data_3S56 # _model_server_result.job_id ucqoOfGZ8Cswueu4XBEKEw _model_server_result.datetime_utc '2024-11-04 20:35:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3S56 # _exptl.entry_id 3S56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 670.841 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S56 _cell.length_a 29.203 _cell.length_b 67.416 _cell.length_c 92.751 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C38 H50 N6 O5' _chem_comp.formula_weight 670.841 _chem_comp.id ROC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'Fortovase;SAQUINAVIR;RO 31-8959' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C ROC doub 283 n n C C2 ROC sing 284 n n N1 C2 ROC doub 285 n y N1 C8A ROC sing 286 n y C2 C3 ROC sing 287 n y C3 C4 ROC doub 288 n y C3 H3 ROC sing 289 n n C4 C4A ROC sing 290 n y C4 H4 ROC sing 291 n n C4A C5 ROC doub 292 n y C4A C8A ROC sing 293 n y C5 C6 ROC sing 294 n y C5 H5 ROC sing 295 n n C6 C7 ROC doub 296 n y C6 H6 ROC sing 297 n n C7 C8 ROC sing 298 n y C7 H7 ROC sing 299 n n C8 C8A ROC doub 300 n y C8 H8 ROC sing 301 n n N CA ROC sing 302 n n N H ROC sing 303 n n CA C1 ROC sing 304 n n CA CB ROC sing 305 n n CA HA ROC sing 306 n n C1 O1 ROC doub 307 n n CB CG ROC sing 308 n n CB HB2 ROC sing 309 n n CB HB3 ROC sing 310 n n CG OD1 ROC doub 311 n n CG ND2 ROC sing 312 n n ND2 HD21 ROC sing 313 n n ND2 HD22 ROC sing 314 n n C9 O2 ROC sing 315 n n C9 CA1 ROC sing 316 n n C9 HC ROC sing 317 n n O2 HO ROC sing 318 n n CA1 N2 ROC sing 319 n n CA1 CB1 ROC sing 320 n n CA1 HA1 ROC sing 321 n n N2 H1 ROC sing 322 n n CB1 CG1 ROC sing 323 n n CB1 HB21 ROC sing 324 n n CB1 HB31 ROC sing 325 n n CG1 CD1 ROC doub 326 n y CG1 CD2 ROC sing 327 n y CD1 CE1 ROC sing 328 n y CD1 HD1 ROC sing 329 n n CD2 CE2 ROC doub 330 n y CD2 HD2 ROC sing 331 n n CE1 CZ ROC doub 332 n y CE1 HE1 ROC sing 333 n n CE2 CZ ROC sing 334 n y CE2 HE2 ROC sing 335 n n CZ HZ ROC sing 336 n n N11 CM ROC sing 337 n n N11 C21 ROC sing 338 n n N11 C81 ROC sing 339 n n CM HM1 ROC sing 340 n n CM HM2 ROC sing 341 n n C21 CC ROC sing 342 n n C21 C31 ROC sing 343 n n C21 H2 ROC sing 344 n n CC O3 ROC doub 345 n n C31 C3A ROC sing 346 n n C31 H31 ROC sing 347 n n C31 H32 ROC sing 348 n n C3A C41 ROC sing 349 n n C3A C7A ROC sing 350 n n C3A H3A ROC sing 351 n n C41 C51 ROC sing 352 n n C41 H41 ROC sing 353 n n C41 H42 ROC sing 354 n n C51 C61 ROC sing 355 n n C51 H51 ROC sing 356 n n C51 H52 ROC sing 357 n n C61 C71 ROC sing 358 n n C61 H61 ROC sing 359 n n C61 H62 ROC sing 360 n n C71 C7A ROC sing 361 n n C71 H71 ROC sing 362 n n C71 H72 ROC sing 363 n n C7A C81 ROC sing 364 n n C7A H7A ROC sing 365 n n C81 H81 ROC sing 366 n n C81 H82 ROC sing 367 n n N3 CD ROC sing 368 n n N3 HN1 ROC sing 369 n n CD C11 ROC sing 370 n n CD C22 ROC sing 371 n n CD C32 ROC sing 372 n n C11 H11 ROC sing 373 n n C11 H12 ROC sing 374 n n C11 H13 ROC sing 375 n n C22 H21 ROC sing 376 n n C22 H22 ROC sing 377 n n C22 H23 ROC sing 378 n n C32 H311 ROC sing 379 n n C32 H321 ROC sing 380 n n C32 H33 ROC sing 381 n n C N ROC sing 382 n n C1 N2 ROC sing 383 n n C9 CM ROC sing 384 n n CC N3 ROC sing 385 n n # _atom_sites.entry_id 3S56 _atom_sites.fract_transf_matrix[1][1] 0.034243 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ROC A 1 201 201 ROC ROC . D 2 ROC B 1 101 203 ROC ROC . E 3 ACT B 1 102 501 ACT ACT . F 4 HOH A 1 301 1003 HOH HOH . F 4 HOH A 2 302 1005 HOH HOH . F 4 HOH A 3 303 1008 HOH HOH . F 4 HOH A 4 304 1011 HOH HOH . F 4 HOH A 5 305 1012 HOH HOH . F 4 HOH A 6 306 1018 HOH HOH . F 4 HOH A 7 307 1019 HOH HOH . F 4 HOH A 8 308 1020 HOH HOH . F 4 HOH A 9 309 1021 HOH HOH . F 4 HOH A 10 310 1022 HOH HOH . F 4 HOH A 11 311 1024 HOH HOH . F 4 HOH A 12 312 1026 HOH HOH . F 4 HOH A 13 313 1031 HOH HOH . F 4 HOH A 14 314 1032 HOH HOH . F 4 HOH A 15 315 1036 HOH HOH . F 4 HOH A 16 316 1038 HOH HOH . F 4 HOH A 17 317 1039 HOH HOH . F 4 HOH A 18 318 1041 HOH HOH . F 4 HOH A 19 319 1044 HOH HOH . F 4 HOH A 20 320 1045 HOH HOH . F 4 HOH A 21 321 1047 HOH HOH . F 4 HOH A 22 322 1048 HOH HOH . F 4 HOH A 23 323 1049 HOH HOH . F 4 HOH A 24 324 1051 HOH HOH . F 4 HOH A 25 325 1052 HOH HOH . F 4 HOH A 26 326 1056 HOH HOH . F 4 HOH A 27 327 1057 HOH HOH . F 4 HOH A 28 328 1059 HOH HOH . F 4 HOH A 29 329 1062 HOH HOH . F 4 HOH A 30 330 1063 HOH HOH . F 4 HOH A 31 331 1064 HOH HOH . F 4 HOH A 32 332 1065 HOH HOH . F 4 HOH A 33 333 1066 HOH HOH . F 4 HOH A 34 334 1067 HOH HOH . F 4 HOH A 35 335 1068 HOH HOH . F 4 HOH A 36 336 1070 HOH HOH . F 4 HOH A 37 337 1075 HOH HOH . F 4 HOH A 38 338 1080 HOH HOH . F 4 HOH A 39 339 1081 HOH HOH . F 4 HOH A 40 340 1084 HOH HOH . F 4 HOH A 41 341 1085 HOH HOH . F 4 HOH A 42 342 1088 HOH HOH . F 4 HOH A 43 343 1089 HOH HOH . F 4 HOH A 44 344 1090 HOH HOH . F 4 HOH A 45 345 1091 HOH HOH . F 4 HOH A 46 346 1096 HOH HOH . G 4 HOH B 1 1001 1001 HOH HOH . G 4 HOH B 2 1002 1002 HOH HOH . G 4 HOH B 3 1003 1004 HOH HOH . G 4 HOH B 4 1004 1006 HOH HOH . G 4 HOH B 5 1005 1007 HOH HOH . G 4 HOH B 6 1006 1009 HOH HOH . G 4 HOH B 7 1007 1010 HOH HOH . G 4 HOH B 8 1008 1013 HOH HOH . G 4 HOH B 9 1009 1014 HOH HOH . G 4 HOH B 10 1010 1015 HOH HOH . G 4 HOH B 11 1011 1016 HOH HOH . G 4 HOH B 12 1012 1017 HOH HOH . G 4 HOH B 13 1013 1023 HOH HOH . G 4 HOH B 14 1014 1025 HOH HOH . G 4 HOH B 15 1015 1027 HOH HOH . G 4 HOH B 16 1016 1028 HOH HOH . G 4 HOH B 17 1017 1029 HOH HOH . G 4 HOH B 18 1018 1030 HOH HOH . G 4 HOH B 19 1019 1033 HOH HOH . G 4 HOH B 20 1020 1034 HOH HOH . G 4 HOH B 21 1021 1035 HOH HOH . G 4 HOH B 22 1022 1037 HOH HOH . G 4 HOH B 23 1023 1040 HOH HOH . G 4 HOH B 24 1024 1042 HOH HOH . G 4 HOH B 25 1025 1043 HOH HOH . G 4 HOH B 26 1026 1046 HOH HOH . G 4 HOH B 27 1027 1050 HOH HOH . G 4 HOH B 28 1028 1053 HOH HOH . G 4 HOH B 29 1029 1054 HOH HOH . G 4 HOH B 30 1030 1055 HOH HOH . G 4 HOH B 31 1031 1058 HOH HOH . G 4 HOH B 32 1032 1060 HOH HOH . G 4 HOH B 33 1033 1061 HOH HOH . G 4 HOH B 34 1034 1069 HOH HOH . G 4 HOH B 35 1035 1071 HOH HOH . G 4 HOH B 36 1036 1072 HOH HOH . G 4 HOH B 37 1037 1073 HOH HOH . G 4 HOH B 38 1038 1074 HOH HOH . G 4 HOH B 39 1039 1076 HOH HOH . G 4 HOH B 40 1040 1077 HOH HOH . G 4 HOH B 41 1041 1078 HOH HOH . G 4 HOH B 42 1042 1079 HOH HOH . G 4 HOH B 43 1043 1082 HOH HOH . G 4 HOH B 44 1044 1083 HOH HOH . G 4 HOH B 45 1045 1086 HOH HOH . G 4 HOH B 46 1046 1087 HOH HOH . G 4 HOH B 47 1047 1092 HOH HOH . G 4 HOH B 48 1048 1093 HOH HOH . G 4 HOH B 49 1049 1094 HOH HOH . G 4 HOH B 50 1050 1095 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ROC . . . C 2 5.941 7.499 41.256 1 18.28 ? C ROC 201 A 1 HETATM 2 O O ROC . . . C 2 5.996 6.341 41.547 1 14.94 ? O ROC 201 A 1 HETATM 3 N N1 ROC . . . C 2 6.999 9.544 40.725 1 20.45 ? N1 ROC 201 A 1 HETATM 4 C C2 ROC . . . C 2 7.188 8.299 41.158 1 21.46 ? C2 ROC 201 A 1 HETATM 5 C C3 ROC . . . C 2 8.455 7.834 41.527 1 28.2 ? C3 ROC 201 A 1 HETATM 6 C C4 ROC . . . C 2 9.513 8.764 41.407 1 32.41 ? C4 ROC 201 A 1 HETATM 7 C C5 ROC . . . C 2 10.313 11.014 40.746 1 30.09 ? C5 ROC 201 A 1 HETATM 8 C C6 ROC . . . C 2 10.001 12.295 40.25 1 26 ? C6 ROC 201 A 1 HETATM 9 C C7 ROC . . . C 2 8.697 12.629 39.908 1 25.98 ? C7 ROC 201 A 1 HETATM 10 C C8 ROC . . . C 2 7.689 11.687 40.06 1 21.85 ? C8 ROC 201 A 1 HETATM 11 C C4A ROC . . . C 2 9.278 10.065 40.925 1 27.49 ? C4A ROC 201 A 1 HETATM 12 C C8A ROC . . . C 2 7.978 10.437 40.597 1 25.1 ? C8A ROC 201 A 1 HETATM 13 N N ROC . . . C 2 4.765 8.164 41.083 1 12.87 ? N ROC 201 A 1 HETATM 14 C CA ROC . . . C 2 3.526 7.374 41.156 1 11.22 ? CA ROC 201 A 1 HETATM 15 C C1 ROC . . . C 2 2.691 7.785 39.899 1 10.82 ? C1 ROC 201 A 1 HETATM 16 O O1 ROC . . . C 2 2.082 8.892 39.812 1 9.45 ? O1 ROC 201 A 1 HETATM 17 C CB ROC . . . C 2 2.766 7.854 42.347 1 10.49 ? CB ROC 201 A 1 HETATM 18 C CG ROC . . . C 2 3.582 7.572 43.637 1 14.43 ? CG ROC 201 A 1 HETATM 19 O OD1 ROC . . . C 2 4.209 8.519 44.19 1 21.61 ? OD1 ROC 201 A 1 HETATM 20 N ND2 ROC . . . C 2 3.586 6.368 44.028 1 13.57 ? ND2 ROC 201 A 1 HETATM 21 C C9 ROC . . . C 2 0.956 5.874 37.643 1 12.22 ? C9 ROC 201 A 1 HETATM 22 O O2 ROC . . . C 2 1.475 4.527 37.47 1 12.16 ? O2 ROC 201 A 1 HETATM 23 C CA1 ROC . . . C 2 1.987 6.999 37.663 1 12.49 ? CA1 ROC 201 A 1 HETATM 24 N N2 ROC . . . C 2 2.721 6.861 38.958 1 10.06 ? N2 ROC 201 A 1 HETATM 25 C CB1 ROC . . . C 2 2.999 6.749 36.528 1 8.15 ? CB1 ROC 201 A 1 HETATM 26 C CG1 ROC . . . C 2 4.248 7.551 36.782 1 8.75 ? CG1 ROC 201 A 1 HETATM 27 C CD1 ROC . . . C 2 4.293 8.907 36.55 1 7.81 ? CD1 ROC 201 A 1 HETATM 28 C CD2 ROC . . . C 2 5.401 6.855 37.192 1 15.55 ? CD2 ROC 201 A 1 HETATM 29 C CE1 ROC . . . C 2 5.482 9.644 36.867 1 16.69 ? CE1 ROC 201 A 1 HETATM 30 C CE2 ROC . . . C 2 6.541 7.542 37.458 1 14.52 ? CE2 ROC 201 A 1 HETATM 31 C CZ ROC . . . C 2 6.63 8.947 37.238 1 15.08 ? CZ ROC 201 A 1 HETATM 32 N N11 ROC . . . C 2 -1.089 7.012 36.89 1 10.66 ? N11 ROC 201 A 1 HETATM 33 C CM ROC . . . C 2 -0.048 6.037 36.516 1 9.07 ? CM ROC 201 A 1 HETATM 34 C C21 ROC . . . C 2 -1.697 7.794 35.813 1 13.34 ? C21 ROC 201 A 1 HETATM 35 C CC ROC . . . C 2 -0.676 8.406 34.925 1 12.46 ? CC ROC 201 A 1 HETATM 36 O O3 ROC . . . C 2 0.261 9.123 35.369 1 8.74 ? O3 ROC 201 A 1 HETATM 37 C C31 ROC . . . C 2 -2.559 8.91 36.427 1 14.12 ? C31 ROC 201 A 1 HETATM 38 C C3A ROC . . . C 2 -3.7 8.31 37.338 1 14.04 ? C3A ROC 201 A 1 HETATM 39 C C41 ROC . . . C 2 -4.652 9.358 37.933 1 11.04 ? C41 ROC 201 A 1 HETATM 40 C C51 ROC . . . C 2 -3.879 10.308 38.874 1 13.86 ? C51 ROC 201 A 1 HETATM 41 C C61 ROC . . . C 2 -3.177 9.413 39.941 1 18.43 ? C61 ROC 201 A 1 HETATM 42 C C71 ROC . . . C 2 -2.286 8.263 39.332 1 14.41 ? C71 ROC 201 A 1 HETATM 43 C C7A ROC . . . C 2 -3.15 7.357 38.348 1 11.1 ? C7A ROC 201 A 1 HETATM 44 C C81 ROC . . . C 2 -2.221 6.346 37.68 1 8.74 ? C81 ROC 201 A 1 HETATM 45 N N3 ROC . . . C 2 -0.935 8.144 33.629 1 8.57 ? N3 ROC 201 A 1 HETATM 46 C CD ROC . . . C 2 -0.09 8.68 32.565 1 9.3 ? CD ROC 201 A 1 HETATM 47 C C11 ROC . . . C 2 -0.68 8.195 31.156 1 9.84 ? C11 ROC 201 A 1 HETATM 48 C C22 ROC . . . C 2 1.296 8.161 32.672 1 12.54 ? C22 ROC 201 A 1 HETATM 49 C C32 ROC . . . C 2 -0.036 10.217 32.638 1 10.22 ? C32 ROC 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #