data_3S7F # _model_server_result.job_id RfOu8exxGZ5xABms-LsP5Q _model_server_result.datetime_utc '2024-12-13 21:51:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":434}' # _entry.id 3S7F # _exptl.entry_id 3S7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R,R)-2,3-BUTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S7F _cell.length_a 156.413 _cell.length_b 156.413 _cell.length_c 52.895 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 E ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 E ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 A SG CYS 65 A CYS 65 1_555 F ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A SG CYS 68 A CYS 68 1_555 F ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 E ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 A SG CYS 78 A CYS 78 1_555 E ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc7 A NE2 HIS 86 A HIS 86 1_555 F ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc8 A SG CYS 90 A CYS 90 1_555 F ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 A SG CYS 209 A CYS 209 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc10 A SG CYS 262 A CYS 262 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc11 A SG CYS 264 A CYS 264 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc12 A SG CYS 267 A CYS 267 1_555 G ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU3 _chem_comp.mon_nstd_flag . _chem_comp.name (R,R)-2,3-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C3 BU3 sing 70 n n O6 HO6 BU3 sing 71 n n C3 C4 BU3 sing 72 n n C3 C2 BU3 sing 73 n n C3 H3 BU3 sing 74 n n C4 H41 BU3 sing 75 n n C4 H42 BU3 sing 76 n n C4 H43 BU3 sing 77 n n C2 O5 BU3 sing 78 n n C2 C1 BU3 sing 79 n n C2 H2 BU3 sing 80 n n O5 HO5 BU3 sing 81 n n C1 H11 BU3 sing 82 n n C1 H12 BU3 sing 83 n n C1 H13 BU3 sing 84 n n # _atom_sites.entry_id 3S7F _atom_sites.fract_transf_matrix[1][1] 0.006393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM A 1 1000 1000 SAM SAM . D 4 BU3 A 1 434 2 BU3 BU3 . E 5 ZN A 1 435 1 ZN ZN . F 5 ZN A 1 436 2 ZN ZN . G 5 ZN A 1 437 3 ZN ZN . H 6 HOH A 1 438 1 HOH HOH . H 6 HOH A 2 439 2 HOH HOH . H 6 HOH A 3 440 3 HOH HOH . H 6 HOH A 4 441 4 HOH HOH . H 6 HOH A 5 442 5 HOH HOH . H 6 HOH A 6 443 6 HOH HOH . H 6 HOH A 7 444 7 HOH HOH . H 6 HOH A 8 445 8 HOH HOH . H 6 HOH A 9 446 9 HOH HOH . H 6 HOH A 10 447 10 HOH HOH . H 6 HOH A 11 448 12 HOH HOH . H 6 HOH A 12 449 13 HOH HOH . I 6 HOH I 1 11 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 BU3 . . . D 4 26.446 35.979 -16.038 1 84.72 ? O6 BU3 434 A 1 HETATM 2 C C3 BU3 . . . D 4 27.707 35.637 -16.67 1 85.37 ? C3 BU3 434 A 1 HETATM 3 C C4 BU3 . . . D 4 27.74 34.151 -17.068 1 83.08 ? C4 BU3 434 A 1 HETATM 4 C C2 BU3 . . . D 4 28.871 35.965 -15.679 1 88.85 ? C2 BU3 434 A 1 HETATM 5 O O5 BU3 . . . D 4 28.604 37.111 -14.882 1 88.52 ? O5 BU3 434 A 1 HETATM 6 C C1 BU3 . . . D 4 30.285 36.092 -16.335 1 89.4 ? C1 BU3 434 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #