data_3S3X # _model_server_result.job_id pzQ_h9d7NBWLsl5u0AxcCA _model_server_result.datetime_utc '2024-11-21 18:56:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":465}' # _entry.id 3S3X # _exptl.entry_id 3S3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.81 _cell.angle_gamma 90 _cell.entry_id 3S3X _cell.length_a 232.396 _cell.length_b 109.442 _cell.length_c 127.269 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 90 A CYS 94 1_555 A SG CYS 191 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 169 A CYS 173 1_555 A SG CYS 176 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 287 A CYS 291 1_555 A SG CYS 362 A CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 305 A CYS 309 1_555 A SG CYS 358 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 309 A CYS 313 1_555 A SG CYS 356 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 318 A CYS 322 1_555 A SG CYS 340 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 320 A CYS 324 1_555 A SG CYS 332 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 90 B CYS 94 1_555 B SG CYS 191 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 169 B CYS 173 1_555 B SG CYS 176 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 287 B CYS 291 1_555 B SG CYS 362 B CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 305 B CYS 309 1_555 B SG CYS 358 B CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 B SG CYS 309 B CYS 313 1_555 B SG CYS 356 B CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 B SG CYS 318 B CYS 322 1_555 B SG CYS 340 B CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 320 B CYS 324 1_555 B SG CYS 332 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 C SG CYS 90 C CYS 94 1_555 C SG CYS 191 C CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 C SG CYS 169 C CYS 173 1_555 C SG CYS 176 C CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 C SG CYS 287 C CYS 291 1_555 C SG CYS 362 C CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 C SG CYS 305 C CYS 309 1_555 C SG CYS 358 C CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 C SG CYS 309 C CYS 313 1_555 C SG CYS 356 C CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf20 C SG CYS 318 C CYS 322 1_555 C SG CYS 340 C CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 C SG CYS 320 C CYS 324 1_555 C SG CYS 332 C CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 D SG CYS 2 D CYS 3 1_555 D SG CYS 17 D CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 D SG CYS 9 D CYS 10 1_555 D SG CYS 22 D CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf24 D SG CYS 16 D CYS 17 1_555 D SG CYS 32 D CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf25 E SG CYS 2 E CYS 3 1_555 E SG CYS 17 E CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf26 E SG CYS 9 E CYS 10 1_555 E SG CYS 22 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf27 E SG CYS 16 E CYS 17 1_555 E SG CYS 32 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf28 F SG CYS 2 F CYS 3 1_555 F SG CYS 17 F CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf29 F SG CYS 9 F CYS 10 1_555 F SG CYS 22 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf30 F SG CYS 16 F CYS 17 1_555 F SG CYS 32 F CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 363 A ASN 367 1_555 G C1 NAG . A NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 390 A ASN 394 1_555 H C1 NAG . A NAG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 B ND2 ASN 363 B ASN 367 1_555 M C1 NAG . B NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 390 B ASN 394 1_555 N C1 NAG . B NAG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C ND2 ASN 363 C ASN 367 1_555 O C1 NAG . C NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 C ND2 ASN 390 C ASN 394 1_555 P C1 NAG . C NAG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 J K K . A K 2 1_555 A OD2 ASP 256 A ASP 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc2 J K K . A K 2 1_555 A OE1 GLU 310 A GLU 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.468 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 3S3X _atom_sites.fract_transf_matrix[1][1] 0.004303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002465 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 600 600 NAG NAG . H 3 NAG A 1 700 700 NAG NAG . I 4 K A 1 1 1 K K . J 4 K A 1 2 2 K K . K 5 CL A 1 464 1 CL CL . L 6 SO4 A 1 465 1 SO4 SO4 . M 3 NAG B 1 600 600 NAG NAG . N 3 NAG B 1 700 700 NAG NAG . O 3 NAG C 1 600 600 NAG NAG . P 3 NAG C 1 700 700 NAG NAG . Q 7 HOH A 1 4 4 HOH HOH . Q 7 HOH A 2 466 2 HOH HOH . Q 7 HOH A 3 467 5 HOH HOH . Q 7 HOH A 4 468 14 HOH HOH . R 7 HOH B 1 464 7 HOH HOH . R 7 HOH B 2 465 10 HOH HOH . R 7 HOH B 3 466 11 HOH HOH . S 7 HOH C 1 1 1 HOH HOH . S 7 HOH C 2 464 6 HOH HOH . S 7 HOH C 3 465 8 HOH HOH . S 7 HOH C 4 466 9 HOH HOH . S 7 HOH C 5 467 12 HOH HOH . S 7 HOH C 6 468 13 HOH HOH . T 7 HOH E 1 39 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . L 6 61.99 24.629 40.062 1 126.08 ? S SO4 465 A 1 HETATM 2 O O1 SO4 . . . L 6 63.132 23.753 40.441 1 187.51 ? O1 SO4 465 A 1 HETATM 3 O O2 SO4 . . . L 6 62.157 25.299 38.734 1 193.35 ? O2 SO4 465 A 1 HETATM 4 O O3 SO4 . . . L 6 60.773 23.774 39.924 1 234 ? O3 SO4 465 A 1 HETATM 5 O O4 SO4 . . . L 6 61.872 25.655 41.135 1 225.29 ? O4 SO4 465 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #