data_3S61
#
_model_server_result.job_id            1kSaYexUXhuLz-WkTDHIxw 
_model_server_result.datetime_utc      '2024-10-17 03:22:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":444}' 
#
_entry.id    3S61 
#
_exptl.entry_id    3S61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3S61 
_cell.length_a            128.162 
_cell.length_b            128.162 
_cell.length_c            316.514 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     3S61 
_atom_sites.fract_transf_matrix[1][1]    0.007803 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007803 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003159 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 444 440 FAD FAD . 
D 3 ORN A 1 445 441 ORN ORN . 
E 4 NDP A 1 446 442 NDP NDP . 
F 2 FAD B 1 444 440 FAD FAD . 
G 3 ORN B 1 445 441 ORN ORN . 
H 4 NDP B 1 446 442 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 2 3.763 -47.118 21.381 1 74.33 ? PA FAD 444 B 1 
HETATM 2 O O1A FAD . . . F 2 4.901 -47.79 20.637 1 71.16 ? O1A FAD 444 B 1 
HETATM 3 O O2A FAD . . . F 2 3.932 -46.99 22.894 1 71.35 ? O2A FAD 444 B 1 
HETATM 4 O O5B FAD . . . F 2 2.387 -47.878 21.07 1 76.14 ? O5B FAD 444 B 1 
HETATM 5 C C5B FAD . . . F 2 2.292 -49.028 20.264 1 76.46 ? C5B FAD 444 B 1 
HETATM 6 C C4B FAD . . . F 2 1.267 -49.928 20.928 1 75.91 ? C4B FAD 444 B 1 
HETATM 7 O O4B FAD . . . F 2 0.323 -50.418 19.995 1 75.97 ? O4B FAD 444 B 1 
HETATM 8 C C3B FAD . . . F 2 2.004 -51.102 21.499 1 75.8 ? C3B FAD 444 B 1 
HETATM 9 O O3B FAD . . . F 2 1.332 -51.439 22.677 1 75.15 ? O3B FAD 444 B 1 
HETATM 10 C C2B FAD . . . F 2 1.806 -52.155 20.433 1 77 ? C2B FAD 444 B 1 
HETATM 11 O O2B FAD . . . F 2 1.9 -53.477 20.929 1 78.32 ? O2B FAD 444 B 1 
HETATM 12 C C1B FAD . . . F 2 0.436 -51.81 19.867 1 76.6 ? C1B FAD 444 B 1 
HETATM 13 N N9A FAD . . . F 2 0.338 -52.201 18.457 1 77.22 ? N9A FAD 444 B 1 
HETATM 14 C C8A FAD . . . F 2 1.33 -52.138 17.522 1 77.99 ? C8A FAD 444 B 1 
HETATM 15 N N7A FAD . . . F 2 0.859 -52.604 16.344 1 78.11 ? N7A FAD 444 B 1 
HETATM 16 C C5A FAD . . . F 2 -0.428 -52.979 16.509 1 77.77 ? C5A FAD 444 B 1 
HETATM 17 C C6A FAD . . . F 2 -1.374 -53.518 15.633 1 76.5 ? C6A FAD 444 B 1 
HETATM 18 N N6A FAD . . . F 2 -1.223 -53.346 14.327 1 75.93 ? N6A FAD 444 B 1 
HETATM 19 N N1A FAD . . . F 2 -2.639 -53.805 16.1 1 76.27 ? N1A FAD 444 B 1 
HETATM 20 C C2A FAD . . . F 2 -2.97 -53.56 17.42 1 77.28 ? C2A FAD 444 B 1 
HETATM 21 N N3A FAD . . . F 2 -2.029 -53.023 18.286 1 78.45 ? N3A FAD 444 B 1 
HETATM 22 C C4A FAD . . . F 2 -0.771 -52.73 17.84 1 78.22 ? C4A FAD 444 B 1 
HETATM 23 N N1 FAD . . . F 2 9.803 -41.067 24.556 1 78.69 ? N1 FAD 444 B 1 
HETATM 24 C C2 FAD . . . F 2 9.927 -40.164 25.607 1 78.23 ? C2 FAD 444 B 1 
HETATM 25 O O2 FAD . . . F 2 9.362 -39.082 25.554 1 77.64 ? O2 FAD 444 B 1 
HETATM 26 N N3 FAD . . . F 2 10.652 -40.473 26.736 1 78.64 ? N3 FAD 444 B 1 
HETATM 27 C C4 FAD . . . F 2 11.285 -41.697 26.808 1 79.59 ? C4 FAD 444 B 1 
HETATM 28 O O4 FAD . . . F 2 11.934 -41.971 27.819 1 80.66 ? O4 FAD 444 B 1 
HETATM 29 C C4X FAD . . . F 2 11.167 -42.614 25.756 1 78.89 ? C4X FAD 444 B 1 
HETATM 30 N N5 FAD . . . F 2 11.786 -43.839 25.847 1 78.81 ? N5 FAD 444 B 1 
HETATM 31 C C5X FAD . . . F 2 11.683 -44.755 24.816 1 79.62 ? C5X FAD 444 B 1 
HETATM 32 C C6 FAD . . . F 2 12.325 -45.99 24.936 1 80.57 ? C6 FAD 444 B 1 
HETATM 33 C C7 FAD . . . F 2 12.26 -46.936 23.921 1 80.77 ? C7 FAD 444 B 1 
HETATM 34 C C7M FAD . . . F 2 12.973 -48.25 24.084 1 79.87 ? C7M FAD 444 B 1 
HETATM 35 C C8 FAD . . . F 2 11.524 -46.62 22.772 1 81.83 ? C8 FAD 444 B 1 
HETATM 36 C C8M FAD . . . F 2 11.399 -47.611 21.651 1 83.71 ? C8M FAD 444 B 1 
HETATM 37 C C9 FAD . . . F 2 10.87 -45.389 22.642 1 80.39 ? C9 FAD 444 B 1 
HETATM 38 C C9A FAD . . . F 2 10.943 -44.447 23.668 1 79.58 ? C9A FAD 444 B 1 
HETATM 39 N N10 FAD . . . F 2 10.295 -43.22 23.568 1 79.1 ? N10 FAD 444 B 1 
HETATM 40 C C10 FAD . . . F 2 10.419 -42.302 24.614 1 78.77 ? C10 FAD 444 B 1 
HETATM 41 C C1' FAD . . . F 2 9.481 -42.895 22.334 1 78.22 ? C1' FAD 444 B 1 
HETATM 42 C C2' FAD . . . F 2 8.12 -43.632 22.368 1 76.72 ? C2' FAD 444 B 1 
HETATM 43 O O2' FAD . . . F 2 7.618 -43.796 21.066 1 78.3 ? O2' FAD 444 B 1 
HETATM 44 C C3' FAD . . . F 2 7.037 -42.91 23.151 1 75.08 ? C3' FAD 444 B 1 
HETATM 45 O O3' FAD . . . F 2 7.513 -42.769 24.454 1 73.18 ? O3' FAD 444 B 1 
HETATM 46 C C4' FAD . . . F 2 5.676 -43.632 23.204 1 75.25 ? C4' FAD 444 B 1 
HETATM 47 O O4' FAD . . . F 2 5.807 -45.031 23.329 1 75.39 ? O4' FAD 444 B 1 
HETATM 48 C C5' FAD . . . F 2 4.763 -43.32 22.017 1 75.15 ? C5' FAD 444 B 1 
HETATM 49 O O5' FAD . . . F 2 3.482 -43.849 22.28 1 74.69 ? O5' FAD 444 B 1 
HETATM 50 P P FAD . . . F 2 2.603 -44.506 21.103 1 74.15 ? P FAD 444 B 1 
HETATM 51 O O1P FAD . . . F 2 1.288 -44.984 21.668 1 74.12 ? O1P FAD 444 B 1 
HETATM 52 O O2P FAD . . . F 2 2.397 -43.567 19.946 1 73.04 ? O2P FAD 444 B 1 
HETATM 53 O O3P FAD . . . F 2 3.5 -45.735 20.601 1 74.08 ? O3P FAD 444 B 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#