data_3S7D # _model_server_result.job_id AgIsaFBImflC9a-dq6jTbQ _model_server_result.datetime_utc '2024-11-29 03:12:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":434}' # _entry.id 3S7D # _exptl.entry_id 3S7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R,R)-2,3-BUTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S7D _cell.length_a 153.835 _cell.length_b 153.835 _cell.length_c 52.727 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LEU 4 I LEU 369 1_555 B N MLZ 5 I MLZ 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale2 B C MLZ 5 I MLZ 370 1_555 B N SER 6 I SER 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 H ZN ZN . A ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A SG CYS 267 A CYS 267 1_555 I ZN ZN . A ZN 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 A SG CYS 68 A CYS 68 1_555 H ZN ZN . A ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 A SG CYS 78 A CYS 78 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 A SG CYS 90 A CYS 90 1_555 H ZN ZN . A ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc6 A SG CYS 262 A CYS 262 1_555 I ZN ZN . A ZN 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc7 A SG CYS 52 A CYS 52 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc8 A SG CYS 65 A CYS 65 1_555 H ZN ZN . A ZN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc9 A SG CYS 55 A CYS 55 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc10 A SG CYS 74 A CYS 74 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc11 A SG CYS 264 A CYS 264 1_555 I ZN ZN . A ZN 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc12 A SG CYS 209 A CYS 209 1_555 I ZN ZN . A ZN 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU3 _chem_comp.mon_nstd_flag . _chem_comp.name (R,R)-2,3-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3S7D _atom_sites.fract_transf_matrix[1][1] 0.0065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 1000 1000 SAH SAH . D 4 BU3 A 1 434 1 BU3 BU3 . E 4 BU3 A 1 435 2 BU3 BU3 . F 4 BU3 A 1 436 4 BU3 BU3 . G 5 ZN A 1 437 1 ZN ZN . H 5 ZN A 1 438 2 ZN ZN . I 5 ZN A 1 439 3 ZN ZN . J 6 HOH A 1 440 1 HOH HOH . J 6 HOH A 2 441 2 HOH HOH . J 6 HOH A 3 442 3 HOH HOH . J 6 HOH A 4 443 4 HOH HOH . J 6 HOH A 5 444 5 HOH HOH . J 6 HOH A 6 445 6 HOH HOH . J 6 HOH A 7 446 7 HOH HOH . J 6 HOH A 8 447 8 HOH HOH . J 6 HOH A 9 448 9 HOH HOH . J 6 HOH A 10 449 10 HOH HOH . J 6 HOH A 11 450 11 HOH HOH . J 6 HOH A 12 451 12 HOH HOH . J 6 HOH A 13 452 13 HOH HOH . J 6 HOH A 14 453 14 HOH HOH . J 6 HOH A 15 454 15 HOH HOH . J 6 HOH A 16 455 16 HOH HOH . J 6 HOH A 17 456 17 HOH HOH . J 6 HOH A 18 457 18 HOH HOH . J 6 HOH A 19 458 19 HOH HOH . J 6 HOH A 20 459 20 HOH HOH . J 6 HOH A 21 460 21 HOH HOH . J 6 HOH A 22 461 22 HOH HOH . J 6 HOH A 23 462 23 HOH HOH . J 6 HOH A 24 463 24 HOH HOH . J 6 HOH A 25 464 25 HOH HOH . J 6 HOH A 26 465 26 HOH HOH . J 6 HOH A 27 466 27 HOH HOH . J 6 HOH A 28 467 28 HOH HOH . J 6 HOH A 29 468 29 HOH HOH . J 6 HOH A 30 469 30 HOH HOH . J 6 HOH A 31 470 31 HOH HOH . J 6 HOH A 32 471 32 HOH HOH . J 6 HOH A 33 472 33 HOH HOH . J 6 HOH A 34 473 34 HOH HOH . J 6 HOH A 35 474 35 HOH HOH . J 6 HOH A 36 475 36 HOH HOH . J 6 HOH A 37 476 37 HOH HOH . J 6 HOH A 38 477 38 HOH HOH . J 6 HOH A 39 478 39 HOH HOH . J 6 HOH A 40 479 40 HOH HOH . J 6 HOH A 41 480 41 HOH HOH . J 6 HOH A 42 481 42 HOH HOH . J 6 HOH A 43 482 43 HOH HOH . J 6 HOH A 44 483 44 HOH HOH . J 6 HOH A 45 484 45 HOH HOH . J 6 HOH A 46 485 46 HOH HOH . J 6 HOH A 47 486 47 HOH HOH . J 6 HOH A 48 487 48 HOH HOH . J 6 HOH A 49 488 49 HOH HOH . J 6 HOH A 50 489 50 HOH HOH . J 6 HOH A 51 490 51 HOH HOH . J 6 HOH A 52 491 52 HOH HOH . J 6 HOH A 53 492 53 HOH HOH . J 6 HOH A 54 493 54 HOH HOH . J 6 HOH A 55 494 55 HOH HOH . J 6 HOH A 56 495 56 HOH HOH . J 6 HOH A 57 496 57 HOH HOH . J 6 HOH A 58 497 58 HOH HOH . J 6 HOH A 59 498 59 HOH HOH . J 6 HOH A 60 499 60 HOH HOH . J 6 HOH A 61 500 61 HOH HOH . J 6 HOH A 62 501 62 HOH HOH . J 6 HOH A 63 502 63 HOH HOH . J 6 HOH A 64 503 64 HOH HOH . J 6 HOH A 65 504 65 HOH HOH . J 6 HOH A 66 505 66 HOH HOH . J 6 HOH A 67 506 67 HOH HOH . J 6 HOH A 68 507 68 HOH HOH . J 6 HOH A 69 508 69 HOH HOH . J 6 HOH A 70 509 70 HOH HOH . J 6 HOH A 71 510 71 HOH HOH . J 6 HOH A 72 511 72 HOH HOH . J 6 HOH A 73 512 73 HOH HOH . J 6 HOH A 74 513 74 HOH HOH . J 6 HOH A 75 514 75 HOH HOH . J 6 HOH A 76 515 76 HOH HOH . J 6 HOH A 77 516 77 HOH HOH . J 6 HOH A 78 517 78 HOH HOH . J 6 HOH A 79 518 80 HOH HOH . J 6 HOH A 80 519 81 HOH HOH . J 6 HOH A 81 520 82 HOH HOH . J 6 HOH A 82 521 83 HOH HOH . J 6 HOH A 83 522 84 HOH HOH . J 6 HOH A 84 523 85 HOH HOH . J 6 HOH A 85 524 86 HOH HOH . J 6 HOH A 86 525 87 HOH HOH . J 6 HOH A 87 526 88 HOH HOH . J 6 HOH A 88 527 89 HOH HOH . J 6 HOH A 89 528 90 HOH HOH . J 6 HOH A 90 529 91 HOH HOH . J 6 HOH A 91 530 92 HOH HOH . J 6 HOH A 92 531 93 HOH HOH . J 6 HOH A 93 532 94 HOH HOH . J 6 HOH A 94 533 95 HOH HOH . J 6 HOH A 95 534 96 HOH HOH . J 6 HOH A 96 535 97 HOH HOH . J 6 HOH A 97 536 98 HOH HOH . J 6 HOH A 98 537 99 HOH HOH . J 6 HOH A 99 538 100 HOH HOH . J 6 HOH A 100 539 101 HOH HOH . J 6 HOH A 101 540 102 HOH HOH . J 6 HOH A 102 541 103 HOH HOH . J 6 HOH A 103 542 104 HOH HOH . J 6 HOH A 104 543 105 HOH HOH . J 6 HOH A 105 544 106 HOH HOH . J 6 HOH A 106 545 108 HOH HOH . J 6 HOH A 107 546 109 HOH HOH . J 6 HOH A 108 547 111 HOH HOH . J 6 HOH A 109 548 112 HOH HOH . J 6 HOH A 110 549 113 HOH HOH . J 6 HOH A 111 550 114 HOH HOH . J 6 HOH A 112 551 115 HOH HOH . J 6 HOH A 113 552 116 HOH HOH . J 6 HOH A 114 553 117 HOH HOH . J 6 HOH A 115 554 118 HOH HOH . J 6 HOH A 116 555 119 HOH HOH . J 6 HOH A 117 556 120 HOH HOH . K 6 HOH I 1 79 79 HOH HOH . K 6 HOH I 2 107 107 HOH HOH . K 6 HOH I 3 110 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 BU3 . . . D 4 -24.937 -31.561 -44.356 1 75.79 ? O6 BU3 434 A 1 HETATM 2 C C3 BU3 . . . D 4 -23.88 -31.155 -43.432 1 73.53 ? C3 BU3 434 A 1 HETATM 3 C C4 BU3 . . . D 4 -23.261 -29.721 -43.579 1 73.65 ? C4 BU3 434 A 1 HETATM 4 C C2 BU3 . . . D 4 -22.875 -32.322 -43.354 1 70.87 ? C2 BU3 434 A 1 HETATM 5 O O5 BU3 . . . D 4 -23.609 -33.245 -42.61 1 68.01 ? O5 BU3 434 A 1 HETATM 6 C C1 BU3 . . . D 4 -21.49 -32.063 -42.691 1 70.41 ? C1 BU3 434 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #