data_3S3X
#
_model_server_result.job_id            Ax2WiuheHGj78Uhl6aqiIQ 
_model_server_result.datetime_utc      '2024-11-21 18:35:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":600}' 
#
_entry.id    3S3X 
#
_exptl.entry_id    3S3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.81 
_cell.angle_gamma         90 
_cell.entry_id            3S3X 
_cell.length_a            232.396 
_cell.length_b            109.442 
_cell.length_c            127.269 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 90 A CYS 94 1_555 A SG CYS 191 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 169 A CYS 173 1_555 A SG CYS 176 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 287 A CYS 291 1_555 A SG CYS 362 A CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 305 A CYS 309 1_555 A SG CYS 358 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 A SG CYS 309 A CYS 313 1_555 A SG CYS 356 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 A SG CYS 318 A CYS 322 1_555 A SG CYS 340 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 A SG CYS 320 A CYS 324 1_555 A SG CYS 332 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 B SG CYS 90 B CYS 94 1_555 B SG CYS 191 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 B SG CYS 169 B CYS 173 1_555 B SG CYS 176 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 287 B CYS 291 1_555 B SG CYS 362 B CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 B SG CYS 305 B CYS 309 1_555 B SG CYS 358 B CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 B SG CYS 309 B CYS 313 1_555 B SG CYS 356 B CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 B SG CYS 318 B CYS 322 1_555 B SG CYS 340 B CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 B SG CYS 320 B CYS 324 1_555 B SG CYS 332 B CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf15 C SG CYS 90 C CYS 94 1_555 C SG CYS 191 C CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf16 C SG CYS 169 C CYS 173 1_555 C SG CYS 176 C CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 C SG CYS 287 C CYS 291 1_555 C SG CYS 362 C CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf18 C SG CYS 305 C CYS 309 1_555 C SG CYS 358 C CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf19 C SG CYS 309 C CYS 313 1_555 C SG CYS 356 C CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf20 C SG CYS 318 C CYS 322 1_555 C SG CYS 340 C CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf21 C SG CYS 320 C CYS 324 1_555 C SG CYS 332 C CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf22 D SG CYS 2 D CYS 3 1_555 D SG CYS 17 D CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf23 D SG CYS 9 D CYS 10 1_555 D SG CYS 22 D CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf24 D SG CYS 16 D CYS 17 1_555 D SG CYS 32 D CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf25 E SG CYS 2 E CYS 3 1_555 E SG CYS 17 E CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf26 E SG CYS 9 E CYS 10 1_555 E SG CYS 22 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf27 E SG CYS 16 E CYS 17 1_555 E SG CYS 32 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf28 F SG CYS 2 F CYS 3 1_555 F SG CYS 17 F CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf29 F SG CYS 9 F CYS 10 1_555 F SG CYS 22 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf30 F SG CYS 16 F CYS 17 1_555 F SG CYS 32 F CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 363 A ASN 367 1_555 G C1 NAG . A NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 A ND2 ASN 390 A ASN 394 1_555 H C1 NAG . A NAG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 B ND2 ASN 363 B ASN 367 1_555 M C1 NAG . B NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 B ND2 ASN 390 B ASN 394 1_555 N C1 NAG . B NAG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 C ND2 ASN 363 C ASN 367 1_555 O C1 NAG . C NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale6 C ND2 ASN 390 C ASN 394 1_555 P C1 NAG . C NAG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
metalc ? metalc1 J K K . A K 2 1_555 A OD2 ASP 256 A ASP 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? 
metalc ? metalc2 J K K . A K 2 1_555 A OE1 GLU 310 A GLU 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.468 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3S3X 
_atom_sites.fract_transf_matrix[1][1]    0.004303 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002465 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009137 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAG A 1 600 600 NAG NAG . 
H 3 NAG A 1 700 700 NAG NAG . 
I 4 K A 1 1 1 K K . 
J 4 K A 1 2 2 K K . 
K 5 CL A 1 464 1 CL CL . 
L 6 SO4 A 1 465 1 SO4 SO4 . 
M 3 NAG B 1 600 600 NAG NAG . 
N 3 NAG B 1 700 700 NAG NAG . 
O 3 NAG C 1 600 600 NAG NAG . 
P 3 NAG C 1 700 700 NAG NAG . 
Q 7 HOH A 1 4 4 HOH HOH . 
Q 7 HOH A 2 466 2 HOH HOH . 
Q 7 HOH A 3 467 5 HOH HOH . 
Q 7 HOH A 4 468 14 HOH HOH . 
R 7 HOH B 1 464 7 HOH HOH . 
R 7 HOH B 2 465 10 HOH HOH . 
R 7 HOH B 3 466 11 HOH HOH . 
S 7 HOH C 1 1 1 HOH HOH . 
S 7 HOH C 2 464 6 HOH HOH . 
S 7 HOH C 3 465 8 HOH HOH . 
S 7 HOH C 4 466 9 HOH HOH . 
S 7 HOH C 5 467 12 HOH HOH . 
S 7 HOH C 6 468 13 HOH HOH . 
T 7 HOH E 1 39 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . O 3 53.745 -12.256 45.843 1 162.96 ? C1 NAG 600 C 1 
HETATM 2 C C2 NAG . . . O 3 52.889 -11.776 47.007 1 142 ? C2 NAG 600 C 1 
HETATM 3 C C3 NAG . . . O 3 53.366 -10.417 47.497 1 155.14 ? C3 NAG 600 C 1 
HETATM 4 C C4 NAG . . . O 3 54.86 -10.465 47.787 1 166.72 ? C4 NAG 600 C 1 
HETATM 5 C C5 NAG . . . O 3 55.643 -11.067 46.622 1 167.58 ? C5 NAG 600 C 1 
HETATM 6 C C6 NAG . . . O 3 57.101 -11.24 47.019 1 151.22 ? C6 NAG 600 C 1 
HETATM 7 C C7 NAG . . . O 3 50.595 -12.543 47.141 1 126.32 ? C7 NAG 600 C 1 
HETATM 8 C C8 NAG . . . O 3 49.186 -12.399 46.647 1 89.95 ? C8 NAG 600 C 1 
HETATM 9 N N2 NAG . . . O 3 51.494 -11.715 46.616 1 117.39 ? N2 NAG 600 C 1 
HETATM 10 O O3 NAG . . . O 3 52.673 -10.066 48.673 1 150.86 ? O3 NAG 600 C 1 
HETATM 11 O O4 NAG . . . O 3 55.331 -9.159 48.032 1 156.06 ? O4 NAG 600 C 1 
HETATM 12 O O5 NAG . . . O 3 55.101 -12.317 46.235 1 170.28 ? O5 NAG 600 C 1 
HETATM 13 O O6 NAG . . . O 3 57.917 -11.19 45.867 1 132.15 ? O6 NAG 600 C 1 
HETATM 14 O O7 NAG . . . O 3 50.879 -13.391 47.986 1 132.93 ? O7 NAG 600 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#