data_3S61
#
_model_server_result.job_id            CQoKUpsf8NgQ1sMXymrZMw 
_model_server_result.datetime_utc      '2024-10-17 03:28:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":446}' 
#
_entry.id    3S61 
#
_exptl.entry_id    3S61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3S61 
_cell.length_a            128.162 
_cell.length_b            128.162 
_cell.length_c            316.514 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 326 n n 
PA O2A NDP sing 327 n n 
PA O5B NDP sing 328 n n 
PA O3 NDP sing 329 n n 
O2A HOA2 NDP sing 330 n n 
O5B C5B NDP sing 331 n n 
C5B C4B NDP sing 332 n n 
C5B H51A NDP sing 333 n n 
C5B H52A NDP sing 334 n n 
C4B O4B NDP sing 335 n n 
C4B C3B NDP sing 336 n n 
C4B H4B NDP sing 337 n n 
O4B C1B NDP sing 338 n n 
C3B O3B NDP sing 339 n n 
C3B C2B NDP sing 340 n n 
C3B H3B NDP sing 341 n n 
O3B HO3A NDP sing 342 n n 
C2B O2B NDP sing 343 n n 
C2B C1B NDP sing 344 n n 
C2B H2B NDP sing 345 n n 
O2B P2B NDP sing 346 n n 
C1B N9A NDP sing 347 n n 
C1B H1B NDP sing 348 n n 
N9A C8A NDP sing 349 n y 
N9A C4A NDP sing 350 n y 
C8A N7A NDP doub 351 n y 
C8A H8A NDP sing 352 n n 
N7A C5A NDP sing 353 n y 
C5A C6A NDP sing 354 n y 
C5A C4A NDP doub 355 n y 
C6A N6A NDP sing 356 n n 
C6A N1A NDP doub 357 n y 
N6A H61A NDP sing 358 n n 
N6A H62A NDP sing 359 n n 
N1A C2A NDP sing 360 n y 
C2A N3A NDP doub 361 n y 
C2A H2A NDP sing 362 n n 
N3A C4A NDP sing 363 n y 
O3 PN NDP sing 364 n n 
PN O1N NDP doub 365 n n 
PN O2N NDP sing 366 n n 
PN O5D NDP sing 367 n n 
O2N H21N NDP sing 368 n n 
O5D C5D NDP sing 369 n n 
C5D C4D NDP sing 370 n n 
C5D H51N NDP sing 371 n n 
C5D H52N NDP sing 372 n n 
C4D O4D NDP sing 373 n n 
C4D C3D NDP sing 374 n n 
C4D H4D NDP sing 375 n n 
O4D C1D NDP sing 376 n n 
C3D O3D NDP sing 377 n n 
C3D C2D NDP sing 378 n n 
C3D H3D NDP sing 379 n n 
O3D HO3N NDP sing 380 n n 
C2D O2D NDP sing 381 n n 
C2D C1D NDP sing 382 n n 
C2D H2D NDP sing 383 n n 
O2D HO2N NDP sing 384 n n 
C1D N1N NDP sing 385 n n 
C1D H1D NDP sing 386 n n 
N1N C2N NDP sing 387 n n 
N1N C6N NDP sing 388 n n 
C2N C3N NDP doub 389 n n 
C2N H2N NDP sing 390 n n 
C3N C7N NDP sing 391 n n 
C3N C4N NDP sing 392 n n 
C7N O7N NDP doub 393 n n 
C7N N7N NDP sing 394 n n 
N7N H71N NDP sing 395 n n 
N7N H72N NDP sing 396 n n 
C4N C5N NDP sing 397 n n 
C4N H41N NDP sing 398 n n 
C4N H42N NDP sing 399 n n 
C5N C6N NDP doub 400 n n 
C5N H5N NDP sing 401 n n 
C6N H6N NDP sing 402 n n 
P2B O1X NDP doub 403 n n 
P2B O2X NDP sing 404 n n 
P2B O3X NDP sing 405 n n 
O2X HOP2 NDP sing 406 n n 
O3X HOP3 NDP sing 407 n n 
#
_atom_sites.entry_id                     3S61 
_atom_sites.fract_transf_matrix[1][1]    0.007803 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007803 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003159 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 444 440 FAD FAD . 
D 3 ORN A 1 445 441 ORN ORN . 
E 4 NDP A 1 446 442 NDP NDP . 
F 2 FAD B 1 444 440 FAD FAD . 
G 3 ORN B 1 445 441 ORN ORN . 
H 4 NDP B 1 446 442 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . H 4 18.33 -44.212 17.375 1 73.81 ? PA NDP 446 B 1 
HETATM 2 O O1A NDP . . . H 4 18.855 -42.892 17.048 1 75.27 ? O1A NDP 446 B 1 
HETATM 3 O O2A NDP . . . H 4 17.13 -44.469 16.533 1 73.67 ? O2A NDP 446 B 1 
HETATM 4 O O5B NDP . . . H 4 19.608 -45.119 17.171 1 73.99 ? O5B NDP 446 B 1 
HETATM 5 C C5B NDP . . . H 4 19.976 -45.523 15.896 1 76.51 ? C5B NDP 446 B 1 
HETATM 6 C C4B NDP . . . H 4 21.354 -46.067 16.148 1 77.78 ? C4B NDP 446 B 1 
HETATM 7 O O4B NDP . . . H 4 21.616 -47.138 15.277 1 79.21 ? O4B NDP 446 B 1 
HETATM 8 C C3B NDP . . . H 4 22.319 -44.972 15.817 1 78.93 ? C3B NDP 446 B 1 
HETATM 9 O O3B NDP . . . H 4 23.376 -45.098 16.74 1 78.7 ? O3B NDP 446 B 1 
HETATM 10 C C2B NDP . . . H 4 22.688 -45.322 14.384 1 79.4 ? C2B NDP 446 B 1 
HETATM 11 O O2B NDP . . . H 4 23.922 -44.733 14.047 1 78.38 ? O2B NDP 446 B 1 
HETATM 12 C C1B NDP . . . H 4 22.667 -46.863 14.385 1 79.78 ? C1B NDP 446 B 1 
HETATM 13 N N9A NDP . . . H 4 22.401 -47.539 13.071 1 80.83 ? N9A NDP 446 B 1 
HETATM 14 C C8A NDP . . . H 4 21.22 -47.493 12.347 1 80.08 ? C8A NDP 446 B 1 
HETATM 15 N N7A NDP . . . H 4 21.385 -48.232 11.218 1 80.51 ? N7A NDP 446 B 1 
HETATM 16 C C5A NDP . . . H 4 22.644 -48.755 11.201 1 80.28 ? C5A NDP 446 B 1 
HETATM 17 C C6A NDP . . . H 4 23.32 -49.561 10.284 1 79.51 ? C6A NDP 446 B 1 
HETATM 18 N N6A NDP . . . H 4 22.597 -50.094 9.292 1 78.76 ? N6A NDP 446 B 1 
HETATM 19 N N1A NDP . . . H 4 24.628 -49.971 10.493 1 79.6 ? N1A NDP 446 B 1 
HETATM 20 C C2A NDP . . . H 4 25.267 -49.551 11.651 1 80.69 ? C2A NDP 446 B 1 
HETATM 21 N N3A NDP . . . H 4 24.606 -48.736 12.574 1 80.27 ? N3A NDP 446 B 1 
HETATM 22 C C4A NDP . . . H 4 23.303 -48.343 12.362 1 80.59 ? C4A NDP 446 B 1 
HETATM 23 O O3 NDP . . . H 4 18.113 -44.424 18.964 1 75.68 ? O3 NDP 446 B 1 
HETATM 24 P PN NDP . . . H 4 17.59 -45.719 19.811 1 75.27 ? PN NDP 446 B 1 
HETATM 25 O O1N NDP . . . H 4 17.113 -46.846 19.016 1 75.99 ? O1N NDP 446 B 1 
HETATM 26 O O2N NDP . . . H 4 18.587 -46.059 20.836 1 76.52 ? O2N NDP 446 B 1 
HETATM 27 O O5D NDP . . . H 4 16.282 -45.047 20.442 1 76.15 ? O5D NDP 446 B 1 
HETATM 28 C C5D NDP . . . H 4 15.364 -44.388 19.587 1 77.18 ? C5D NDP 446 B 1 
HETATM 29 C C4D NDP . . . H 4 14.36 -43.628 20.432 1 78.29 ? C4D NDP 446 B 1 
HETATM 30 O O4D NDP . . . H 4 14.138 -44.295 21.669 1 79.68 ? O4D NDP 446 B 1 
HETATM 31 C C3D NDP . . . H 4 14.907 -42.29 20.833 1 79.01 ? C3D NDP 446 B 1 
HETATM 32 O O3D NDP . . . H 4 13.764 -41.492 21.069 1 78.89 ? O3D NDP 446 B 1 
HETATM 33 C C2D NDP . . . H 4 15.658 -42.667 22.106 1 79.16 ? C2D NDP 446 B 1 
HETATM 34 O O2D NDP . . . H 4 16.11 -41.556 22.853 1 80.36 ? O2D NDP 446 B 1 
HETATM 35 C C1D NDP . . . H 4 14.622 -43.559 22.776 1 78.04 ? C1D NDP 446 B 1 
HETATM 36 N N1N NDP . . . H 4 15.129 -44.481 23.809 1 76.8 ? N1N NDP 446 B 1 
HETATM 37 C C2N NDP . . . H 4 14.932 -44.137 25.114 1 76.58 ? C2N NDP 446 B 1 
HETATM 38 C C3N NDP . . . H 4 15.279 -44.967 26.186 1 76.92 ? C3N NDP 446 B 1 
HETATM 39 C C7N NDP . . . H 4 15.022 -44.474 27.601 1 78.13 ? C7N NDP 446 B 1 
HETATM 40 O O7N NDP . . . H 4 15.676 -45.04 28.723 1 78.56 ? O7N NDP 446 B 1 
HETATM 41 N N7N NDP . . . H 4 14.144 -43.482 27.788 1 79.07 ? N7N NDP 446 B 1 
HETATM 42 C C4N NDP . . . H 4 15.89 -46.333 25.926 1 75.46 ? C4N NDP 446 B 1 
HETATM 43 C C5N NDP . . . H 4 16.054 -46.618 24.458 1 76.15 ? C5N NDP 446 B 1 
HETATM 44 C C6N NDP . . . H 4 15.669 -45.699 23.481 1 76.53 ? C6N NDP 446 B 1 
HETATM 45 P P2B NDP . . . H 4 24.038 -43.448 13.107 1 76.95 ? P2B NDP 446 B 1 
HETATM 46 O O1X NDP . . . H 4 23.029 -43.642 12 1 75.85 ? O1X NDP 446 B 1 
HETATM 47 O O2X NDP . . . H 4 25.462 -43.443 12.573 1 76.5 ? O2X NDP 446 B 1 
HETATM 48 O O3X NDP . . . H 4 23.745 -42.199 13.92 1 75.68 ? O3X NDP 446 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           48 
#