data_3S7F # _model_server_result.job_id lbEAFETjaeUhsZeeXVW5Cw _model_server_result.datetime_utc '2024-12-07 02:23:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 3S7F # _exptl.entry_id 3S7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S7F _cell.length_a 156.413 _cell.length_b 156.413 _cell.length_c 52.895 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 E ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 E ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 A SG CYS 65 A CYS 65 1_555 F ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A SG CYS 68 A CYS 68 1_555 F ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 E ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 A SG CYS 78 A CYS 78 1_555 E ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc7 A NE2 HIS 86 A HIS 86 1_555 F ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc8 A SG CYS 90 A CYS 90 1_555 F ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 A SG CYS 209 A CYS 209 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc10 A SG CYS 262 A CYS 262 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc11 A SG CYS 264 A CYS 264 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc12 A SG CYS 267 A CYS 267 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 292 n n N HN1 SAM sing 293 n n N HN2 SAM sing 294 n n CA C SAM sing 295 n n CA CB SAM sing 296 n n CA HA SAM sing 297 n n C O SAM doub 298 n n C OXT SAM sing 299 n n CB CG SAM sing 300 n n CB HB1 SAM sing 301 n n CB HB2 SAM sing 302 n n CG SD SAM sing 303 n n CG HG1 SAM sing 304 n n CG HG2 SAM sing 305 n n SD CE SAM sing 306 n n SD C5' SAM sing 307 n n CE HE1 SAM sing 308 n n CE HE2 SAM sing 309 n n CE HE3 SAM sing 310 n n C5' C4' SAM sing 311 n n C5' "H5'1" SAM sing 312 n n C5' "H5'2" SAM sing 313 n n C4' O4' SAM sing 314 n n C4' C3' SAM sing 315 n n C4' H4' SAM sing 316 n n O4' C1' SAM sing 317 n n C3' O3' SAM sing 318 n n C3' C2' SAM sing 319 n n C3' H3' SAM sing 320 n n O3' HO3' SAM sing 321 n n C2' O2' SAM sing 322 n n C2' C1' SAM sing 323 n n C2' H2' SAM sing 324 n n O2' HO2' SAM sing 325 n n C1' N9 SAM sing 326 n n C1' H1' SAM sing 327 n n N9 C8 SAM sing 328 n y N9 C4 SAM sing 329 n y C8 N7 SAM doub 330 n y C8 H8 SAM sing 331 n n N7 C5 SAM sing 332 n y C5 C6 SAM sing 333 n y C5 C4 SAM doub 334 n y C6 N6 SAM sing 335 n n C6 N1 SAM doub 336 n y N6 HN61 SAM sing 337 n n N6 HN62 SAM sing 338 n n N1 C2 SAM sing 339 n y C2 N3 SAM doub 340 n y C2 H2 SAM sing 341 n n N3 C4 SAM sing 342 n y # _atom_sites.entry_id 3S7F _atom_sites.fract_transf_matrix[1][1] 0.006393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM A 1 1000 1000 SAM SAM . D 4 BU3 A 1 434 2 BU3 BU3 . E 5 ZN A 1 435 1 ZN ZN . F 5 ZN A 1 436 2 ZN ZN . G 5 ZN A 1 437 3 ZN ZN . H 6 HOH A 1 438 1 HOH HOH . H 6 HOH A 2 439 2 HOH HOH . H 6 HOH A 3 440 3 HOH HOH . H 6 HOH A 4 441 4 HOH HOH . H 6 HOH A 5 442 5 HOH HOH . H 6 HOH A 6 443 6 HOH HOH . H 6 HOH A 7 444 7 HOH HOH . H 6 HOH A 8 445 8 HOH HOH . H 6 HOH A 9 446 9 HOH HOH . H 6 HOH A 10 447 10 HOH HOH . H 6 HOH A 11 448 12 HOH HOH . H 6 HOH A 12 449 13 HOH HOH . I 6 HOH I 1 11 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 17.019 60.42 16.632 1 48.31 ? N SAM 1000 A 1 HETATM 2 C CA SAM . . . C 3 15.91 60.14 15.727 1 50.87 ? CA SAM 1000 A 1 HETATM 3 C C SAM . . . C 3 14.566 60.522 16.334 1 56.11 ? C SAM 1000 A 1 HETATM 4 O O SAM . . . C 3 13.514 60.317 15.639 1 55.41 ? O SAM 1000 A 1 HETATM 5 O OXT SAM . . . C 3 14.493 61.029 17.481 1 56.76 ? OXT SAM 1000 A 1 HETATM 6 C CB SAM . . . C 3 15.887 58.711 15.159 1 48.86 ? CB SAM 1000 A 1 HETATM 7 C CG SAM . . . C 3 16.792 58.536 13.946 1 48.18 ? CG SAM 1000 A 1 HETATM 8 S SD SAM . . . C 3 16.058 59.53 12.582 1 49.65 ? SD SAM 1000 A 1 HETATM 9 C CE SAM . . . C 3 15.895 58.364 11.144 1 51.49 ? CE SAM 1000 A 1 HETATM 10 C C5' SAM . . . C 3 17.367 60.41 11.81 1 48.19 ? C5' SAM 1000 A 1 HETATM 11 C C4' SAM . . . C 3 17.567 61.664 12.616 1 48.35 ? C4' SAM 1000 A 1 HETATM 12 O O4' SAM . . . C 3 18.223 61.351 13.852 1 48.85 ? O4' SAM 1000 A 1 HETATM 13 C C3' SAM . . . C 3 18.599 62.549 11.92 1 49.16 ? C3' SAM 1000 A 1 HETATM 14 O O3' SAM . . . C 3 18.097 63.251 10.782 1 51.11 ? O3' SAM 1000 A 1 HETATM 15 C C2' SAM . . . C 3 19.2 63.348 13.058 1 49.54 ? C2' SAM 1000 A 1 HETATM 16 O O2' SAM . . . C 3 18.323 64.329 13.53 1 49.37 ? O2' SAM 1000 A 1 HETATM 17 C C1' SAM . . . C 3 19.261 62.275 14.14 1 49.02 ? C1' SAM 1000 A 1 HETATM 18 N N9 SAM . . . C 3 20.516 61.505 14.211 1 48.29 ? N9 SAM 1000 A 1 HETATM 19 C C8 SAM . . . C 3 20.788 60.205 13.81 1 46.94 ? C8 SAM 1000 A 1 HETATM 20 N N7 SAM . . . C 3 22.003 59.898 14.092 1 47.4 ? N7 SAM 1000 A 1 HETATM 21 C C5 SAM . . . C 3 22.622 60.973 14.677 1 48.84 ? C5 SAM 1000 A 1 HETATM 22 C C6 SAM . . . C 3 23.918 61.24 15.199 1 50.37 ? C6 SAM 1000 A 1 HETATM 23 N N6 SAM . . . C 3 24.919 60.308 15.172 1 50.17 ? N6 SAM 1000 A 1 HETATM 24 N N1 SAM . . . C 3 24.17 62.46 15.706 1 51.74 ? N1 SAM 1000 A 1 HETATM 25 C C2 SAM . . . C 3 23.199 63.441 15.75 1 52.01 ? C2 SAM 1000 A 1 HETATM 26 N N3 SAM . . . C 3 21.959 63.283 15.287 1 50.7 ? N3 SAM 1000 A 1 HETATM 27 C C4 SAM . . . C 3 21.657 62.044 14.763 1 49.71 ? C4 SAM 1000 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 27 #