data_3S7A # _model_server_result.job_id xcDYTD8wfTDjKrmZjaDtrg _model_server_result.datetime_utc '2024-11-25 20:55:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":192}' # _entry.id 3S7A # _exptl.entry_id 3S7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.495 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-({5-[(2,4-diaminopteridin-6-yl)methyl]-5H-dibenzo[b,f]azepin-2-yl}oxy)butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S7A _cell.length_a 54.588 _cell.length_b 55.106 _cell.length_c 64.827 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H23 N7 O3' _chem_comp.formula_weight 469.495 _chem_comp.id 684 _chem_comp.mon_nstd_flag . _chem_comp.name '4-({5-[(2,4-diaminopteridin-6-yl)methyl]-5H-dibenzo[b,f]azepin-2-yl}oxy)butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PT684 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 684 doub 1 n y N1 C8A 684 sing 2 n y N3 C2 684 sing 3 n y N2 C2 684 sing 4 n n N2 HN2 684 sing 5 n n N2 HN2A 684 sing 6 n n N3 C4 684 doub 7 n y N4 C4 684 sing 8 n n C4 C4A 684 sing 9 n y N4 HN4 684 sing 10 n n N4 HN4A 684 sing 11 n n C4A N5 684 doub 12 n y N5 C6 684 sing 13 n y C6 C9 684 sing 14 n n C6 C7 684 doub 15 n y N8 C7 684 sing 16 n y C7 H7 684 sing 17 n n C8A N8 684 doub 18 n y C9 N10 684 sing 19 n n C9 H9 684 sing 20 n n C9 H9A 684 sing 21 n n N10 CBG 684 sing 22 n n N10 CBF 684 sing 23 n n C4A C8A 684 sing 24 n y CAX OAC 684 doub 25 n n CAX OAD 684 sing 26 n n OAD HOAD 684 sing 27 n n CAF CAE 684 doub 28 n y CAE CAH 684 sing 29 n y CAE HAE 684 sing 30 n n CAI CAF 684 sing 31 n y CAF HAF 684 sing 32 n n CAJ CAG 684 doub 33 n y CAG CBA 684 sing 34 n y CAG HAG 684 sing 35 n n CBC CAH 684 doub 36 n y CAH HAH 684 sing 37 n n CAI CBF 684 doub 38 n y CAI HAI 684 sing 39 n n CAJ CBG 684 sing 40 n y CAJ HAJ 684 sing 41 n n CBC CAK 684 sing 42 n n CAL CAK 684 doub 43 n n CAK HAK 684 sing 44 n n CBD CAL 684 sing 45 n n CAL HAL 684 sing 46 n n CBA CAN 684 doub 47 n y CBD CAN 684 sing 48 n y CAN HAN 684 sing 49 n n CAP CAO 684 sing 50 n n CAO CAQ 684 sing 51 n n CAO HAO 684 sing 52 n n CAO HAOA 684 sing 53 n n OAW CAP 684 sing 54 n n CAP HAP 684 sing 55 n n CAP HAPA 684 sing 56 n n CAQ CAX 684 sing 57 n n CAQ HAQ 684 sing 58 n n CAQ HAQA 684 sing 59 n n CBA OAW 684 sing 60 n n CBF CBC 684 sing 61 n y CBG CBD 684 doub 62 n y # _atom_sites.entry_id 3S7A _atom_sites.fract_transf_matrix[1][1] 0.018319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 187 1 SO4 SO4 . C 2 SO4 A 1 188 2 SO4 SO4 . D 2 SO4 A 1 189 3 SO4 SO4 . E 2 SO4 A 1 190 4 SO4 SO4 . F 2 SO4 A 1 191 5 SO4 SO4 . G 3 684 A 1 192 1 684 684 . H 4 HOH A 1 193 1 HOH HOH . H 4 HOH A 2 194 2 HOH HOH . H 4 HOH A 3 195 3 HOH HOH . H 4 HOH A 4 196 4 HOH HOH . H 4 HOH A 5 197 5 HOH HOH . H 4 HOH A 6 198 6 HOH HOH . H 4 HOH A 7 199 7 HOH HOH . H 4 HOH A 8 200 8 HOH HOH . H 4 HOH A 9 201 9 HOH HOH . H 4 HOH A 10 202 10 HOH HOH . H 4 HOH A 11 203 11 HOH HOH . H 4 HOH A 12 204 12 HOH HOH . H 4 HOH A 13 205 13 HOH HOH . H 4 HOH A 14 206 15 HOH HOH . H 4 HOH A 15 207 16 HOH HOH . H 4 HOH A 16 208 17 HOH HOH . H 4 HOH A 17 209 18 HOH HOH . H 4 HOH A 18 210 19 HOH HOH . H 4 HOH A 19 211 20 HOH HOH . H 4 HOH A 20 212 21 HOH HOH . H 4 HOH A 21 213 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 684 . A . G 3 19.26 11.093 10.442 0.5 14.85 ? N1 684 192 A 1 HETATM 2 N N1 684 . B . G 3 19.254 11.096 10.446 0.5 15.12 ? N1 684 192 A 1 HETATM 3 C C2 684 . A . G 3 18.835 11.106 9.162 0.5 14.94 ? C2 684 192 A 1 HETATM 4 C C2 684 . B . G 3 18.84 11.111 9.163 0.5 15.23 ? C2 684 192 A 1 HETATM 5 N N2 684 . A . G 3 18.319 12.249 8.712 0.5 12.21 ? N2 684 192 A 1 HETATM 6 N N2 684 . B . G 3 18.334 12.258 8.71 0.5 12.56 ? N2 684 192 A 1 HETATM 7 N N3 684 . A . G 3 18.941 9.997 8.376 0.5 12.4 ? N3 684 192 A 1 HETATM 8 N N3 684 . B . G 3 18.943 10.002 8.378 0.5 12.73 ? N3 684 192 A 1 HETATM 9 C C4 684 . A . G 3 19.434 8.845 8.856 0.5 13.66 ? C4 684 192 A 1 HETATM 10 C C4 684 . B . G 3 19.426 8.847 8.862 0.5 13.94 ? C4 684 192 A 1 HETATM 11 N N4 684 . A . G 3 19.537 7.749 8.071 0.5 12.04 ? N4 684 192 A 1 HETATM 12 N N4 684 . B . G 3 19.528 7.751 8.077 0.5 12.33 ? N4 684 192 A 1 HETATM 13 N N5 684 . A . G 3 20.416 7.737 10.734 0.5 16.74 ? N5 684 192 A 1 HETATM 14 N N5 684 . B . G 3 20.385 7.732 10.748 0.5 16.98 ? N5 684 192 A 1 HETATM 15 C C6 684 . A . G 3 20.818 7.724 12.016 0.5 16.57 ? C6 684 192 A 1 HETATM 16 C C6 684 . B . G 3 20.777 7.717 12.033 0.5 16.82 ? C6 684 192 A 1 HETATM 17 C C7 684 . A . G 3 20.717 8.892 12.788 0.5 16.41 ? C7 684 192 A 1 HETATM 18 C C7 684 . B . G 3 20.676 8.885 12.803 0.5 16.62 ? C7 684 192 A 1 HETATM 19 N N8 684 . A . G 3 20.196 9.983 12.258 0.5 15.17 ? N8 684 192 A 1 HETATM 20 N N8 684 . B . G 3 20.169 9.98 12.269 0.5 15.41 ? N8 684 192 A 1 HETATM 21 C C9 684 . A . G 3 21.441 6.414 12.549 0.5 20.05 ? C9 684 192 A 1 HETATM 22 C C9 684 . B . G 3 21.384 6.403 12.575 0.5 20.38 ? C9 684 192 A 1 HETATM 23 N N10 684 . A . G 3 21.305 6.155 13.982 0.5 18.91 ? N10 684 192 A 1 HETATM 24 N N10 684 . B . G 3 21.261 6.156 14.013 0.5 19.71 ? N10 684 192 A 1 HETATM 25 C C4A 684 . A . G 3 19.862 8.828 10.208 0.5 14.06 ? C4A 684 192 A 1 HETATM 26 C C4A 684 . B . G 3 19.843 8.827 10.217 0.5 14.24 ? C4A 684 192 A 1 HETATM 27 C C8A 684 . A . G 3 19.775 9.97 10.973 0.5 14.6 ? C8A 684 192 A 1 HETATM 28 C C8A 684 . B . G 3 19.758 9.969 10.981 0.5 14.86 ? C8A 684 192 A 1 HETATM 29 O OAC 684 . A . G 3 13.855 8.06 19.661 0.5 29.42 ? OAC 684 192 A 1 HETATM 30 O OAC 684 . B . G 3 15.605 9.505 19.078 0.5 32.64 ? OAC 684 192 A 1 HETATM 31 O OAD 684 . A . G 3 15.287 9.721 20.048 0.5 32.37 ? OAD 684 192 A 1 HETATM 32 O OAD 684 . B . G 3 13.365 9.472 19.137 0.5 33.83 ? OAD 684 192 A 1 HETATM 33 C CAE 684 . A . G 3 24.633 4.902 16.102 0.5 24.68 ? CAE 684 192 A 1 HETATM 34 C CAE 684 . B . G 3 24.609 4.896 16.091 0.5 25.25 ? CAE 684 192 A 1 HETATM 35 C CAF 684 . A . G 3 24.375 4.449 14.808 0.5 22.95 ? CAF 684 192 A 1 HETATM 36 C CAF 684 . B . G 3 24.332 4.439 14.803 0.5 23.68 ? CAF 684 192 A 1 HETATM 37 C CAG 684 . A . G 3 17.815 5.498 13.979 0.5 21.62 ? CAG 684 192 A 1 HETATM 38 C CAG 684 . B . G 3 17.769 5.502 14.07 0.5 23.09 ? CAG 684 192 A 1 HETATM 39 C CAH 684 . A . G 3 23.775 5.803 16.727 0.5 22.77 ? CAH 684 192 A 1 HETATM 40 C CAH 684 . B . G 3 23.763 5.806 16.722 0.5 23.47 ? CAH 684 192 A 1 HETATM 41 C CAI 684 . A . G 3 23.235 4.89 14.116 0.5 23.17 ? CAI 684 192 A 1 HETATM 42 C CAI 684 . B . G 3 23.185 4.882 14.125 0.5 23.64 ? CAI 684 192 A 1 HETATM 43 C CAJ 684 . A . G 3 19.153 5.561 13.611 0.5 20.22 ? CAJ 684 192 A 1 HETATM 44 C CAJ 684 . B . G 3 19.102 5.562 13.685 0.5 21.24 ? CAJ 684 192 A 1 HETATM 45 C CAK 684 . A . G 3 21.874 7.109 16.781 0.5 19.03 ? CAK 684 192 A 1 HETATM 46 C CAK 684 . B . G 3 21.866 7.123 16.796 0.5 19.98 ? CAK 684 192 A 1 HETATM 47 C CAL 684 . A . G 3 20.496 7.27 16.642 0.5 19.9 ? CAL 684 192 A 1 HETATM 48 C CAL 684 . B . G 3 20.486 7.293 16.679 0.5 20.84 ? CAL 684 192 A 1 HETATM 49 C CAN 684 . A . G 3 18.334 6.583 16.069 0.5 21.27 ? CAN 684 192 A 1 HETATM 50 C CAN 684 . B . G 3 18.308 6.603 16.144 0.5 22.55 ? CAN 684 192 A 1 HETATM 51 C CAO 684 . A . G 3 15.388 7.432 17.426 0.5 26.31 ? CAO 684 192 A 1 HETATM 52 C CAO 684 . B . G 3 15.78 8.054 16.876 0.5 28.64 ? CAO 684 192 A 1 HETATM 53 C CAP 684 . A . G 3 15.861 6.041 17.008 0.5 26.2 ? CAP 684 192 A 1 HETATM 54 C CAP 684 . B . G 3 15.625 6.539 16.919 0.5 27.12 ? CAP 684 192 A 1 HETATM 55 C CAQ 684 . A . G 3 16.02 7.851 18.76 0.5 26.51 ? CAQ 684 192 A 1 HETATM 56 C CAQ 684 . B . G 3 14.473 8.792 17.16 0.5 26.39 ? CAQ 684 192 A 1 HETATM 57 O OAW 684 . A . G 3 16.076 5.933 15.561 0.5 24.48 ? OAW 684 192 A 1 HETATM 58 O OAW 684 . B . G 3 16.026 5.93 15.641 0.5 26.1 ? OAW 684 192 A 1 HETATM 59 C CAX 684 . A . G 3 14.977 8.596 19.589 0.5 29.7 ? CAX 684 192 A 1 HETATM 60 C CAX 684 . B . G 3 14.475 9.318 18.571 0.5 31.73 ? CAX 684 192 A 1 HETATM 61 C CBA 684 . A . G 3 17.4 6.019 15.208 0.5 20.37 ? CBA 684 192 A 1 HETATM 62 C CBA 684 . B . G 3 17.36 6.03 15.297 0.5 21.9 ? CBA 684 192 A 1 HETATM 63 C CBC 684 . A . G 3 22.657 6.239 16.024 0.5 20.33 ? CBC 684 192 A 1 HETATM 64 C CBC 684 . B . G 3 22.637 6.244 16.034 0.5 21.14 ? CBC 684 192 A 1 HETATM 65 C CBD 684 . A . G 3 19.683 6.639 15.696 0.5 19.7 ? CBD 684 192 A 1 HETATM 66 C CBD 684 . B . G 3 19.655 6.658 15.751 0.5 21.07 ? CBD 684 192 A 1 HETATM 67 C CBF 684 . A . G 3 22.384 5.794 14.733 0.5 21.45 ? CBF 684 192 A 1 HETATM 68 C CBF 684 . B . G 3 22.347 5.794 14.749 0.5 22.23 ? CBF 684 192 A 1 HETATM 69 C CBG 684 . A . G 3 20.075 6.149 14.48 0.5 19.04 ? CBG 684 192 A 1 HETATM 70 C CBG 684 . B . G 3 20.036 6.156 14.533 0.5 19.79 ? CBG 684 192 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 70 #