH HOH . I 4 HOH A 17 210 18 HOH HOH . I 4 HOH A 18 211 19 HOH HOH . I 4 HOH A 19 212 20 HOH HOH . I 4 HOH A 20 213 21 HOH HOH . I 4 HOH A 21 214 22 HOH HOH . I 4 HOH A 22 215 23 HOH HOH . I 4 HOH A 23 216 25 HOH HOH . I 4 HOH A 24 217 26 HOH HOH . I 4 HOH A 25 218 27 HOH HOH . I 4 HOH A 26 219 28 HOH HOH . I 4 HOH A 27 220 29 HOH HOH . I 4 HOH A 28 221 30 HOH HOH . I 4 HOH A 29 222 32 HOH HOH . I 4 HOH A 30 223 36 HOH HOH . I 4 HOH A 31 224 37 HOH HOH . I 4 HOH A 32 225 38 HOH HOH . I 4 HOH A 33 226 39 HOH HOH . I 4 HOH A 34 227 40 HOH HOH . I 4 HOH A 35 228 41 HOH HOH . I 4 HOH A 36 229 42 HOH HOH . I 4 HOH A 37 230 43 HOH HOH . I 4 HOH A 38 231 44 HOH HOH . I 4 HOH A 39 232 45 HOH HOH . I 4 HOH A 40 233 46 HOH HOH . I 4 HOH A 41 234 47 HOH HOH . I 4 HOH A 42 235 48 HOH HOH . I 4 HOH A 43 236 49 HOH HOH . I 4 HOH A 44 237 50 HOH HOH . I 4 HOH A 45 238 51 HOH HOH . I 4 HOH A 46 239 52 HOH HOH . I 4 HOH A 47 240 53 HOH HOH . I 4 HOH A 48 241 54 HOH HOH . I 4 HOH A 49 242 55 HOH HOH . I 4 HOH A 50 243 57 HOH HOH . I 4 HOH A 51 244 58 HOH HOH . I 4 HOH A 52 245 59 HOH HOH . I 4 HOH A 53 246 60 HOH HOH . I 4 HOH A 54 247 61 HOH HOH . I 4 HOH A 55 248 62 HOH HOH . I 4 HOH A 56 249 64 HOH HOH . I 4 HOH A 57 250 65 HOH HOH . I 4 HOH A 58 251 66 HOH HOH . I 4 HOH A 59 252 67 HOH HOH . I 4 HOH A 60 253 68 HOH HOH . I 4 HOH A 61 254 69 HOH HOH . I 4 HOH A 62 255 70 HOH HOH . I 4 HOH A 63 256 71 HOH HOH . I 4 HOH A 64 257 72 HOH HOH . I 4 HOH A 65 258 73 HOH HOH . I 4 HOH A 66 259 74 HOH HOH . I 4 HOH A 67 260 75 HOH HOH . I 4 HOH A 68 261 76 HOH HOH . I 4 HOH A 69 262 77 HOH HOH . I 4 HOH A 70 263 78 HOH HOH . I 4 HOH A 71 264 79 HOH HOH . I 4 HOH A 72 265 80 HOH HOH . I 4 HOH A 73 266 81 HOH HOH . I 4 HOH A 74 267 82 HOH HOH . I 4 HOH A 75 268 84 HOH HOH . I 4 HOH A 76 269 85 HOH HOH . I 4 HOH A 77 270 86 HOH HOH . I 4 HOH A 78 271 87 HOH HOH . I 4 HOH A 79 272 88 HOH HOH . I 4 HOH A 80 273 90 HOH HOH . I 4 HOH A 81 274 91 HOH HOH . I 4 HOH A 82 275 92 HOH HOH . I 4 HOH A 83 276 93 HOH HOH . I 4 HOH A 84 277 94 HOH HOH . I 4 HOH A 85 278 95 HOH HOH . I 4 HOH A 86 279 96 HOH HOH . I 4 HOH A 87 280 97 HOH HOH . I 4 HOH A 88 281 98 HOH HOH . I 4 HOH A 89 282 99 HOH HOH . I 4 HOH A 90 283 100 HOH HOH . I 4 HOH A 91 284 101 HOH HOH . I 4 HOH A 92 285 102 HOH HOH . I 4 HOH A 93 286 103 HOH HOH . I 4 HOH A 94 287 104 HOH HOH . I 4 HOH A 95 288 105 HOH HOH . I 4 HOH A 96 289 106 HOH HOH . I 4 HOH A 97 290 107 HOH HOH . I 4 HOH A 98 291 108 HOH HOH . I 4 HOH A 99 292 109 HOH HOH . I 4 HOH A 100 293 110 HOH HOH . I 4 HOH A 101 294 111 HOH HOH . I 4 HOH A 102 295 112 HOH HOH . I 4 HOH A 103 296 113 HOH HOH . I 4 HOH A 104 297 114 HOH HOH . I 4 HOH A 105 298 115 HOH HOH . I 4 HOH A 106 299 116 HOH HOH . I 4 HOH A 107 300 117 HOH HOH . I 4 HOH A 108 301 118 HOH HOH . I 4 HOH A 109 302 119 HOH HOH . I 4 HOH A 110 303 120 HOH HOH . I 4 HOH A 111 304 121 HOH HOH . I 4 HOH A 112 305 123 HOH HOH . I 4 HOH A 113 306 124 HOH HOH . I 4 HOH A 114 307 125 HOH HOH . I 4 HOH A 115 308 126 HOH HOH . I 4 HOH A 116 309 127 HOH HOH . I 4 HOH A 117 310 128 HOH HOH . I 4 HOH A 118 311 129 HOH HOH . I 4 HOH A 119 312 130 HOH HOH . I 4 HOH A 120 313 131 HOH HOH . I 4 HOH A 121 314 132 HOH HOH . I 4 HOH A 122 315 133 HOH HOH . I 4 HOH A 123 316 134 HOH HOH . I 4 HOH A 124 317 135 HOH HOH . I 4 HOH A 125 318 136 HOH HOH . I 4 HOH A 126 319 137 HOH HOH . I 4 HOH A 127 320 138 HOH HOH . I 4 HOH A 128 321 139 HOH HOH . I 4 HOH A 129 322 140 HOH HOH . I 4 HOH A 130 323 141 HOH HOH . I 4 HOH A 131 324 142 HOH HOH . I 4 HOH A 132 325 143 HOH HOH . I 4 HOH A 133 326 144 HOH HOH . I 4 HOH A 134 327 145 HOH HOH . I 4 HOH A 135 328 146 HOH HOH . I 4 HOH A 136 329 147 HOH HOH . I 4 HOH A 137 330 148 HOH HOH . I 4 HOH A 138 331 149 HOH HOH . I 4 HOH A 139 332 150 HOH HOH . I 4 HOH A 140 333 151 HOH HOH . I 4 HOH A 141 334 152 HOH HOH . I 4 HOH A 142 335 153 HOH HOH . I 4 HOH A 143 336 154 HOH HOH . I 4 HOH A 144 337 155 HOH HOH . I 4 HOH A 145 338 156 HOH HOH . I 4 HOH A 146 339 157 HOH HOH . I 4 HOH A 147 340 158 HOH HOH . I 4 HOH A 148 341 159 HOH HOH . I 4 HOH A 149 342 160 HOH HOH . I 4 HOH A 150 343 161 HOH HOH . I 4 HOH A 151 344 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOP . . . H 2 7.301 -0.572 -0.146 0.5 20.12 ? C1 TOP 193 A 1 HETATM 2 N N2 TOP . . . H 2 6.033 -0.435 -0.493 0.5 19.09 ? N2 TOP 193 A 1 HETATM 3 C C3 TOP . . . H 2 5.563 -0.711 -1.735 0.5 22.6 ? C3 TOP 193 A 1 HETATM 4 N N4 TOP . . . H 2 4.252 -0.486 -1.968 0.5 23.87 ? N4 TOP 193 A 1 HETATM 5 N N5 TOP . . . H 2 6.381 -1.159 -2.721 0.5 20.87 ? N5 TOP 193 A 1 HETATM 6 C C6 TOP . . . H 2 7.691 -1.405 -2.42 0.5 16.48 ? C6 TOP 193 A 1 HETATM 7 N N7 TOP . . . H 2 8.563 -1.887 -3.343 0.5 17.67 ? N7 TOP 193 A 1 HETATM 8 C C8 TOP . . . H 2 8.201 -1.043 -1.061 0.5 17.75 ? C8 TOP 193 A 1 HETATM 9 C C9 TOP . . . H 2 9.658 -1.206 -0.661 0.5 18.04 ? C9 TOP 193 A 1 HETATM 10 C C10 TOP . . . H 2 10.26 0.138 -1.134 0.5 18.29 ? C10 TOP 193 A 1 HETATM 11 C C11 TOP . . . H 2 11.337 0.003 -1.962 0.5 14.12 ? C11 TOP 193 A 1 HETATM 12 C C12 TOP . . . H 2 11.971 1.089 -2.556 0.5 15.21 ? C12 TOP 193 A 1 HETATM 13 O O13 TOP . . . H 2 13.007 0.953 -3.402 0.5 13.74 ? O13 TOP 193 A 1 HETATM 14 C C14 TOP . . . H 2 13.348 -0.278 -4.015 0.5 16.25 ? C14 TOP 193 A 1 HETATM 15 C C15 TOP . . . H 2 11.502 2.432 -2.195 0.5 15.57 ? C15 TOP 193 A 1 HETATM 16 O O16 TOP . . . H 2 12.167 3.481 -2.782 0.5 16.67 ? O16 TOP 193 A 1 HETATM 17 C C17 TOP . . . H 2 13.462 3.696 -2.217 0.5 18.05 ? C17 TOP 193 A 1 HETATM 18 C C18 TOP . . . H 2 10.357 2.582 -1.288 0.5 16.46 ? C18 TOP 193 A 1 HETATM 19 O O19 TOP . . . H 2 9.915 3.883 -1.044 0.5 15.13 ? O19 TOP 193 A 1 HETATM 20 C C20 TOP . . . H 2 10.185 4.597 -2.254 0.5 21.92 ? C20 TOP 193 A 1 HETATM 21 C C21 TOP . . . H 2 9.755 1.41 -0.78 0.5 19.24 ? C21 TOP 193 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #