data_3S65
#
_model_server_result.job_id            8Kf8KttSjTitSinfWlrOZw 
_model_server_result.datetime_utc      '2024-10-18 16:23:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s65 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":142}' 
#
_entry.id    3S65 
#
_exptl.entry_id    3S65 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3S65 
_cell.length_a            57.784 
_cell.length_b            58.748 
_cell.length_c            172.869 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S65 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc2 E FE HEM . A HEM 142 1_555 F C CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc4 G FE HEM . B HEM 147 1_555 H C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? 
metalc ? metalc5 C NE2 HIS 87 C HIS 87 1_555 I FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc6 I FE HEM . C HEM 142 1_555 J C CMO . C CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
metalc ? metalc7 D NE2 HIS 92 D HIS 92 1_555 K FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc8 K FE HEM . D HEM 147 1_555 L C CMO . D CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 130 n n 
CHA C4D HEM doub 131 n n 
CHA HHA HEM sing 132 n n 
CHB C4A HEM sing 133 n n 
CHB C1B HEM doub 134 n n 
CHB HHB HEM sing 135 n n 
CHC C4B HEM sing 136 n n 
CHC C1C HEM doub 137 n n 
CHC HHC HEM sing 138 n n 
CHD C4C HEM doub 139 n n 
CHD C1D HEM sing 140 n n 
CHD HHD HEM sing 141 n n 
C1A C2A HEM doub 142 n y 
C1A NA HEM sing 143 n y 
C2A C3A HEM sing 144 n y 
C2A CAA HEM sing 145 n n 
C3A C4A HEM doub 146 n y 
C3A CMA HEM sing 147 n n 
C4A NA HEM sing 148 n y 
CMA HMA HEM sing 149 n n 
CMA HMAA HEM sing 150 n n 
CMA HMAB HEM sing 151 n n 
CAA CBA HEM sing 152 n n 
CAA HAA HEM sing 153 n n 
CAA HAAA HEM sing 154 n n 
CBA CGA HEM sing 155 n n 
CBA HBA HEM sing 156 n n 
CBA HBAA HEM sing 157 n n 
CGA O1A HEM doub 158 n n 
CGA O2A HEM sing 159 n n 
C1B C2B HEM sing 160 n n 
C1B NB HEM sing 161 n n 
C2B C3B HEM doub 162 n n 
C2B CMB HEM sing 163 n n 
C3B C4B HEM sing 164 n n 
C3B CAB HEM sing 165 n n 
C4B NB HEM doub 166 n n 
CMB HMB HEM sing 167 n n 
CMB HMBA HEM sing 168 n n 
CMB HMBB HEM sing 169 n n 
CAB CBB HEM doub 170 n n 
CAB HAB HEM sing 171 n n 
CBB HBB HEM sing 172 n n 
CBB HBBA HEM sing 173 n n 
C1C C2C HEM sing 174 n y 
C1C NC HEM sing 175 n y 
C2C C3C HEM doub 176 n y 
C2C CMC HEM sing 177 n n 
C3C C4C HEM sing 178 n y 
C3C CAC HEM sing 179 n n 
C4C NC HEM sing 180 n y 
CMC HMC HEM sing 181 n n 
CMC HMCA HEM sing 182 n n 
CMC HMCB HEM sing 183 n n 
CAC CBC HEM doub 184 n n 
CAC HAC HEM sing 185 n n 
CBC HBC HEM sing 186 n n 
CBC HBCA HEM sing 187 n n 
C1D C2D HEM sing 188 n n 
C1D ND HEM doub 189 n n 
C2D C3D HEM doub 190 n n 
C2D CMD HEM sing 191 n n 
C3D C4D HEM sing 192 n n 
C3D CAD HEM sing 193 n n 
C4D ND HEM sing 194 n n 
CMD HMD HEM sing 195 n n 
CMD HMDA HEM sing 196 n n 
CMD HMDB HEM sing 197 n n 
CAD CBD HEM sing 198 n n 
CAD HAD HEM sing 199 n n 
CAD HADA HEM sing 200 n n 
CBD CGD HEM sing 201 n n 
CBD HBD HEM sing 202 n n 
CBD HBDA HEM sing 203 n n 
CGD O1D HEM doub 204 n n 
CGD O2D HEM sing 205 n n 
O2A H2A HEM sing 206 n n 
O2D H2D HEM sing 207 n n 
FE NA HEM sing 208 n n 
FE NB HEM sing 209 n n 
FE NC HEM sing 210 n n 
FE ND HEM sing 211 n n 
#
_atom_sites.entry_id                     3S65 
_atom_sites.fract_transf_matrix[1][1]    0.017306 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017022 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 142 142 HEM HEM . 
F 4 CMO A 1 143 143 CMO CMO . 
G 3 HEM B 1 147 147 HEM HEM . 
H 4 CMO B 1 148 148 CMO CMO . 
I 3 HEM C 1 142 142 HEM HEM . 
J 4 CMO C 1 143 143 CMO CMO . 
K 3 HEM D 1 147 147 HEM HEM . 
L 4 CMO D 1 148 148 CMO CMO . 
M 5 HOH A 1 144 2 HOH HOH . 
M 5 HOH A 2 145 3 HOH HOH . 
M 5 HOH A 3 146 4 HOH HOH . 
M 5 HOH A 4 147 7 HOH HOH . 
M 5 HOH A 5 148 9 HOH HOH . 
M 5 HOH A 6 149 11 HOH HOH . 
M 5 HOH A 7 150 17 HOH HOH . 
M 5 HOH A 8 151 20 HOH HOH . 
M 5 HOH A 9 152 21 HOH HOH . 
M 5 HOH A 10 153 23 HOH HOH . 
M 5 HOH A 11 154 31 HOH HOH . 
M 5 HOH A 12 155 32 HOH HOH . 
M 5 HOH A 13 156 41 HOH HOH . 
M 5 HOH A 14 157 44 HOH HOH . 
M 5 HOH A 15 158 48 HOH HOH . 
M 5 HOH A 16 159 51 HOH HOH . 
M 5 HOH A 17 160 54 HOH HOH . 
M 5 HOH A 18 161 55 HOH HOH . 
M 5 HOH A 19 162 58 HOH HOH . 
M 5 HOH A 20 163 65 HOH HOH . 
M 5 HOH A 21 164 66 HOH HOH . 
M 5 HOH A 22 165 68 HOH HOH . 
M 5 HOH A 23 166 70 HOH HOH . 
N 5 HOH B 1 149 5 HOH HOH . 
N 5 HOH B 2 150 6 HOH HOH . 
N 5 HOH B 3 151 15 HOH HOH . 
N 5 HOH B 4 152 24 HOH HOH . 
N 5 HOH B 5 153 28 HOH HOH . 
N 5 HOH B 6 154 29 HOH HOH . 
N 5 HOH B 7 155 37 HOH HOH . 
N 5 HOH B 8 156 38 HOH HOH . 
N 5 HOH B 9 157 39 HOH HOH . 
N 5 HOH B 10 158 42 HOH HOH . 
N 5 HOH B 11 159 50 HOH HOH . 
N 5 HOH B 12 160 53 HOH HOH . 
N 5 HOH B 13 161 56 HOH HOH . 
N 5 HOH B 14 162 60 HOH HOH . 
N 5 HOH B 15 163 62 HOH HOH . 
O 5 HOH C 1 144 1 HOH HOH . 
O 5 HOH C 2 145 8 HOH HOH . 
O 5 HOH C 3 146 10 HOH HOH . 
O 5 HOH C 4 147 13 HOH HOH . 
O 5 HOH C 5 148 14 HOH HOH . 
O 5 HOH C 6 149 18 HOH HOH . 
O 5 HOH C 7 150 19 HOH HOH . 
O 5 HOH C 8 151 25 HOH HOH . 
O 5 HOH C 9 152 27 HOH HOH . 
O 5 HOH C 10 153 30 HOH HOH . 
O 5 HOH C 11 154 33 HOH HOH . 
O 5 HOH C 12 155 34 HOH HOH . 
O 5 HOH C 13 156 36 HOH HOH . 
O 5 HOH C 14 157 40 HOH HOH . 
O 5 HOH C 15 158 43 HOH HOH . 
O 5 HOH C 16 159 45 HOH HOH . 
O 5 HOH C 17 160 47 HOH HOH . 
O 5 HOH C 18 161 63 HOH HOH . 
O 5 HOH C 19 162 67 HOH HOH . 
O 5 HOH C 20 163 69 HOH HOH . 
P 5 HOH D 1 149 12 HOH HOH . 
P 5 HOH D 2 150 16 HOH HOH . 
P 5 HOH D 3 151 26 HOH HOH . 
P 5 HOH D 4 152 35 HOH HOH . 
P 5 HOH D 5 153 46 HOH HOH . 
P 5 HOH D 6 154 49 HOH HOH . 
P 5 HOH D 7 155 52 HOH HOH . 
P 5 HOH D 8 156 57 HOH HOH . 
P 5 HOH D 9 157 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . I 3 17.766 -15.593 -3.452 1 44.4 ? CHA HEM 142 C 1 
HETATM 2 C CHB HEM . . . I 3 21.913 -13.705 -4.861 1 40.43 ? CHB HEM 142 C 1 
HETATM 3 C CHC HEM . . . I 3 19.017 -10.667 -7.347 1 27.22 ? CHC HEM 142 C 1 
HETATM 4 C CHD HEM . . . I 3 14.85 -12.219 -5.562 1 52.76 ? CHD HEM 142 C 1 
HETATM 5 C C1A HEM . . . I 3 19.118 -15.343 -3.557 1 43.78 ? C1A HEM 142 C 1 
HETATM 6 C C2A HEM . . . I 3 20.225 -16.033 -2.875 1 50.26 ? C2A HEM 142 C 1 
HETATM 7 C C3A HEM . . . I 3 21.367 -15.511 -3.278 1 46.52 ? C3A HEM 142 C 1 
HETATM 8 C C4A HEM . . . I 3 21.032 -14.485 -4.222 1 44.67 ? C4A HEM 142 C 1 
HETATM 9 C CMA HEM . . . I 3 22.79 -15.909 -2.842 1 45.11 ? CMA HEM 142 C 1 
HETATM 10 C CAA HEM . . . I 3 20.194 -17.183 -1.851 1 55.87 ? CAA HEM 142 C 1 
HETATM 11 C CBA HEM . . . I 3 18.796 -17.393 -1.317 1 64.75 ? CBA HEM 142 C 1 
HETATM 12 C CGA HEM . . . I 3 18.876 -18.688 -0.573 1 73.72 ? CGA HEM 142 C 1 
HETATM 13 O O1A HEM . . . I 3 20.024 -19.078 -0.205 1 76.2 ? O1A HEM 142 C 1 
HETATM 14 O O2A HEM . . . I 3 17.801 -19.309 -0.379 1 73.35 ? O2A HEM 142 C 1 
HETATM 15 C C1B HEM . . . I 3 21.358 -12.74 -5.647 1 39.56 ? C1B HEM 142 C 1 
HETATM 16 C C2B HEM . . . I 3 22.155 -11.79 -6.384 1 23.48 ? C2B HEM 142 C 1 
HETATM 17 C C3B HEM . . . I 3 21.333 -10.985 -7.025 1 30.86 ? C3B HEM 142 C 1 
HETATM 18 C C4B HEM . . . I 3 20.002 -11.397 -6.733 1 35.75 ? C4B HEM 142 C 1 
HETATM 19 C CMB HEM . . . I 3 23.695 -11.729 -6.415 1 32.08 ? CMB HEM 142 C 1 
HETATM 20 C CAB HEM . . . I 3 21.661 -9.799 -7.966 1 35.56 ? CAB HEM 142 C 1 
HETATM 21 C CBB HEM . . . I 3 22.919 -9.47 -8.286 1 36.88 ? CBB HEM 142 C 1 
HETATM 22 C C1C HEM . . . I 3 17.69 -10.757 -7.066 1 28.9 ? C1C HEM 142 C 1 
HETATM 23 C C2C HEM . . . I 3 16.67 -9.863 -7.533 1 33.73 ? C2C HEM 142 C 1 
HETATM 24 C C3C HEM . . . I 3 15.506 -10.31 -7.047 1 28.03 ? C3C HEM 142 C 1 
HETATM 25 C C4C HEM . . . I 3 15.767 -11.471 -6.252 1 39.02 ? C4C HEM 142 C 1 
HETATM 26 C CMC HEM . . . I 3 16.923 -8.647 -8.472 1 43.19 ? CMC HEM 142 C 1 
HETATM 27 C CAC HEM . . . I 3 14.098 -9.729 -7.23 1 30.46 ? CAC HEM 142 C 1 
HETATM 28 C CBC HEM . . . I 3 13.904 -8.419 -7.119 1 35.98 ? CBC HEM 142 C 1 
HETATM 29 C C1D HEM . . . I 3 15.271 -13.284 -4.814 1 47.66 ? C1D HEM 142 C 1 
HETATM 30 C C2D HEM . . . I 3 14.406 -14.153 -4.057 1 40.12 ? C2D HEM 142 C 1 
HETATM 31 C C3D HEM . . . I 3 15.343 -15.177 -3.429 1 47.84 ? C3D HEM 142 C 1 
HETATM 32 C C4D HEM . . . I 3 16.677 -14.841 -3.854 1 47.57 ? C4D HEM 142 C 1 
HETATM 33 C CMD HEM . . . I 3 12.867 -14.104 -3.884 1 37.18 ? CMD HEM 142 C 1 
HETATM 34 C CAD HEM . . . I 3 14.921 -16.344 -2.514 1 55.06 ? CAD HEM 142 C 1 
HETATM 35 C CBD HEM . . . I 3 15.192 -15.964 -1.073 1 63.53 ? CBD HEM 142 C 1 
HETATM 36 C CGD HEM . . . I 3 15.06 -17.222 -0.264 1 68.52 ? CGD HEM 142 C 1 
HETATM 37 O O1D HEM . . . I 3 14.022 -17.923 -0.418 1 71.62 ? O1D HEM 142 C 1 
HETATM 38 O O2D HEM . . . I 3 16.002 -17.5 0.521 1 63.51 ? O2D HEM 142 C 1 
HETATM 39 N NA HEM . . . I 3 19.663 -14.385 -4.373 1 47.16 ? NA HEM 142 C 1 
HETATM 40 N NB HEM . . . I 3 19.998 -12.519 -5.833 1 22.18 ? NB HEM 142 C 1 
HETATM 41 N NC HEM . . . I 3 17.107 -11.723 -6.275 1 42.51 ? NC HEM 142 C 1 
HETATM 42 N ND HEM . . . I 3 16.603 -13.708 -4.695 1 44.13 ? ND HEM 142 C 1 
HETATM 43 FE FE HEM . . . I 3 18.287 -12.96 -5.221 1 47.91 ? FE HEM 142 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#