data_3S79 # _model_server_result.job_id jiOGawhupyZv2eBQRQDm_Q _model_server_result.datetime_utc '2024-11-20 11:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":506}' # _entry.id 3S79 # _exptl.entry_id 3S79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S79 _cell.length_a 140.218 _cell.length_b 140.218 _cell.length_c 119.271 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 437 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.443 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 392 n n P O2 PO4 sing 393 n n P O3 PO4 sing 394 n n P O4 PO4 sing 395 n n # _atom_sites.entry_id 3S79 _atom_sites.fract_transf_matrix[1][1] 0.007132 _atom_sites.fract_transf_matrix[1][2] 0.004118 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 ASD A 1 601 601 ASD ASD . D 4 PO4 A 1 504 60 PO4 PO4 . E 4 PO4 A 1 505 61 PO4 PO4 . F 4 PO4 A 1 506 62 PO4 PO4 . G 5 HOH A 1 507 1 HOH HOH . G 5 HOH A 2 508 2 HOH HOH . G 5 HOH A 3 509 3 HOH HOH . G 5 HOH A 4 510 4 HOH HOH . G 5 HOH A 5 511 5 HOH HOH . G 5 HOH A 6 512 7 HOH HOH . G 5 HOH A 7 513 8 HOH HOH . G 5 HOH A 8 514 9 HOH HOH . G 5 HOH A 9 515 10 HOH HOH . G 5 HOH A 10 516 12 HOH HOH . G 5 HOH A 11 517 14 HOH HOH . G 5 HOH A 12 518 15 HOH HOH . G 5 HOH A 13 519 16 HOH HOH . G 5 HOH A 14 520 18 HOH HOH . G 5 HOH A 15 521 20 HOH HOH . G 5 HOH A 16 522 24 HOH HOH . G 5 HOH A 17 523 25 HOH HOH . G 5 HOH A 18 524 26 HOH HOH . G 5 HOH A 19 525 27 HOH HOH . G 5 HOH A 20 526 30 HOH HOH . G 5 HOH A 21 527 31 HOH HOH . G 5 HOH A 22 528 32 HOH HOH . G 5 HOH A 23 529 33 HOH HOH . G 5 HOH A 24 530 35 HOH HOH . G 5 HOH A 25 531 36 HOH HOH . G 5 HOH A 26 532 40 HOH HOH . G 5 HOH A 27 533 45 HOH HOH . G 5 HOH A 28 534 48 HOH HOH . G 5 HOH A 29 535 49 HOH HOH . G 5 HOH A 30 536 50 HOH HOH . G 5 HOH A 31 537 52 HOH HOH . G 5 HOH A 32 538 53 HOH HOH . G 5 HOH A 33 539 54 HOH HOH . G 5 HOH A 34 540 55 HOH HOH . G 5 HOH A 35 541 56 HOH HOH . G 5 HOH A 36 542 57 HOH HOH . G 5 HOH A 37 543 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 4 75.802 22.243 45.912 0.6 107.3 ? P PO4 506 A 1 HETATM 2 O O1 PO4 . . . F 4 75.856 22.622 44.451 0.6 107.23 ? O1 PO4 506 A 1 HETATM 3 O O2 PO4 . . . F 4 74.396 21.811 46.269 0.6 106.96 ? O2 PO4 506 A 1 HETATM 4 O O3 PO4 . . . F 4 76.764 21.107 46.17 0.6 107.33 ? O3 PO4 506 A 1 HETATM 5 O O4 PO4 . . . F 4 76.205 23.437 46.746 0.6 107.12 ? O4 PO4 506 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #