data_3S5N # _model_server_result.job_id k1n281sUuLQT3_GJ8qIlnQ _model_server_result.datetime_utc '2024-12-23 06:38:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3}' # _entry.id 3S5N # _exptl.entry_id 3S5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S5N _cell.length_a 142.143 _cell.length_b 142.143 _cell.length_c 108.07 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 71.0715 -123.099449 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -36.023333 4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 71.0715 -123.099449 -36.023333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 164 A SER 187 1_555 B K K . A K 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc2 A O HIS 166 A HIS 189 1_555 B K K . A K 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc3 A O ILE 169 A ILE 192 1_555 B K K . A K 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc4 A O THR 189 A THR 212 1_555 C NA NA . A NA 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc5 A O GLN 192 A GLN 215 1_555 C NA NA . A NA 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc6 A O ASP 193 A ASP 216 1_555 B K K . A K 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc7 A O PHE 194 A PHE 217 1_555 C NA NA . A NA 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc8 B K K . A K 330 1_555 J O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc9 B K K . A K 330 1_555 J O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc10 C NA NA . A NA 331 1_555 J O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 C NA NA . A NA 331 1_555 J O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3S5N _atom_sites.fract_transf_matrix[1][1] 0.007035 _atom_sites.fract_transf_matrix[1][2] 0.004062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 330 330 K K . C 3 NA A 1 331 331 NA NA . D 4 EDO A 1 1 1 EDO EDO . E 4 EDO A 1 2 2 EDO EDO . F 4 EDO A 1 3 3 EDO EDO . G 4 EDO A 1 4 4 EDO EDO . H 4 EDO A 1 5 5 EDO EDO . I 4 EDO A 1 6 6 EDO EDO . J 5 HOH A 1 340 340 HOH HOH . J 5 HOH A 2 341 341 HOH HOH . J 5 HOH A 3 342 342 HOH HOH . J 5 HOH A 4 343 343 HOH HOH . J 5 HOH A 5 344 344 HOH HOH . J 5 HOH A 6 345 345 HOH HOH . J 5 HOH A 7 346 346 HOH HOH . J 5 HOH A 8 347 347 HOH HOH . J 5 HOH A 9 348 348 HOH HOH . J 5 HOH A 10 349 349 HOH HOH . J 5 HOH A 11 350 350 HOH HOH . J 5 HOH A 12 351 351 HOH HOH . J 5 HOH A 13 352 352 HOH HOH . J 5 HOH A 14 353 353 HOH HOH . J 5 HOH A 15 354 354 HOH HOH . J 5 HOH A 16 355 355 HOH HOH . J 5 HOH A 17 356 356 HOH HOH . J 5 HOH A 18 357 357 HOH HOH . J 5 HOH A 19 358 358 HOH HOH . J 5 HOH A 20 359 359 HOH HOH . J 5 HOH A 21 360 360 HOH HOH . J 5 HOH A 22 361 361 HOH HOH . J 5 HOH A 23 362 362 HOH HOH . J 5 HOH A 24 363 363 HOH HOH . J 5 HOH A 25 364 364 HOH HOH . J 5 HOH A 26 365 365 HOH HOH . J 5 HOH A 27 366 366 HOH HOH . J 5 HOH A 28 367 367 HOH HOH . J 5 HOH A 29 368 368 HOH HOH . J 5 HOH A 30 369 369 HOH HOH . J 5 HOH A 31 370 370 HOH HOH . J 5 HOH A 32 371 371 HOH HOH . J 5 HOH A 33 372 372 HOH HOH . J 5 HOH A 34 373 373 HOH HOH . J 5 HOH A 35 374 374 HOH HOH . J 5 HOH A 36 375 375 HOH HOH . J 5 HOH A 37 376 376 HOH HOH . J 5 HOH A 38 377 377 HOH HOH . J 5 HOH A 39 378 378 HOH HOH . J 5 HOH A 40 379 379 HOH HOH . J 5 HOH A 41 380 380 HOH HOH . J 5 HOH A 42 381 381 HOH HOH . J 5 HOH A 43 382 382 HOH HOH . J 5 HOH A 44 383 383 HOH HOH . J 5 HOH A 45 384 384 HOH HOH . J 5 HOH A 46 385 385 HOH HOH . J 5 HOH A 47 386 386 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 57.34 -63.396 7.767 1 36.56 ? C1 EDO 3 A 1 HETATM 2 O O1 EDO . . . F 4 56.959 -64.772 7.676 1 35.96 ? O1 EDO 3 A 1 HETATM 3 C C2 EDO . . . F 4 58.102 -62.985 6.503 1 36.33 ? C2 EDO 3 A 1 HETATM 4 O O2 EDO . . . F 4 57.312 -63.192 5.343 1 35.01 ? O2 EDO 3 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #