data_3S43 # _model_server_result.job_id E3WGrFRoZXscQtNqhQ0Trw _model_server_result.datetime_utc '2024-11-24 08:35:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":532}' # _entry.id 3S43 # _exptl.entry_id 3S43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S43 _cell.length_a 58.374 _cell.length_b 86.565 _cell.length_c 46.306 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 V N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 201 n n C1 C2 GOL sing 202 n n C1 H11 GOL sing 203 n n C1 H12 GOL sing 204 n n O1 HO1 GOL sing 205 n n C2 O2 GOL sing 206 n n C2 C3 GOL sing 207 n n C2 H2 GOL sing 208 n n O2 HO2 GOL sing 209 n n C3 O3 GOL sing 210 n n C3 H31 GOL sing 211 n n C3 H32 GOL sing 212 n n O3 HO3 GOL sing 213 n n # _atom_sites.entry_id 3S43 _atom_sites.fract_transf_matrix[1][1] 0.017131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 478 A 1 401 401 478 478 . D 4 IOD A 1 502 502 IOD IOD . E 4 IOD A 1 504 504 IOD IOD . F 4 IOD A 1 508 508 IOD IOD . G 4 IOD A 1 510 510 IOD IOD . H 4 IOD A 1 514 514 IOD IOD . I 4 IOD A 1 515 515 IOD IOD . J 4 IOD A 1 516 516 IOD IOD . K 4 IOD A 1 518 518 IOD IOD . L 5 GOL A 1 532 532 GOL GOL . M 4 IOD B 1 501 501 IOD IOD . N 4 IOD B 1 503 503 IOD IOD . O 4 IOD B 1 505 505 IOD IOD . P 4 IOD B 1 506 506 IOD IOD . Q 4 IOD B 1 507 507 IOD IOD . R 4 IOD B 1 511 511 IOD IOD . S 4 IOD B 1 512 512 IOD IOD . T 4 IOD B 1 513 513 IOD IOD . U 4 IOD B 1 517 517 IOD IOD . V 5 GOL B 1 531 531 GOL GOL . W 6 HOH A 1 1001 1001 HOH HOH . W 6 HOH A 2 1004 1004 HOH HOH . W 6 HOH A 3 1005 1005 HOH HOH . W 6 HOH A 4 1007 1007 HOH HOH . W 6 HOH A 5 1009 1009 HOH HOH . W 6 HOH A 6 1010 1010 HOH HOH . W 6 HOH A 7 1017 1017 HOH HOH . W 6 HOH A 8 1019 1019 HOH HOH . W 6 HOH A 9 1021 1021 HOH HOH . W 6 HOH A 10 1022 1022 HOH HOH . W 6 HOH A 11 1023 1023 HOH HOH . W 6 HOH A 12 1024 1024 HOH HOH . W 6 HOH A 13 1026 1026 HOH HOH . W 6 HOH A 14 1029 1029 HOH HOH . W 6 HOH A 15 1030 1030 HOH HOH . W 6 HOH A 16 1034 1034 HOH HOH . W 6 HOH A 17 1035 1035 HOH HOH . W 6 HOH A 18 1037 1037 HOH HOH . W 6 HOH A 19 1038 1038 HOH HOH . W 6 HOH A 20 1039 1039 HOH HOH . W 6 HOH A 21 1040 1040 HOH HOH . W 6 HOH A 22 1041 1041 HOH HOH . W 6 HOH A 23 1042 1042 HOH HOH . W 6 HOH A 24 1043 1043 HOH HOH . W 6 HOH A 25 1044 1044 HOH HOH . W 6 HOH A 26 1045 1045 HOH HOH . W 6 HOH A 27 1048 1048 HOH HOH . W 6 HOH A 28 1053 1053 HOH HOH . W 6 HOH A 29 1056 1056 HOH HOH . W 6 HOH A 30 1057 1057 HOH HOH . W 6 HOH A 31 1058 1058 HOH HOH . W 6 HOH A 32 1064 1064 HOH HOH . W 6 HOH A 33 1068 1068 HOH HOH . W 6 HOH A 34 1069 1069 HOH HOH . W 6 HOH A 35 1070 1070 HOH HOH . W 6 HOH A 36 1073 1073 HOH HOH . W 6 HOH A 37 1075 1075 HOH HOH . W 6 HOH A 38 1079 1079 HOH HOH . W 6 HOH A 39 1083 1083 HOH HOH . W 6 HOH A 40 1084 1084 HOH HOH . W 6 HOH A 41 1085 1085 HOH HOH . W 6 HOH A 42 1087 1087 HOH HOH . W 6 HOH A 43 1090 1090 HOH HOH . W 6 HOH A 44 1092 1092 HOH HOH . W 6 HOH A 45 1093 1093 HOH HOH . W 6 HOH A 46 1098 1098 HOH HOH . W 6 HOH A 47 1100 1100 HOH HOH . W 6 HOH A 48 1102 1102 HOH HOH . W 6 HOH A 49 1105 1105 HOH HOH . W 6 HOH A 50 1112 1112 HOH HOH . W 6 HOH A 51 1113 1113 HOH HOH . W 6 HOH A 52 1119 1119 HOH HOH . W 6 HOH A 53 1127 1127 HOH HOH . W 6 HOH A 54 1128 1128 HOH HOH . W 6 HOH A 55 1133 1133 HOH HOH . W 6 HOH A 56 1134 1134 HOH HOH . W 6 HOH A 57 1135 1135 HOH HOH . X 6 HOH B 1 1002 1002 HOH HOH . X 6 HOH B 2 1003 1003 HOH HOH . X 6 HOH B 3 1006 1006 HOH HOH . X 6 HOH B 4 1008 1008 HOH HOH . X 6 HOH B 5 1011 1011 HOH HOH . X 6 HOH B 6 1012 1012 HOH HOH . X 6 HOH B 7 1013 1013 HOH HOH . X 6 HOH B 8 1014 1014 HOH HOH . X 6 HOH B 9 1015 1015 HOH HOH . X 6 HOH B 10 1016 1016 HOH HOH . X 6 HOH B 11 1018 1018 HOH HOH . X 6 HOH B 12 1020 1020 HOH HOH . X 6 HOH B 13 1025 1025 HOH HOH . X 6 HOH B 14 1027 1027 HOH HOH . X 6 HOH B 15 1028 1028 HOH HOH . X 6 HOH B 16 1031 1031 HOH HOH . X 6 HOH B 17 1032 1032 HOH HOH . X 6 HOH B 18 1033 1033 HOH HOH . X 6 HOH B 19 1046 1046 HOH HOH . X 6 HOH B 20 1047 1047 HOH HOH . X 6 HOH B 21 1049 1049 HOH HOH . X 6 HOH B 22 1050 1050 HOH HOH . X 6 HOH B 23 1051 1051 HOH HOH . X 6 HOH B 24 1052 1052 HOH HOH . X 6 HOH B 25 1054 1054 HOH HOH . X 6 HOH B 26 1055 1055 HOH HOH . X 6 HOH B 27 1059 1059 HOH HOH . X 6 HOH B 28 1060 1060 HOH HOH . X 6 HOH B 29 1061 1061 HOH HOH . X 6 HOH B 30 1062 1062 HOH HOH . X 6 HOH B 31 1063 1063 HOH HOH . X 6 HOH B 32 1065 1065 HOH HOH . X 6 HOH B 33 1066 1066 HOH HOH . X 6 HOH B 34 1067 1067 HOH HOH . X 6 HOH B 35 1071 1071 HOH HOH . X 6 HOH B 36 1072 1072 HOH HOH . X 6 HOH B 37 1074 1074 HOH HOH . X 6 HOH B 38 1076 1076 HOH HOH . X 6 HOH B 39 1077 1077 HOH HOH . X 6 HOH B 40 1078 1078 HOH HOH . X 6 HOH B 41 1080 1080 HOH HOH . X 6 HOH B 42 1081 1081 HOH HOH . X 6 HOH B 43 1082 1082 HOH HOH . X 6 HOH B 44 1086 1086 HOH HOH . X 6 HOH B 45 1088 1088 HOH HOH . X 6 HOH B 46 1089 1089 HOH HOH . X 6 HOH B 47 1091 1091 HOH HOH . X 6 HOH B 48 1094 1094 HOH HOH . X 6 HOH B 49 1097 1097 HOH HOH . X 6 HOH B 50 1101 1101 HOH HOH . X 6 HOH B 51 1103 1103 HOH HOH . X 6 HOH B 52 1104 1104 HOH HOH . X 6 HOH B 53 1106 1106 HOH HOH . X 6 HOH B 54 1107 1107 HOH HOH . X 6 HOH B 55 1109 1109 HOH HOH . X 6 HOH B 56 1111 1111 HOH HOH . X 6 HOH B 57 1115 1115 HOH HOH . X 6 HOH B 58 1116 1116 HOH HOH . X 6 HOH B 59 1118 1118 HOH HOH . X 6 HOH B 60 1120 1120 HOH HOH . X 6 HOH B 61 1122 1122 HOH HOH . X 6 HOH B 62 1123 1123 HOH HOH . X 6 HOH B 63 1124 1124 HOH HOH . X 6 HOH B 64 1125 1125 HOH HOH . X 6 HOH B 65 1126 1126 HOH HOH . X 6 HOH B 66 1129 1129 HOH HOH . X 6 HOH B 67 1130 1130 HOH HOH . X 6 HOH B 68 1132 1132 HOH HOH . X 6 HOH B 69 1136 1136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 5 26.078 40.921 1.582 1 42.45 ? C1 GOL 532 A 1 HETATM 2 O O1 GOL . . . L 5 25.61 42.25 1.883 1 44.14 ? O1 GOL 532 A 1 HETATM 3 C C2 GOL . . . L 5 24.885 40.054 1.602 1 38.52 ? C2 GOL 532 A 1 HETATM 4 O O2 GOL . . . L 5 23.64 40.509 1.168 1 43.21 ? O2 GOL 532 A 1 HETATM 5 C C3 GOL . A . L 5 25.002 38.548 1.528 0.6 36.92 ? C3 GOL 532 A 1 HETATM 6 C C3 GOL . B . L 5 25.061 38.565 1.562 0.4 36.41 ? C3 GOL 532 A 1 HETATM 7 O O3 GOL . A . L 5 23.993 38.084 0.605 0.6 34.12 ? O3 GOL 532 A 1 HETATM 8 O O3 GOL . B . L 5 26.125 38.135 2.407 0.4 25.55 ? O3 GOL 532 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #