data_3S7H # _model_server_result.job_id bv56t3sLcymTZoFmhpfxGA _model_server_result.datetime_utc '2024-12-27 00:32:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 3S7H # _exptl.entry_id 3S7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S7H _cell.length_a 57.62 _cell.length_b 57.62 _cell.length_c 119.914 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 C C1 NAG . B NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3S7H _atom_sites.fract_transf_matrix[1][1] 0.017355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG B 1 400 400 NAG NAG . D 4 GOL B 1 401 401 GOL GOL . E 4 GOL B 1 402 402 GOL GOL . F 5 HOH A 1 27 27 HOH HOH . F 5 HOH A 2 29 29 HOH HOH . F 5 HOH A 3 39 39 HOH HOH . F 5 HOH A 4 64 64 HOH HOH . F 5 HOH A 5 71 71 HOH HOH . F 5 HOH A 6 79 79 HOH HOH . F 5 HOH A 7 80 80 HOH HOH . F 5 HOH A 8 98 98 HOH HOH . F 5 HOH A 9 99 99 HOH HOH . F 5 HOH A 10 101 101 HOH HOH . F 5 HOH A 11 148 148 HOH HOH . F 5 HOH A 12 173 173 HOH HOH . F 5 HOH A 13 174 174 HOH HOH . F 5 HOH A 14 175 175 HOH HOH . F 5 HOH A 15 188 188 HOH HOH . G 5 HOH B 1 1 1 HOH HOH . G 5 HOH B 2 2 2 HOH HOH . G 5 HOH B 3 3 3 HOH HOH . G 5 HOH B 4 4 4 HOH HOH . G 5 HOH B 5 5 5 HOH HOH . G 5 HOH B 6 6 6 HOH HOH . G 5 HOH B 7 7 7 HOH HOH . G 5 HOH B 8 8 8 HOH HOH . G 5 HOH B 9 9 9 HOH HOH . G 5 HOH B 10 10 10 HOH HOH . G 5 HOH B 11 11 11 HOH HOH . G 5 HOH B 12 12 12 HOH HOH . G 5 HOH B 13 13 13 HOH HOH . G 5 HOH B 14 14 14 HOH HOH . G 5 HOH B 15 15 15 HOH HOH . G 5 HOH B 16 147 147 HOH HOH . G 5 HOH B 17 149 149 HOH HOH . G 5 HOH B 18 248 16 HOH HOH . G 5 HOH B 19 249 17 HOH HOH . G 5 HOH B 20 250 18 HOH HOH . G 5 HOH B 21 251 19 HOH HOH . G 5 HOH B 22 252 20 HOH HOH . G 5 HOH B 23 253 21 HOH HOH . G 5 HOH B 24 254 22 HOH HOH . G 5 HOH B 25 255 23 HOH HOH . G 5 HOH B 26 256 24 HOH HOH . G 5 HOH B 27 257 25 HOH HOH . G 5 HOH B 28 258 26 HOH HOH . G 5 HOH B 29 259 28 HOH HOH . G 5 HOH B 30 260 30 HOH HOH . G 5 HOH B 31 261 31 HOH HOH . G 5 HOH B 32 262 32 HOH HOH . G 5 HOH B 33 263 33 HOH HOH . G 5 HOH B 34 264 34 HOH HOH . G 5 HOH B 35 265 35 HOH HOH . G 5 HOH B 36 266 36 HOH HOH . G 5 HOH B 37 267 37 HOH HOH . G 5 HOH B 38 268 38 HOH HOH . G 5 HOH B 39 269 40 HOH HOH . G 5 HOH B 40 270 41 HOH HOH . G 5 HOH B 41 271 42 HOH HOH . G 5 HOH B 42 272 43 HOH HOH . G 5 HOH B 43 273 44 HOH HOH . G 5 HOH B 44 274 45 HOH HOH . G 5 HOH B 45 275 46 HOH HOH . G 5 HOH B 46 276 47 HOH HOH . G 5 HOH B 47 277 48 HOH HOH . G 5 HOH B 48 278 49 HOH HOH . G 5 HOH B 49 279 50 HOH HOH . G 5 HOH B 50 280 51 HOH HOH . G 5 HOH B 51 281 52 HOH HOH . G 5 HOH B 52 282 53 HOH HOH . G 5 HOH B 53 283 54 HOH HOH . G 5 HOH B 54 284 55 HOH HOH . G 5 HOH B 55 285 56 HOH HOH . G 5 HOH B 56 286 57 HOH HOH . G 5 HOH B 57 287 58 HOH HOH . G 5 HOH B 58 288 59 HOH HOH . G 5 HOH B 59 289 60 HOH HOH . G 5 HOH B 60 290 61 HOH HOH . G 5 HOH B 61 291 62 HOH HOH . G 5 HOH B 62 292 63 HOH HOH . G 5 HOH B 63 293 65 HOH HOH . G 5 HOH B 64 294 66 HOH HOH . G 5 HOH B 65 295 67 HOH HOH . G 5 HOH B 66 296 68 HOH HOH . G 5 HOH B 67 297 69 HOH HOH . G 5 HOH B 68 298 70 HOH HOH . G 5 HOH B 69 299 72 HOH HOH . G 5 HOH B 70 300 73 HOH HOH . G 5 HOH B 71 301 74 HOH HOH . G 5 HOH B 72 302 75 HOH HOH . G 5 HOH B 73 303 76 HOH HOH . G 5 HOH B 74 304 77 HOH HOH . G 5 HOH B 75 305 78 HOH HOH . G 5 HOH B 76 306 81 HOH HOH . G 5 HOH B 77 307 82 HOH HOH . G 5 HOH B 78 308 83 HOH HOH . G 5 HOH B 79 309 84 HOH HOH . G 5 HOH B 80 310 85 HOH HOH . G 5 HOH B 81 311 86 HOH HOH . G 5 HOH B 82 312 87 HOH HOH . G 5 HOH B 83 313 88 HOH HOH . G 5 HOH B 84 314 89 HOH HOH . G 5 HOH B 85 315 90 HOH HOH . G 5 HOH B 86 316 91 HOH HOH . G 5 HOH B 87 317 92 HOH HOH . G 5 HOH B 88 318 93 HOH HOH . G 5 HOH B 89 319 94 HOH HOH . G 5 HOH B 90 320 95 HOH HOH . G 5 HOH B 91 321 96 HOH HOH . G 5 HOH B 92 322 97 HOH HOH . G 5 HOH B 93 323 100 HOH HOH . G 5 HOH B 94 324 102 HOH HOH . G 5 HOH B 95 325 103 HOH HOH . G 5 HOH B 96 326 104 HOH HOH . G 5 HOH B 97 327 105 HOH HOH . G 5 HOH B 98 328 106 HOH HOH . G 5 HOH B 99 329 107 HOH HOH . G 5 HOH B 100 330 108 HOH HOH . G 5 HOH B 101 331 109 HOH HOH . G 5 HOH B 102 332 110 HOH HOH . G 5 HOH B 103 333 111 HOH HOH . G 5 HOH B 104 334 112 HOH HOH . G 5 HOH B 105 335 113 HOH HOH . G 5 HOH B 106 336 114 HOH HOH . G 5 HOH B 107 337 115 HOH HOH . G 5 HOH B 108 338 116 HOH HOH . G 5 HOH B 109 339 117 HOH HOH . G 5 HOH B 110 340 118 HOH HOH . G 5 HOH B 111 341 119 HOH HOH . G 5 HOH B 112 342 120 HOH HOH . G 5 HOH B 113 343 121 HOH HOH . G 5 HOH B 114 344 122 HOH HOH . G 5 HOH B 115 345 123 HOH HOH . G 5 HOH B 116 346 124 HOH HOH . G 5 HOH B 117 347 125 HOH HOH . G 5 HOH B 118 348 126 HOH HOH . G 5 HOH B 119 349 127 HOH HOH . G 5 HOH B 120 350 128 HOH HOH . G 5 HOH B 121 351 129 HOH HOH . G 5 HOH B 122 352 130 HOH HOH . G 5 HOH B 123 353 131 HOH HOH . G 5 HOH B 124 354 132 HOH HOH . G 5 HOH B 125 355 133 HOH HOH . G 5 HOH B 126 356 134 HOH HOH . G 5 HOH B 127 357 135 HOH HOH . G 5 HOH B 128 358 136 HOH HOH . G 5 HOH B 129 359 137 HOH HOH . G 5 HOH B 130 360 138 HOH HOH . G 5 HOH B 131 361 139 HOH HOH . G 5 HOH B 132 362 140 HOH HOH . G 5 HOH B 133 363 141 HOH HOH . G 5 HOH B 134 364 142 HOH HOH . G 5 HOH B 135 365 143 HOH HOH . G 5 HOH B 136 366 144 HOH HOH . G 5 HOH B 137 367 145 HOH HOH . G 5 HOH B 138 368 146 HOH HOH . G 5 HOH B 139 369 150 HOH HOH . G 5 HOH B 140 370 151 HOH HOH . G 5 HOH B 141 371 152 HOH HOH . G 5 HOH B 142 372 153 HOH HOH . G 5 HOH B 143 373 154 HOH HOH . G 5 HOH B 144 374 155 HOH HOH . G 5 HOH B 145 375 156 HOH HOH . G 5 HOH B 146 376 157 HOH HOH . G 5 HOH B 147 377 158 HOH HOH . G 5 HOH B 148 378 159 HOH HOH . G 5 HOH B 149 379 160 HOH HOH . G 5 HOH B 150 380 161 HOH HOH . G 5 HOH B 151 381 162 HOH HOH . G 5 HOH B 152 382 163 HOH HOH . G 5 HOH B 153 383 164 HOH HOH . G 5 HOH B 154 384 165 HOH HOH . G 5 HOH B 155 385 166 HOH HOH . G 5 HOH B 156 386 167 HOH HOH . G 5 HOH B 157 387 168 HOH HOH . G 5 HOH B 158 388 169 HOH HOH . G 5 HOH B 159 389 170 HOH HOH . G 5 HOH B 160 390 171 HOH HOH . G 5 HOH B 161 391 172 HOH HOH . G 5 HOH B 162 392 176 HOH HOH . G 5 HOH B 163 393 177 HOH HOH . G 5 HOH B 164 394 178 HOH HOH . G 5 HOH B 165 395 179 HOH HOH . G 5 HOH B 166 396 180 HOH HOH . G 5 HOH B 167 397 181 HOH HOH . G 5 HOH B 168 398 182 HOH HOH . G 5 HOH B 169 399 183 HOH HOH . G 5 HOH B 170 403 184 HOH HOH . G 5 HOH B 171 404 185 HOH HOH . G 5 HOH B 172 405 186 HOH HOH . G 5 HOH B 173 406 187 HOH HOH . G 5 HOH B 174 407 189 HOH HOH . G 5 HOH B 175 408 190 HOH HOH . G 5 HOH B 176 409 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 7.13 9.998 -16.06 1 49.57 ? C1 NAG 400 B 1 HETATM 2 C C2 NAG . . . C 3 7.906 8.683 -15.965 1 55.02 ? C2 NAG 400 B 1 HETATM 3 C C3 NAG . . . C 3 9.356 8.952 -15.561 1 56.1 ? C3 NAG 400 B 1 HETATM 4 C C4 NAG . . . C 3 10.017 10.033 -16.417 1 56.8 ? C4 NAG 400 B 1 HETATM 5 C C5 NAG . . . C 3 9.117 11.254 -16.619 1 55.98 ? C5 NAG 400 B 1 HETATM 6 C C6 NAG . . . C 3 9.676 12.147 -17.725 1 57.17 ? C6 NAG 400 B 1 HETATM 7 C C7 NAG . . . C 3 6.897 6.517 -15.281 1 57.28 ? C7 NAG 400 B 1 HETATM 8 C C8 NAG . . . C 3 6.972 6.013 -16.698 1 57.41 ? C8 NAG 400 B 1 HETATM 9 N N2 NAG . . . C 3 7.328 7.755 -15.002 1 56.14 ? N2 NAG 400 B 1 HETATM 10 O O3 NAG . . . C 3 10.1 7.758 -15.672 1 57.3 ? O3 NAG 400 B 1 HETATM 11 O O4 NAG . . . C 3 11.215 10.432 -15.783 1 58.28 ? O4 NAG 400 B 1 HETATM 12 O O5 NAG . . . C 3 7.797 10.861 -16.97 1 53.53 ? O5 NAG 400 B 1 HETATM 13 O O6 NAG . . . C 3 8.821 13.251 -17.934 1 58.8 ? O6 NAG 400 B 1 HETATM 14 O O7 NAG . . . C 3 6.431 5.784 -14.406 1 58.39 ? O7 NAG 400 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #