data_3S4O # _model_server_result.job_id Hcsmq6hOxlhQFigDyIfdCQ _model_server_result.datetime_utc '2025-03-06 07:41:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":170}' # _entry.id 3S4O # _exptl.entry_id 3S4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.128 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description THIOSULFATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S4O _cell.length_a 42.518 _cell.length_b 69.42 _cell.length_c 118.931 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 51 1_555 A SG CYS 116 A CYS 112 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 55 B CYS 51 1_555 B SG CYS 116 B CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 A C MSE 5 A MSE 1 1_555 A N ASN 6 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C GLN 158 A GLN 154 1_555 A N MSE 159 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 159 A MSE 155 1_555 A N HIS 160 A HIS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 B C MSE 5 B MSE 1 1_555 B N ASN 6 B ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 B C GLN 158 B GLN 154 1_555 B N MSE 159 B MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C MSE 159 B MSE 155 1_555 B N HIS 160 B HIS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'O3 S2 -2' _chem_comp.formula_weight 112.128 _chem_comp.id THJ _chem_comp.mon_nstd_flag . _chem_comp.name THIOSULFATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 O1 THJ doub 323 n n S1 O2 THJ doub 324 n n S1 O3 THJ sing 325 n n S1 S2 THJ sing 326 n n # _atom_sites.entry_id 3S4O _atom_sites.fract_transf_matrix[1][1] 0.023519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 THJ A 1 170 170 THJ THJ . D 3 EPE A 1 164 1 EPE EPE . E 4 HOH A 1 165 1 HOH HOH . E 4 HOH A 2 166 4 HOH HOH . E 4 HOH A 3 167 6 HOH HOH . E 4 HOH A 4 168 7 HOH HOH . E 4 HOH A 5 169 8 HOH HOH . E 4 HOH A 6 171 9 HOH HOH . E 4 HOH A 7 172 12 HOH HOH . E 4 HOH A 8 173 13 HOH HOH . E 4 HOH A 9 174 14 HOH HOH . E 4 HOH A 10 175 15 HOH HOH . E 4 HOH A 11 176 16 HOH HOH . E 4 HOH A 12 177 18 HOH HOH . E 4 HOH A 13 178 23 HOH HOH . E 4 HOH A 14 179 25 HOH HOH . E 4 HOH A 15 180 28 HOH HOH . E 4 HOH A 16 181 29 HOH HOH . E 4 HOH A 17 182 31 HOH HOH . E 4 HOH A 18 183 32 HOH HOH . E 4 HOH A 19 184 34 HOH HOH . E 4 HOH A 20 185 38 HOH HOH . E 4 HOH A 21 186 40 HOH HOH . E 4 HOH A 22 187 41 HOH HOH . E 4 HOH A 23 188 48 HOH HOH . E 4 HOH A 24 189 51 HOH HOH . E 4 HOH A 25 190 58 HOH HOH . E 4 HOH A 26 191 59 HOH HOH . E 4 HOH A 27 192 60 HOH HOH . E 4 HOH A 28 193 61 HOH HOH . E 4 HOH A 29 194 64 HOH HOH . E 4 HOH A 30 195 66 HOH HOH . E 4 HOH A 31 196 71 HOH HOH . E 4 HOH A 32 197 74 HOH HOH . E 4 HOH A 33 198 75 HOH HOH . E 4 HOH A 34 199 77 HOH HOH . E 4 HOH A 35 200 78 HOH HOH . E 4 HOH A 36 201 79 HOH HOH . E 4 HOH A 37 202 80 HOH HOH . E 4 HOH A 38 203 81 HOH HOH . E 4 HOH A 39 204 82 HOH HOH . E 4 HOH A 40 205 85 HOH HOH . E 4 HOH A 41 206 86 HOH HOH . E 4 HOH A 42 207 88 HOH HOH . E 4 HOH A 43 208 89 HOH HOH . E 4 HOH A 44 209 93 HOH HOH . E 4 HOH A 45 210 95 HOH HOH . E 4 HOH A 46 211 97 HOH HOH . E 4 HOH A 47 212 99 HOH HOH . E 4 HOH A 48 213 49 HOH HOH . F 4 HOH B 1 164 2 HOH HOH . F 4 HOH B 2 165 3 HOH HOH . F 4 HOH B 3 166 5 HOH HOH . F 4 HOH B 4 167 10 HOH HOH . F 4 HOH B 5 168 11 HOH HOH . F 4 HOH B 6 169 17 HOH HOH . F 4 HOH B 7 170 19 HOH HOH . F 4 HOH B 8 171 20 HOH HOH . F 4 HOH B 9 172 21 HOH HOH . F 4 HOH B 10 173 22 HOH HOH . F 4 HOH B 11 174 24 HOH HOH . F 4 HOH B 12 175 26 HOH HOH . F 4 HOH B 13 176 30 HOH HOH . F 4 HOH B 14 177 33 HOH HOH . F 4 HOH B 15 178 36 HOH HOH . F 4 HOH B 16 179 37 HOH HOH . F 4 HOH B 17 180 39 HOH HOH . F 4 HOH B 18 181 42 HOH HOH . F 4 HOH B 19 182 44 HOH HOH . F 4 HOH B 20 183 45 HOH HOH . F 4 HOH B 21 184 46 HOH HOH . F 4 HOH B 22 186 54 HOH HOH . F 4 HOH B 23 187 55 HOH HOH . F 4 HOH B 24 188 57 HOH HOH . F 4 HOH B 25 189 62 HOH HOH . F 4 HOH B 26 190 63 HOH HOH . F 4 HOH B 27 191 67 HOH HOH . F 4 HOH B 28 192 68 HOH HOH . F 4 HOH B 29 193 69 HOH HOH . F 4 HOH B 30 194 70 HOH HOH . F 4 HOH B 31 195 73 HOH HOH . F 4 HOH B 32 196 76 HOH HOH . F 4 HOH B 33 197 83 HOH HOH . F 4 HOH B 34 198 84 HOH HOH . F 4 HOH B 35 199 87 HOH HOH . F 4 HOH B 36 200 90 HOH HOH . F 4 HOH B 37 201 91 HOH HOH . F 4 HOH B 38 202 92 HOH HOH . F 4 HOH B 39 203 94 HOH HOH . F 4 HOH B 40 204 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 THJ . . . C 2 16.842 -10.555 -1.501 1 64.94 ? S1 THJ 170 A 1 HETATM 2 O O1 THJ . . . C 2 17.835 -11.571 -1.088 1 58.1 ? O1 THJ 170 A 1 HETATM 3 O O2 THJ . . . C 2 17.142 -9.276 -0.814 1 64.69 ? O2 THJ 170 A 1 HETATM 4 O O3 THJ . . . C 2 15.484 -10.987 -1.093 1 62.74 ? O3 THJ 170 A 1 HETATM 5 S S2 THJ . . . C 2 16.921 -10.304 -3.428 1 55.55 ? S2 THJ 170 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #