data_3S45 # _model_server_result.job_id mS99R9fQ7wH53bD6eTz5Mw _model_server_result.datetime_utc '2024-11-14 05:52:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3S45 # _exptl.entry_id 3S45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.66 _cell.angle_gamma 90 _cell.entry_id 3S45 _cell.length_a 105.998 _cell.length_b 30.986 _cell.length_c 56.161 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 41 A ASN 41 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 A OE1 GLU 65 A GLU 65 1_555 I ZN ZN . A ZN 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc3 A OD2 ASP 79 A ASP 79 1_555 H ZN ZN . A ZN 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc4 A O LEU 99 A LEU 99 1_555 G ZN ZN . A ZN 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc5 C NA NA . A NA 501 1_555 Z O HOH . A HOH 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc6 C NA NA . A NA 501 1_555 Z O HOH . A HOH 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 E N3 IMD . A IMD 524 1_555 G ZN ZN . A ZN 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc8 F N3 IMD . A IMD 526 1_555 I ZN ZN . A ZN 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc9 G ZN ZN . A ZN 533 1_555 Z O HOH . A HOH 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc10 I ZN ZN . A ZN 536 1_555 Z O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc11 B OE2 GLU 21 B GLU 21 1_555 V ZN ZN . B ZN 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc12 B OD2 ASP 30 B ASP 30 1_555 W ZN ZN . B ZN 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc13 B OE1 GLU 65 B GLU 65 1_555 Y ZN ZN . B ZN 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? metalc ? metalc14 R N3 IMD . B IMD 521 1_555 V ZN ZN . B ZN 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc15 S N3 IMD . B IMD 522 1_555 V ZN ZN . B ZN 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? metalc ? metalc16 T N3 IMD . B IMD 523 1_555 W ZN ZN . B ZN 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc17 U N3 IMD . B IMD 525 1_555 X ZN ZN . B ZN 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc18 Y ZN ZN . B ZN 537 1_555 AA O HOH . B HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc19 Y ZN ZN . B ZN 537 1_555 AA O HOH . B HOH 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3S45 _atom_sites.fract_transf_matrix[1][1] 0.009434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000273 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 501 501 NA NA . D 3 CL A 1 513 513 CL CL . E 4 IMD A 1 524 524 IMD IMD . F 4 IMD A 1 526 526 IMD IMD . G 5 ZN A 1 533 533 ZN ZN . H 5 ZN A 1 535 535 ZN ZN . I 5 ZN A 1 536 536 ZN ZN . J 6 478 B 1 201 201 478 478 . K 3 CL B 1 511 511 CL CL . L 3 CL B 1 512 512 CL CL . M 3 CL B 1 514 514 CL CL . N 3 CL B 1 515 515 CL CL . O 3 CL B 1 516 516 CL CL . P 3 CL B 1 517 517 CL CL . Q 3 CL B 1 518 518 CL CL . R 4 IMD B 1 521 521 IMD IMD . S 4 IMD B 1 522 522 IMD IMD . T 4 IMD B 1 523 523 IMD IMD . U 4 IMD B 1 525 525 IMD IMD . V 5 ZN B 1 531 531 ZN ZN . W 5 ZN B 1 532 532 ZN ZN . X 5 ZN B 1 534 534 ZN ZN . Y 5 ZN B 1 537 537 ZN ZN . Z 7 HOH A 1 1001 1001 HOH HOH . Z 7 HOH A 2 1002 1002 HOH HOH . Z 7 HOH A 3 1011 1011 HOH HOH . Z 7 HOH A 4 1012 1012 HOH HOH . Z 7 HOH A 5 1018 1018 HOH HOH . Z 7 HOH A 6 1020 1020 HOH HOH . Z 7 HOH A 7 1021 1021 HOH HOH . Z 7 HOH A 8 1025 1025 HOH HOH . Z 7 HOH A 9 1026 1026 HOH HOH . Z 7 HOH A 10 1028 1028 HOH HOH . Z 7 HOH A 11 1029 1029 HOH HOH . Z 7 HOH A 12 1030 1030 HOH HOH . Z 7 HOH A 13 1031 1031 HOH HOH . Z 7 HOH A 14 1033 1033 HOH HOH . Z 7 HOH A 15 1035 1035 HOH HOH . Z 7 HOH A 16 1036 1036 HOH HOH . Z 7 HOH A 17 1038 1038 HOH HOH . Z 7 HOH A 18 1040 1040 HOH HOH . Z 7 HOH A 19 1042 1042 HOH HOH . Z 7 HOH A 20 1044 1044 HOH HOH . Z 7 HOH A 21 1046 1046 HOH HOH . Z 7 HOH A 22 1047 1047 HOH HOH . Z 7 HOH A 23 1049 1049 HOH HOH . Z 7 HOH A 24 1050 1050 HOH HOH . Z 7 HOH A 25 1054 1054 HOH HOH . Z 7 HOH A 26 1055 1055 HOH HOH . Z 7 HOH A 27 1056 1056 HOH HOH . Z 7 HOH A 28 1057 1057 HOH HOH . Z 7 HOH A 29 1060 1060 HOH HOH . Z 7 HOH A 30 1062 1062 HOH HOH . Z 7 HOH A 31 1064 1064 HOH HOH . Z 7 HOH A 32 1065 1065 HOH HOH . Z 7 HOH A 33 1067 1067 HOH HOH . Z 7 HOH A 34 1069 1069 HOH HOH . Z 7 HOH A 35 1071 1071 HOH HOH . Z 7 HOH A 36 1074 1074 HOH HOH . Z 7 HOH A 37 1076 1076 HOH HOH . Z 7 HOH A 38 1077 1077 HOH HOH . Z 7 HOH A 39 1080 1080 HOH HOH . Z 7 HOH A 40 1081 1081 HOH HOH . Z 7 HOH A 41 1082 1082 HOH HOH . Z 7 HOH A 42 1083 1083 HOH HOH . Z 7 HOH A 43 1087 1087 HOH HOH . Z 7 HOH A 44 1089 1089 HOH HOH . Z 7 HOH A 45 1093 1093 HOH HOH . Z 7 HOH A 46 1094 1094 HOH HOH . Z 7 HOH A 47 1095 1095 HOH HOH . Z 7 HOH A 48 1096 1096 HOH HOH . Z 7 HOH A 49 1099 1099 HOH HOH . AA 7 HOH B 1 1003 1003 HOH HOH . AA 7 HOH B 2 1004 1004 HOH HOH . AA 7 HOH B 3 1005 1005 HOH HOH . AA 7 HOH B 4 1007 1007 HOH HOH . AA 7 HOH B 5 1008 1008 HOH HOH . AA 7 HOH B 6 1009 1009 HOH HOH . AA 7 HOH B 7 1010 1010 HOH HOH . AA 7 HOH B 8 1013 1013 HOH HOH . AA 7 HOH B 9 1014 1014 HOH HOH . AA 7 HOH B 10 1015 1015 HOH HOH . AA 7 HOH B 11 1016 1016 HOH HOH . AA 7 HOH B 12 1017 1017 HOH HOH . AA 7 HOH B 13 1019 1019 HOH HOH . AA 7 HOH B 14 1022 1022 HOH HOH . AA 7 HOH B 15 1023 1023 HOH HOH . AA 7 HOH B 16 1024 1024 HOH HOH . AA 7 HOH B 17 1027 1027 HOH HOH . AA 7 HOH B 18 1032 1032 HOH HOH . AA 7 HOH B 19 1034 1034 HOH HOH . AA 7 HOH B 20 1037 1037 HOH HOH . AA 7 HOH B 21 1039 1039 HOH HOH . AA 7 HOH B 22 1041 1041 HOH HOH . AA 7 HOH B 23 1043 1043 HOH HOH . AA 7 HOH B 24 1045 1045 HOH HOH . AA 7 HOH B 25 1048 1048 HOH HOH . AA 7 HOH B 26 1051 1051 HOH HOH . AA 7 HOH B 27 1052 1052 HOH HOH . AA 7 HOH B 28 1053 1053 HOH HOH . AA 7 HOH B 29 1058 1058 HOH HOH . AA 7 HOH B 30 1059 1059 HOH HOH . AA 7 HOH B 31 1061 1061 HOH HOH . AA 7 HOH B 32 1063 1063 HOH HOH . AA 7 HOH B 33 1066 1066 HOH HOH . AA 7 HOH B 34 1068 1068 HOH HOH . AA 7 HOH B 35 1070 1070 HOH HOH . AA 7 HOH B 36 1072 1072 HOH HOH . AA 7 HOH B 37 1073 1073 HOH HOH . AA 7 HOH B 38 1075 1075 HOH HOH . AA 7 HOH B 39 1078 1078 HOH HOH . AA 7 HOH B 40 1079 1079 HOH HOH . AA 7 HOH B 41 1084 1084 HOH HOH . AA 7 HOH B 42 1085 1085 HOH HOH . AA 7 HOH B 43 1086 1086 HOH HOH . AA 7 HOH B 44 1088 1088 HOH HOH . AA 7 HOH B 45 1090 1090 HOH HOH . AA 7 HOH B 46 1091 1091 HOH HOH . AA 7 HOH B 47 1092 1092 HOH HOH . AA 7 HOH B 48 1097 1097 HOH HOH . AA 7 HOH B 49 1098 1098 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.977 _atom_site.Cartn_y 5.761 _atom_site.Cartn_z 24.848 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #