data_3S61 # _model_server_result.job_id jtv2-RV-Vd0esHE03m_Ypg _model_server_result.datetime_utc '2024-10-17 03:29:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":445}' # _entry.id 3S61 # _exptl.entry_id 3S61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.161 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ornithine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S61 _cell.length_a 128.162 _cell.length_b 128.162 _cell.length_c 316.514 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C5 H12 N2 O2' _chem_comp.formula_weight 132.161 _chem_comp.id ORN _chem_comp.mon_nstd_flag n _chem_comp.name L-ornithine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ORN sing 408 n n N H ORN sing 409 n n N H2 ORN sing 410 n n CA CB ORN sing 411 n n CA C ORN sing 412 n n CA HA ORN sing 413 n n CB CG ORN sing 414 n n CB HB2 ORN sing 415 n n CB HB3 ORN sing 416 n n CG CD ORN sing 417 n n CG HG2 ORN sing 418 n n CG HG3 ORN sing 419 n n CD NE ORN sing 420 n n CD HD2 ORN sing 421 n n CD HD3 ORN sing 422 n n NE HE1 ORN sing 423 n n NE HE2 ORN sing 424 n n C O ORN doub 425 n n C OXT ORN sing 426 n n OXT HXT ORN sing 427 n n # _atom_sites.entry_id 3S61 _atom_sites.fract_transf_matrix[1][1] 0.007803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 444 440 FAD FAD . D 3 ORN A 1 445 441 ORN ORN . E 4 NDP A 1 446 442 NDP NDP . F 2 FAD B 1 444 440 FAD FAD . G 3 ORN B 1 445 441 ORN ORN . H 4 NDP B 1 446 442 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ORN . . . D 3 29.523 -36.658 -25.846 1 22.45 ? N ORN 445 A 1 HETATM 2 C CA ORN . . . D 3 29.049 -38.012 -25.48 1 24.14 ? CA ORN 445 A 1 HETATM 3 C CB ORN . . . D 3 27.537 -38.135 -25.697 1 23.44 ? CB ORN 445 A 1 HETATM 4 C CG ORN . . . D 3 26.784 -37.068 -24.922 1 23.58 ? CG ORN 445 A 1 HETATM 5 C CD ORN . . . D 3 25.302 -37.211 -25.187 1 27.99 ? CD ORN 445 A 1 HETATM 6 N NE ORN . . . D 3 24.574 -36.193 -24.48 1 28.43 ? NE ORN 445 A 1 HETATM 7 C C ORN . . . D 3 29.817 -39.116 -26.201 1 24.59 ? C ORN 445 A 1 HETATM 8 O O ORN . . . D 3 30.546 -38.807 -27.178 1 23.68 ? O ORN 445 A 1 HETATM 9 O OXT ORN . . . D 3 29.723 -40.325 -25.794 1 24.95 ? OXT ORN 445 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #