data_3S7B # _model_server_result.job_id CZVHBnI8ZRQQraHhoDQPfw _model_server_result.datetime_utc '2025-03-14 00:58:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 3S7B # _exptl.entry_id 3S7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S7B _cell.length_a 155.86 _cell.length_b 155.86 _cell.length_c 52.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 I ZN ZN . A ZN 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 I ZN ZN . A ZN 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc3 A SG CYS 65 A CYS 65 1_555 J ZN ZN . A ZN 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc4 A SG CYS 68 A CYS 68 1_555 J ZN ZN . A ZN 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 I ZN ZN . A ZN 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 A SG CYS 78 A CYS 78 1_555 I ZN ZN . A ZN 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 A NE2 HIS 86 A HIS 86 1_555 J ZN ZN . A ZN 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc8 A SG CYS 90 A CYS 90 1_555 J ZN ZN . A ZN 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 A SG CYS 209 A CYS 209 1_555 K ZN ZN . A ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc10 A SG CYS 262 A CYS 262 1_555 K ZN ZN . A ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc11 A SG CYS 264 A CYS 264 1_555 K ZN ZN . A ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc12 A SG CYS 267 A CYS 267 1_555 K ZN ZN . A ZN 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 372 n n N HN1 SAM sing 373 n n N HN2 SAM sing 374 n n CA C SAM sing 375 n n CA CB SAM sing 376 n n CA HA SAM sing 377 n n C O SAM doub 378 n n C OXT SAM sing 379 n n CB CG SAM sing 380 n n CB HB1 SAM sing 381 n n CB HB2 SAM sing 382 n n CG SD SAM sing 383 n n CG HG1 SAM sing 384 n n CG HG2 SAM sing 385 n n SD CE SAM sing 386 n n SD C5' SAM sing 387 n n CE HE1 SAM sing 388 n n CE HE2 SAM sing 389 n n CE HE3 SAM sing 390 n n C5' C4' SAM sing 391 n n C5' "H5'1" SAM sing 392 n n C5' "H5'2" SAM sing 393 n n C4' O4' SAM sing 394 n n C4' C3' SAM sing 395 n n C4' H4' SAM sing 396 n n O4' C1' SAM sing 397 n n C3' O3' SAM sing 398 n n C3' C2' SAM sing 399 n n C3' H3' SAM sing 400 n n O3' HO3' SAM sing 401 n n C2' O2' SAM sing 402 n n C2' C1' SAM sing 403 n n C2' H2' SAM sing 404 n n O2' HO2' SAM sing 405 n n C1' N9 SAM sing 406 n n C1' H1' SAM sing 407 n n N9 C8 SAM sing 408 n y N9 C4 SAM sing 409 n y C8 N7 SAM doub 410 n y C8 H8 SAM sing 411 n n N7 C5 SAM sing 412 n y C5 C6 SAM sing 413 n y C5 C4 SAM doub 414 n y C6 N6 SAM sing 415 n n C6 N1 SAM doub 416 n y N6 HN61 SAM sing 417 n n N6 HN62 SAM sing 418 n n N1 C2 SAM sing 419 n y C2 N3 SAM doub 420 n y C2 H2 SAM sing 421 n n N3 C4 SAM sing 422 n y # _atom_sites.entry_id 3S7B _atom_sites.fract_transf_matrix[1][1] 0.006416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 1000 1000 SAM SAM . C 3 BU3 A 1 434 1 BU3 BU3 . D 3 BU3 A 1 435 2 BU3 BU3 . E 3 BU3 A 1 436 3 BU3 BU3 . F 3 BU3 A 1 437 4 BU3 BU3 . G 3 BU3 A 1 438 5 BU3 BU3 . H 4 NH5 A 1 439 1 NH5 NH5 . I 5 ZN A 1 440 1 ZN ZN . J 5 ZN A 1 441 2 ZN ZN . K 5 ZN A 1 442 3 ZN ZN . L 6 HOH A 1 443 1 HOH HOH . L 6 HOH A 2 444 2 HOH HOH . L 6 HOH A 3 445 3 HOH HOH . L 6 HOH A 4 446 4 HOH HOH . L 6 HOH A 5 447 5 HOH HOH . L 6 HOH A 6 448 6 HOH HOH . L 6 HOH A 7 449 7 HOH HOH . L 6 HOH A 8 450 8 HOH HOH . L 6 HOH A 9 451 9 HOH HOH . L 6 HOH A 10 452 10 HOH HOH . L 6 HOH A 11 453 11 HOH HOH . L 6 HOH A 12 454 12 HOH HOH . L 6 HOH A 13 455 13 HOH HOH . L 6 HOH A 14 456 14 HOH HOH . L 6 HOH A 15 457 15 HOH HOH . L 6 HOH A 16 458 16 HOH HOH . L 6 HOH A 17 459 17 HOH HOH . L 6 HOH A 18 460 18 HOH HOH . L 6 HOH A 19 461 19 HOH HOH . L 6 HOH A 20 462 20 HOH HOH . L 6 HOH A 21 463 21 HOH HOH . L 6 HOH A 22 464 22 HOH HOH . L 6 HOH A 23 465 23 HOH HOH . L 6 HOH A 24 466 24 HOH HOH . L 6 HOH A 25 467 25 HOH HOH . L 6 HOH A 26 468 26 HOH HOH . L 6 HOH A 27 469 27 HOH HOH . L 6 HOH A 28 470 28 HOH HOH . L 6 HOH A 29 471 29 HOH HOH . L 6 HOH A 30 472 30 HOH HOH . L 6 HOH A 31 473 31 HOH HOH . L 6 HOH A 32 474 32 HOH HOH . L 6 HOH A 33 475 33 HOH HOH . L 6 HOH A 34 476 34 HOH HOH . L 6 HOH A 35 477 35 HOH HOH . L 6 HOH A 36 478 36 HOH HOH . L 6 HOH A 37 479 37 HOH HOH . L 6 HOH A 38 480 39 HOH HOH . L 6 HOH A 39 481 40 HOH HOH . L 6 HOH A 40 482 41 HOH HOH . L 6 HOH A 41 483 42 HOH HOH . L 6 HOH A 42 484 43 HOH HOH . L 6 HOH A 43 485 44 HOH HOH . L 6 HOH A 44 486 45 HOH HOH . L 6 HOH A 45 487 46 HOH HOH . L 6 HOH A 46 488 47 HOH HOH . L 6 HOH A 47 489 48 HOH HOH . L 6 HOH A 48 490 49 HOH HOH . L 6 HOH A 49 491 50 HOH HOH . L 6 HOH A 50 492 51 HOH HOH . L 6 HOH A 51 493 52 HOH HOH . L 6 HOH A 52 494 53 HOH HOH . L 6 HOH A 53 495 54 HOH HOH . L 6 HOH A 54 496 55 HOH HOH . L 6 HOH A 55 497 56 HOH HOH . L 6 HOH A 56 498 57 HOH HOH . L 6 HOH A 57 499 58 HOH HOH . L 6 HOH A 58 500 59 HOH HOH . L 6 HOH A 59 501 60 HOH HOH . L 6 HOH A 60 502 61 HOH HOH . L 6 HOH A 61 503 62 HOH HOH . L 6 HOH A 62 504 63 HOH HOH . L 6 HOH A 63 505 64 HOH HOH . L 6 HOH A 64 506 65 HOH HOH . L 6 HOH A 65 507 66 HOH HOH . L 6 HOH A 66 508 67 HOH HOH . L 6 HOH A 67 509 68 HOH HOH . L 6 HOH A 68 510 69 HOH HOH . L 6 HOH A 69 511 70 HOH HOH . L 6 HOH A 70 512 71 HOH HOH . L 6 HOH A 71 513 72 HOH HOH . L 6 HOH A 72 514 73 HOH HOH . L 6 HOH A 73 515 74 HOH HOH . L 6 HOH A 74 516 75 HOH HOH . L 6 HOH A 75 517 76 HOH HOH . L 6 HOH A 76 518 77 HOH HOH . L 6 HOH A 77 519 78 HOH HOH . L 6 HOH A 78 520 79 HOH HOH . L 6 HOH A 79 521 80 HOH HOH . L 6 HOH A 80 522 81 HOH HOH . L 6 HOH A 81 523 82 HOH HOH . L 6 HOH A 82 524 83 HOH HOH . L 6 HOH A 83 525 84 HOH HOH . L 6 HOH A 84 526 85 HOH HOH . L 6 HOH A 85 527 86 HOH HOH . L 6 HOH A 86 528 87 HOH HOH . L 6 HOH A 87 529 88 HOH HOH . L 6 HOH A 88 530 89 HOH HOH . L 6 HOH A 89 531 90 HOH HOH . L 6 HOH A 90 532 91 HOH HOH . L 6 HOH A 91 533 92 HOH HOH . L 6 HOH A 92 534 93 HOH HOH . L 6 HOH A 93 535 94 HOH HOH . L 6 HOH A 94 536 95 HOH HOH . L 6 HOH A 95 537 96 HOH HOH . L 6 HOH A 96 538 97 HOH HOH . L 6 HOH A 97 539 98 HOH HOH . L 6 HOH A 98 540 99 HOH HOH . L 6 HOH A 99 541 100 HOH HOH . L 6 HOH A 100 542 101 HOH HOH . L 6 HOH A 101 543 102 HOH HOH . L 6 HOH A 102 544 103 HOH HOH . L 6 HOH A 103 545 104 HOH HOH . L 6 HOH A 104 546 105 HOH HOH . L 6 HOH A 105 547 106 HOH HOH . L 6 HOH A 106 548 107 HOH HOH . L 6 HOH A 107 549 108 HOH HOH . L 6 HOH A 108 550 109 HOH HOH . L 6 HOH A 109 551 110 HOH HOH . L 6 HOH A 110 552 111 HOH HOH . L 6 HOH A 111 553 112 HOH HOH . L 6 HOH A 112 554 113 HOH HOH . L 6 HOH A 113 555 114 HOH HOH . L 6 HOH A 114 556 115 HOH HOH . L 6 HOH A 115 557 116 HOH HOH . L 6 HOH A 116 558 117 HOH HOH . L 6 HOH A 117 559 118 HOH HOH . L 6 HOH A 118 560 119 HOH HOH . L 6 HOH A 119 561 120 HOH HOH . L 6 HOH A 120 562 121 HOH HOH . L 6 HOH A 121 563 122 HOH HOH . L 6 HOH A 122 564 123 HOH HOH . L 6 HOH A 123 565 124 HOH HOH . L 6 HOH A 124 566 125 HOH HOH . L 6 HOH A 125 567 126 HOH HOH . L 6 HOH A 126 568 127 HOH HOH . L 6 HOH A 127 569 128 HOH HOH . L 6 HOH A 128 570 129 HOH HOH . L 6 HOH A 129 571 130 HOH HOH . L 6 HOH A 130 572 131 HOH HOH . L 6 HOH A 131 573 132 HOH HOH . L 6 HOH A 132 574 133 HOH HOH . L 6 HOH A 133 575 134 HOH HOH . L 6 HOH A 134 576 135 HOH HOH . L 6 HOH A 135 577 136 HOH HOH . L 6 HOH A 136 578 137 HOH HOH . L 6 HOH A 137 579 138 HOH HOH . L 6 HOH A 138 580 139 HOH HOH . L 6 HOH A 139 581 140 HOH HOH . L 6 HOH A 140 582 141 HOH HOH . L 6 HOH A 141 583 142 HOH HOH . L 6 HOH A 142 584 143 HOH HOH . L 6 HOH A 143 585 144 HOH HOH . L 6 HOH A 144 586 145 HOH HOH . L 6 HOH A 145 587 146 HOH HOH . L 6 HOH A 146 588 147 HOH HOH . L 6 HOH A 147 589 148 HOH HOH . L 6 HOH A 148 590 149 HOH HOH . L 6 HOH A 149 591 150 HOH HOH . L 6 HOH A 150 592 151 HOH HOH . L 6 HOH A 151 593 152 HOH HOH . L 6 HOH A 152 594 153 HOH HOH . L 6 HOH A 153 595 154 HOH HOH . L 6 HOH A 154 596 155 HOH HOH . L 6 HOH A 155 597 156 HOH HOH . L 6 HOH A 156 598 157 HOH HOH . L 6 HOH A 157 599 158 HOH HOH . L 6 HOH A 158 600 159 HOH HOH . L 6 HOH A 159 601 160 HOH HOH . L 6 HOH A 160 602 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 -17.179 -60.223 15.679 1 40.12 ? N SAM 1000 A 1 HETATM 2 C CA SAM . . . B 2 -16.029 -59.988 14.743 1 42.13 ? CA SAM 1000 A 1 HETATM 3 C C SAM . . . B 2 -14.681 -60.339 15.356 1 45.92 ? C SAM 1000 A 1 HETATM 4 O O SAM . . . B 2 -13.646 -60.123 14.728 1 44.54 ? O SAM 1000 A 1 HETATM 5 O OXT SAM . . . B 2 -14.625 -60.846 16.483 1 46.99 ? OXT SAM 1000 A 1 HETATM 6 C CB SAM . . . B 2 -16.016 -58.531 14.207 1 40.11 ? CB SAM 1000 A 1 HETATM 7 C CG SAM . . . B 2 -16.933 -58.333 12.962 1 38.68 ? CG SAM 1000 A 1 HETATM 8 S SD SAM . . . B 2 -16.194 -59.208 11.524 1 38.75 ? SD SAM 1000 A 1 HETATM 9 C CE SAM . . . B 2 -16.106 -58.026 10.224 1 39.58 ? CE SAM 1000 A 1 HETATM 10 C C5' SAM . . . B 2 -17.489 -60.209 10.816 1 37.21 ? C5' SAM 1000 A 1 HETATM 11 C C4' SAM . . . B 2 -17.718 -61.502 11.667 1 37.37 ? C4' SAM 1000 A 1 HETATM 12 O O4' SAM . . . B 2 -18.32 -61.22 12.95 1 37 ? O4' SAM 1000 A 1 HETATM 13 C C3' SAM . . . B 2 -18.759 -62.367 10.965 1 38.18 ? C3' SAM 1000 A 1 HETATM 14 O O3' SAM . . . B 2 -18.25 -63.114 9.877 1 40.65 ? O3' SAM 1000 A 1 HETATM 15 C C2' SAM . . . B 2 -19.355 -63.198 12.109 1 38.83 ? C2' SAM 1000 A 1 HETATM 16 O O2' SAM . . . B 2 -18.474 -64.251 12.533 1 39.78 ? O2' SAM 1000 A 1 HETATM 17 C C1' SAM . . . B 2 -19.408 -62.135 13.223 1 36.9 ? C1' SAM 1000 A 1 HETATM 18 N N9 SAM . . . B 2 -20.672 -61.407 13.31 1 32.58 ? N9 SAM 1000 A 1 HETATM 19 C C8 SAM . . . B 2 -20.932 -60.09 12.874 1 30.92 ? C8 SAM 1000 A 1 HETATM 20 N N7 SAM . . . B 2 -22.162 -59.817 13.154 1 31.02 ? N7 SAM 1000 A 1 HETATM 21 C C5 SAM . . . B 2 -22.771 -60.899 13.751 1 32.2 ? C5 SAM 1000 A 1 HETATM 22 C C6 SAM . . . B 2 -24.069 -61.184 14.271 1 32.55 ? C6 SAM 1000 A 1 HETATM 23 N N6 SAM . . . B 2 -25.071 -60.256 14.231 1 31.84 ? N6 SAM 1000 A 1 HETATM 24 N N1 SAM . . . B 2 -24.309 -62.461 14.797 1 34.06 ? N1 SAM 1000 A 1 HETATM 25 C C2 SAM . . . B 2 -23.341 -63.42 14.835 1 34.6 ? C2 SAM 1000 A 1 HETATM 26 N N3 SAM . . . B 2 -22.113 -63.166 14.389 1 33.99 ? N3 SAM 1000 A 1 HETATM 27 C C4 SAM . . . B 2 -21.792 -61.936 13.864 1 33.24 ? C4 SAM 1000 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #