data_3S4K
#
_model_server_result.job_id            hFECk2XbUUIyDaljrQLPdg 
_model_server_result.datetime_utc      '2025-07-30 12:06:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s4k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":142}' 
#
_entry.id    3S4K 
#
_exptl.entry_id    3S4K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.76 
_cell.angle_gamma         90 
_cell.entry_id            3S4K 
_cell.length_a            41.722 
_cell.length_b            50.642 
_cell.length_c            60.506 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S4K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 
A,C,D,E,F,G,M 3 1,2 
B,H,I,J,K,L,N 3 3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 38.808487 0 60.435813 
3 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 0 50.642 0 
4 'crystal symmetry operation' 2_666 -x+1,y+1,-z+1 -1 0 0 0 1 0 0 0 -1 38.808487 50.642 60.435813 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3S4K 
_atom_sites.fract_transf_matrix[1][1]    0.023968 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001157 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 141 1 EDO EDO . 
D 2 EDO A 1 142 1 EDO EDO . 
E 3 CL A 1 143 1 CL CL . 
F 3 CL A 1 144 1 CL CL . 
G 4 SO4 A 1 145 1 SO4 SO4 . 
H 2 EDO B 1 141 1 EDO EDO . 
I 2 EDO B 1 142 1 EDO EDO . 
J 3 CL B 1 143 1 CL CL . 
K 4 SO4 B 1 144 2 SO4 SO4 . 
L 3 CL B 1 145 1 CL CL . 
M 5 HOH A 1 146 146 HOH HOH . 
M 5 HOH A 2 147 147 HOH HOH . 
M 5 HOH A 3 148 148 HOH HOH . 
M 5 HOH A 4 149 3 HOH HOH . 
M 5 HOH A 5 150 150 HOH HOH . 
M 5 HOH A 6 151 151 HOH HOH . 
M 5 HOH A 7 152 152 HOH HOH . 
M 5 HOH A 8 153 4 HOH HOH . 
M 5 HOH A 9 154 5 HOH HOH . 
M 5 HOH A 10 155 7 HOH HOH . 
M 5 HOH A 11 156 156 HOH HOH . 
M 5 HOH A 12 157 8 HOH HOH . 
M 5 HOH A 13 158 9 HOH HOH . 
M 5 HOH A 14 159 16 HOH HOH . 
M 5 HOH A 15 160 18 HOH HOH . 
M 5 HOH A 16 161 161 HOH HOH . 
M 5 HOH A 17 162 162 HOH HOH . 
M 5 HOH A 18 163 22 HOH HOH . 
M 5 HOH A 19 164 28 HOH HOH . 
M 5 HOH A 20 165 29 HOH HOH . 
M 5 HOH A 21 166 31 HOH HOH . 
M 5 HOH A 22 167 32 HOH HOH . 
M 5 HOH A 23 168 33 HOH HOH . 
M 5 HOH A 24 169 36 HOH HOH . 
M 5 HOH A 25 170 37 HOH HOH . 
M 5 HOH A 26 171 43 HOH HOH . 
M 5 HOH A 27 172 44 HOH HOH . 
M 5 HOH A 28 173 45 HOH HOH . 
M 5 HOH A 29 174 174 HOH HOH . 
M 5 HOH A 30 175 47 HOH HOH . 
M 5 HOH A 31 176 176 HOH HOH . 
M 5 HOH A 32 177 48 HOH HOH . 
M 5 HOH A 33 178 178 HOH HOH . 
M 5 HOH A 34 179 50 HOH HOH . 
M 5 HOH A 35 180 53 HOH HOH . 
M 5 HOH A 36 181 54 HOH HOH . 
M 5 HOH A 37 182 55 HOH HOH . 
M 5 HOH A 38 183 56 HOH HOH . 
M 5 HOH A 39 184 58 HOH HOH . 
M 5 HOH A 40 185 60 HOH HOH . 
M 5 HOH A 41 186 70 HOH HOH . 
M 5 HOH A 42 187 72 HOH HOH . 
M 5 HOH A 43 188 74 HOH HOH . 
M 5 HOH A 44 189 189 HOH HOH . 
M 5 HOH A 45 190 190 HOH HOH . 
M 5 HOH A 46 191 76 HOH HOH . 
M 5 HOH A 47 192 78 HOH HOH . 
M 5 HOH A 48 193 193 HOH HOH . 
M 5 HOH A 49 194 194 HOH HOH . 
M 5 HOH A 50 195 195 HOH HOH . 
M 5 HOH A 51 196 79 HOH HOH . 
M 5 HOH A 52 197 80 HOH HOH . 
M 5 HOH A 53 198 198 HOH HOH . 
M 5 HOH A 54 199 83 HOH HOH . 
M 5 HOH A 55 200 92 HOH HOH . 
M 5 HOH A 56 201 93 HOH HOH . 
M 5 HOH A 57 202 94 HOH HOH . 
M 5 HOH A 58 203 95 HOH HOH . 
M 5 HOH A 59 204 204 HOH HOH . 
M 5 HOH A 60 205 99 HOH HOH . 
M 5 HOH A 61 206 100 HOH HOH . 
M 5 HOH A 62 207 102 HOH HOH . 
M 5 HOH A 63 208 208 HOH HOH . 
M 5 HOH A 64 209 103 HOH HOH . 
M 5 HOH A 65 210 210 HOH HOH . 
M 5 HOH A 66 211 105 HOH HOH . 
M 5 HOH A 67 212 212 HOH HOH . 
M 5 HOH A 68 213 213 HOH HOH . 
M 5 HOH A 69 214 214 HOH HOH . 
M 5 HOH A 70 215 215 HOH HOH . 
M 5 HOH A 71 216 108 HOH HOH . 
M 5 HOH A 72 217 217 HOH HOH . 
M 5 HOH A 73 218 218 HOH HOH . 
M 5 HOH A 74 219 219 HOH HOH . 
M 5 HOH A 75 220 112 HOH HOH . 
M 5 HOH A 76 221 113 HOH HOH . 
M 5 HOH A 77 222 222 HOH HOH . 
M 5 HOH A 78 223 223 HOH HOH . 
M 5 HOH A 79 224 224 HOH HOH . 
M 5 HOH A 80 225 225 HOH HOH . 
M 5 HOH A 81 226 226 HOH HOH . 
M 5 HOH A 82 227 227 HOH HOH . 
M 5 HOH A 83 228 228 HOH HOH . 
M 5 HOH A 84 229 114 HOH HOH . 
M 5 HOH A 85 230 230 HOH HOH . 
M 5 HOH A 86 231 231 HOH HOH . 
M 5 HOH A 87 232 232 HOH HOH . 
M 5 HOH A 88 233 233 HOH HOH . 
M 5 HOH A 89 234 234 HOH HOH . 
M 5 HOH A 90 235 116 HOH HOH . 
M 5 HOH A 91 236 118 HOH HOH . 
M 5 HOH A 92 237 237 HOH HOH . 
M 5 HOH A 93 238 121 HOH HOH . 
M 5 HOH A 94 239 123 HOH HOH . 
M 5 HOH A 95 240 125 HOH HOH . 
M 5 HOH A 96 241 131 HOH HOH . 
M 5 HOH A 97 242 132 HOH HOH . 
M 5 HOH A 98 243 134 HOH HOH . 
M 5 HOH A 99 244 142 HOH HOH . 
M 5 HOH A 100 246 246 HOH HOH . 
M 5 HOH A 101 247 247 HOH HOH . 
M 5 HOH A 102 248 248 HOH HOH . 
M 5 HOH A 103 258 258 HOH HOH . 
M 5 HOH A 104 263 263 HOH HOH . 
M 5 HOH A 105 265 265 HOH HOH . 
M 5 HOH A 106 268 268 HOH HOH . 
M 5 HOH A 107 271 271 HOH HOH . 
M 5 HOH A 108 284 284 HOH HOH . 
M 5 HOH A 109 285 285 HOH HOH . 
M 5 HOH A 110 288 288 HOH HOH . 
M 5 HOH A 111 291 291 HOH HOH . 
M 5 HOH A 112 296 296 HOH HOH . 
M 5 HOH A 113 301 301 HOH HOH . 
M 5 HOH A 114 307 307 HOH HOH . 
M 5 HOH A 115 308 308 HOH HOH . 
M 5 HOH A 116 311 311 HOH HOH . 
N 5 HOH B 1 146 6 HOH HOH . 
N 5 HOH B 2 147 10 HOH HOH . 
N 5 HOH B 3 148 15 HOH HOH . 
N 5 HOH B 4 149 17 HOH HOH . 
N 5 HOH B 5 150 20 HOH HOH . 
N 5 HOH B 6 151 21 HOH HOH . 
N 5 HOH B 7 152 23 HOH HOH . 
N 5 HOH B 8 153 153 HOH HOH . 
N 5 HOH B 9 154 154 HOH HOH . 
N 5 HOH B 10 155 155 HOH HOH . 
N 5 HOH B 11 156 24 HOH HOH . 
N 5 HOH B 12 157 157 HOH HOH . 
N 5 HOH B 13 158 158 HOH HOH . 
N 5 HOH B 14 159 26 HOH HOH . 
N 5 HOH B 15 160 160 HOH HOH . 
N 5 HOH B 16 161 34 HOH HOH . 
N 5 HOH B 17 162 35 HOH HOH . 
N 5 HOH B 18 163 163 HOH HOH . 
N 5 HOH B 19 164 164 HOH HOH . 
N 5 HOH B 20 165 39 HOH HOH . 
N 5 HOH B 21 166 41 HOH HOH . 
N 5 HOH B 22 167 42 HOH HOH . 
N 5 HOH B 23 168 168 HOH HOH . 
N 5 HOH B 24 169 169 HOH HOH . 
N 5 HOH B 25 170 170 HOH HOH . 
N 5 HOH B 26 171 171 HOH HOH . 
N 5 HOH B 27 172 172 HOH HOH . 
N 5 HOH B 28 173 49 HOH HOH . 
N 5 HOH B 29 174 52 HOH HOH . 
N 5 HOH B 30 175 57 HOH HOH . 
N 5 HOH B 31 176 59 HOH HOH . 
N 5 HOH B 32 177 61 HOH HOH . 
N 5 HOH B 33 178 62 HOH HOH . 
N 5 HOH B 34 179 64 HOH HOH . 
N 5 HOH B 35 180 65 HOH HOH . 
N 5 HOH B 36 181 181 HOH HOH . 
N 5 HOH B 37 182 182 HOH HOH . 
N 5 HOH B 38 183 66 HOH HOH . 
N 5 HOH B 39 184 68 HOH HOH . 
N 5 HOH B 40 185 185 HOH HOH . 
N 5 HOH B 41 186 186 HOH HOH . 
N 5 HOH B 42 187 69 HOH HOH . 
N 5 HOH B 43 188 73 HOH HOH . 
N 5 HOH B 44 189 75 HOH HOH . 
N 5 HOH B 45 190 77 HOH HOH . 
N 5 HOH B 46 191 191 HOH HOH . 
N 5 HOH B 47 192 82 HOH HOH . 
N 5 HOH B 48 193 86 HOH HOH . 
N 5 HOH B 49 194 88 HOH HOH . 
N 5 HOH B 50 195 89 HOH HOH . 
N 5 HOH B 51 196 91 HOH HOH . 
N 5 HOH B 52 197 104 HOH HOH . 
N 5 HOH B 53 198 106 HOH HOH . 
N 5 HOH B 54 199 117 HOH HOH . 
N 5 HOH B 55 200 200 HOH HOH . 
N 5 HOH B 56 201 201 HOH HOH . 
N 5 HOH B 57 202 119 HOH HOH . 
N 5 HOH B 58 203 122 HOH HOH . 
N 5 HOH B 59 204 124 HOH HOH . 
N 5 HOH B 60 205 205 HOH HOH . 
N 5 HOH B 61 206 126 HOH HOH . 
N 5 HOH B 62 207 207 HOH HOH . 
N 5 HOH B 63 208 127 HOH HOH . 
N 5 HOH B 64 209 128 HOH HOH . 
N 5 HOH B 65 210 130 HOH HOH . 
N 5 HOH B 66 211 211 HOH HOH . 
N 5 HOH B 67 212 135 HOH HOH . 
N 5 HOH B 68 213 137 HOH HOH . 
N 5 HOH B 69 214 139 HOH HOH . 
N 5 HOH B 70 215 140 HOH HOH . 
N 5 HOH B 71 216 216 HOH HOH . 
N 5 HOH B 72 217 144 HOH HOH . 
N 5 HOH B 73 220 220 HOH HOH . 
N 5 HOH B 74 221 221 HOH HOH . 
N 5 HOH B 75 238 238 HOH HOH . 
N 5 HOH B 76 239 239 HOH HOH . 
N 5 HOH B 77 242 242 HOH HOH . 
N 5 HOH B 78 244 244 HOH HOH . 
N 5 HOH B 79 245 245 HOH HOH . 
N 5 HOH B 80 252 252 HOH HOH . 
N 5 HOH B 81 256 256 HOH HOH . 
N 5 HOH B 82 262 262 HOH HOH . 
N 5 HOH B 83 272 272 HOH HOH . 
N 5 HOH B 84 274 274 HOH HOH . 
N 5 HOH B 85 275 275 HOH HOH . 
N 5 HOH B 86 276 276 HOH HOH . 
N 5 HOH B 87 278 278 HOH HOH . 
N 5 HOH B 88 279 279 HOH HOH . 
N 5 HOH B 89 280 280 HOH HOH . 
N 5 HOH B 90 281 281 HOH HOH . 
N 5 HOH B 91 282 282 HOH HOH . 
N 5 HOH B 92 286 286 HOH HOH . 
N 5 HOH B 93 289 289 HOH HOH . 
N 5 HOH B 94 293 293 HOH HOH . 
N 5 HOH B 95 294 294 HOH HOH . 
N 5 HOH B 96 295 295 HOH HOH . 
N 5 HOH B 97 297 297 HOH HOH . 
N 5 HOH B 98 298 298 HOH HOH . 
N 5 HOH B 99 299 299 HOH HOH . 
N 5 HOH B 100 302 302 HOH HOH . 
N 5 HOH B 101 303 303 HOH HOH . 
N 5 HOH B 102 304 304 HOH HOH . 
N 5 HOH B 103 305 305 HOH HOH . 
N 5 HOH B 104 309 309 HOH HOH . 
N 5 HOH B 105 310 310 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 12.708 -4.67 26.464 1 16.49 ? C1 EDO 142 A 1 
HETATM 2 O O1 EDO . . . D 2 13.704 -3.686 26.174 1 15.4 ? O1 EDO 142 A 1 
HETATM 3 C C2 EDO . . . D 2 13.25 -6.069 26.211 1 17.78 ? C2 EDO 142 A 1 
HETATM 4 O O2 EDO . . . D 2 14.329 -6.36 27.118 1 15.96 ? O2 EDO 142 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           374 
_model_server_stats.encode_time_ms          26 
_model_server_stats.element_count           4 
#