data_3S61 # _model_server_result.job_id Oh84RnYfJm-x7KWWyAFqtg _model_server_result.datetime_utc '2024-10-17 03:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":446}' # _entry.id 3S61 # _exptl.entry_id 3S61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S61 _cell.length_a 128.162 _cell.length_b 128.162 _cell.length_c 316.514 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 326 n n PA O2A NDP sing 327 n n PA O5B NDP sing 328 n n PA O3 NDP sing 329 n n O2A HOA2 NDP sing 330 n n O5B C5B NDP sing 331 n n C5B C4B NDP sing 332 n n C5B H51A NDP sing 333 n n C5B H52A NDP sing 334 n n C4B O4B NDP sing 335 n n C4B C3B NDP sing 336 n n C4B H4B NDP sing 337 n n O4B C1B NDP sing 338 n n C3B O3B NDP sing 339 n n C3B C2B NDP sing 340 n n C3B H3B NDP sing 341 n n O3B HO3A NDP sing 342 n n C2B O2B NDP sing 343 n n C2B C1B NDP sing 344 n n C2B H2B NDP sing 345 n n O2B P2B NDP sing 346 n n C1B N9A NDP sing 347 n n C1B H1B NDP sing 348 n n N9A C8A NDP sing 349 n y N9A C4A NDP sing 350 n y C8A N7A NDP doub 351 n y C8A H8A NDP sing 352 n n N7A C5A NDP sing 353 n y C5A C6A NDP sing 354 n y C5A C4A NDP doub 355 n y C6A N6A NDP sing 356 n n C6A N1A NDP doub 357 n y N6A H61A NDP sing 358 n n N6A H62A NDP sing 359 n n N1A C2A NDP sing 360 n y C2A N3A NDP doub 361 n y C2A H2A NDP sing 362 n n N3A C4A NDP sing 363 n y O3 PN NDP sing 364 n n PN O1N NDP doub 365 n n PN O2N NDP sing 366 n n PN O5D NDP sing 367 n n O2N H21N NDP sing 368 n n O5D C5D NDP sing 369 n n C5D C4D NDP sing 370 n n C5D H51N NDP sing 371 n n C5D H52N NDP sing 372 n n C4D O4D NDP sing 373 n n C4D C3D NDP sing 374 n n C4D H4D NDP sing 375 n n O4D C1D NDP sing 376 n n C3D O3D NDP sing 377 n n C3D C2D NDP sing 378 n n C3D H3D NDP sing 379 n n O3D HO3N NDP sing 380 n n C2D O2D NDP sing 381 n n C2D C1D NDP sing 382 n n C2D H2D NDP sing 383 n n O2D HO2N NDP sing 384 n n C1D N1N NDP sing 385 n n C1D H1D NDP sing 386 n n N1N C2N NDP sing 387 n n N1N C6N NDP sing 388 n n C2N C3N NDP doub 389 n n C2N H2N NDP sing 390 n n C3N C7N NDP sing 391 n n C3N C4N NDP sing 392 n n C7N O7N NDP doub 393 n n C7N N7N NDP sing 394 n n N7N H71N NDP sing 395 n n N7N H72N NDP sing 396 n n C4N C5N NDP sing 397 n n C4N H41N NDP sing 398 n n C4N H42N NDP sing 399 n n C5N C6N NDP doub 400 n n C5N H5N NDP sing 401 n n C6N H6N NDP sing 402 n n P2B O1X NDP doub 403 n n P2B O2X NDP sing 404 n n P2B O3X NDP sing 405 n n O2X HOP2 NDP sing 406 n n O3X HOP3 NDP sing 407 n n # _atom_sites.entry_id 3S61 _atom_sites.fract_transf_matrix[1][1] 0.007803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 444 440 FAD FAD . D 3 ORN A 1 445 441 ORN ORN . E 4 NDP A 1 446 442 NDP NDP . F 2 FAD B 1 444 440 FAD FAD . G 3 ORN B 1 445 441 ORN ORN . H 4 NDP B 1 446 442 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 4 18.129 -32.298 -18.389 1 84.54 ? PA NDP 446 A 1 HETATM 2 O O1A NDP . . . E 4 19.51 -32.304 -17.909 1 84.67 ? O1A NDP 446 A 1 HETATM 3 O O2A NDP . . . E 4 17.376 -33.353 -17.687 1 85.18 ? O2A NDP 446 A 1 HETATM 4 O O5B NDP . . . E 4 17.516 -30.822 -18.249 1 84.04 ? O5B NDP 446 A 1 HETATM 5 C C5B NDP . . . E 4 16.528 -30.568 -17.292 1 84.53 ? C5B NDP 446 A 1 HETATM 6 C C4B NDP . . . E 4 16.159 -29.104 -17.366 1 85.25 ? C4B NDP 446 A 1 HETATM 7 O O4B NDP . . . E 4 15.022 -28.877 -16.561 1 86.39 ? O4B NDP 446 A 1 HETATM 8 C C3B NDP . . . E 4 17.273 -28.251 -16.806 1 86.09 ? C3B NDP 446 A 1 HETATM 9 O O3B NDP . . . E 4 17.432 -27.14 -17.655 1 85.22 ? O3B NDP 446 A 1 HETATM 10 C C2B NDP . . . E 4 16.776 -27.842 -15.433 1 87.33 ? C2B NDP 446 A 1 HETATM 11 O O2B NDP . . . E 4 17.202 -26.541 -15.104 1 89.44 ? O2B NDP 446 A 1 HETATM 12 C C1B NDP . . . E 4 15.258 -27.925 -15.54 1 86.83 ? C1B NDP 446 A 1 HETATM 13 N N9A NDP . . . E 4 14.588 -28.256 -14.248 1 86.62 ? N9A NDP 446 A 1 HETATM 14 C C8A NDP . . . E 4 14.625 -29.439 -13.538 1 85.7 ? C8A NDP 446 A 1 HETATM 15 N N7A NDP . . . E 4 13.882 -29.307 -12.42 1 85.53 ? N7A NDP 446 A 1 HETATM 16 C C5A NDP . . . E 4 13.365 -28.054 -12.39 1 86.89 ? C5A NDP 446 A 1 HETATM 17 C C6A NDP . . . E 4 12.542 -27.38 -11.474 1 87.18 ? C6A NDP 446 A 1 HETATM 18 N N6A NDP . . . E 4 12.093 -27.995 -10.387 1 86.58 ? N6A NDP 446 A 1 HETATM 19 N N1A NDP . . . E 4 12.175 -26.063 -11.713 1 87.88 ? N1A NDP 446 A 1 HETATM 20 C C2A NDP . . . E 4 12.619 -25.419 -12.865 1 88.47 ? C2A NDP 446 A 1 HETATM 21 N N3A NDP . . . E 4 13.435 -26.079 -13.78 1 87.29 ? N3A NDP 446 A 1 HETATM 22 C C4A NDP . . . E 4 13.8 -27.38 -13.54 1 87.06 ? C4A NDP 446 A 1 HETATM 23 O O3 NDP . . . E 4 18.145 -32.56 -19.974 1 85.97 ? O3 NDP 446 A 1 HETATM 24 P PN NDP . . . E 4 16.869 -33.026 -20.846 1 84.98 ? PN NDP 446 A 1 HETATM 25 O O1N NDP . . . E 4 15.737 -33.399 -19.995 1 85.43 ? O1N NDP 446 A 1 HETATM 26 O O2N NDP . . . E 4 16.663 -31.958 -21.844 1 83.84 ? O2N NDP 446 A 1 HETATM 27 O O5D NDP . . . E 4 17.42 -34.401 -21.489 1 84.14 ? O5D NDP 446 A 1 HETATM 28 C C5D NDP . . . E 4 17.929 -35.464 -20.704 1 82.62 ? C5D NDP 446 A 1 HETATM 29 C C4D NDP . . . E 4 18.776 -36.39 -21.57 1 81.85 ? C4D NDP 446 A 1 HETATM 30 O O4D NDP . . . E 4 18.206 -36.574 -22.856 1 81.84 ? O4D NDP 446 A 1 HETATM 31 C C3D NDP . . . E 4 20.137 -35.802 -21.84 1 82.11 ? C3D NDP 446 A 1 HETATM 32 O O3D NDP . . . E 4 21.013 -36.899 -21.943 1 83.58 ? O3D NDP 446 A 1 HETATM 33 C C2D NDP . . . E 4 19.972 -35.141 -23.19 1 81.47 ? C2D NDP 446 A 1 HETATM 34 O O2D NDP . . . E 4 21.134 -34.998 -23.954 1 81.23 ? O2D NDP 446 A 1 HETATM 35 C C1D NDP . . . E 4 19.072 -36.119 -23.887 1 80.86 ? C1D NDP 446 A 1 HETATM 36 N N1N NDP . . . E 4 18.429 -35.422 -25.018 1 80.33 ? N1N NDP 446 A 1 HETATM 37 C C2N NDP . . . E 4 18.916 -35.707 -26.259 1 80.97 ? C2N NDP 446 A 1 HETATM 38 C C3N NDP . . . E 4 18.201 -35.456 -27.433 1 80.41 ? C3N NDP 446 A 1 HETATM 39 C C7N NDP . . . E 4 18.815 -35.808 -28.763 1 79.98 ? C7N NDP 446 A 1 HETATM 40 O O7N NDP . . . E 4 18.611 -34.93 -29.841 1 79.82 ? O7N NDP 446 A 1 HETATM 41 N N7N NDP . . . E 4 19.554 -36.914 -28.899 1 79.15 ? N7N NDP 446 A 1 HETATM 42 C C4N NDP . . . E 4 16.833 -34.815 -27.382 1 79.66 ? C4N NDP 446 A 1 HETATM 43 C C5N NDP . . . E 4 16.395 -34.52 -25.978 1 79.22 ? C5N NDP 446 A 1 HETATM 44 C C6N NDP . . . E 4 17.199 -34.833 -24.885 1 80.04 ? C6N NDP 446 A 1 HETATM 45 P P2B NDP . . . E 4 18.543 -26.325 -14.242 1 90.73 ? P2B NDP 446 A 1 HETATM 46 O O1X NDP . . . E 4 18.478 -27.297 -13.084 1 90.11 ? O1X NDP 446 A 1 HETATM 47 O O2X NDP . . . E 4 18.582 -24.89 -13.75 1 91.13 ? O2X NDP 446 A 1 HETATM 48 O O3X NDP . . . E 4 19.758 -26.6 -15.1 1 90.01 ? O3X NDP 446 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #