data_3S7L # _model_server_result.job_id TJvnDJenKK0v-1j8DUwdLw _model_server_result.datetime_utc '2024-11-22 22:12:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3S7L # _exptl.entry_id 3S7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.4 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-2-amino-5-(1-ethyl-1H-pyrazol-4-yl)-3-methyl-5-[3-(pyrimidin-5-yl)phenyl]-3,5-dihydro-4H-imidazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.82 _cell.angle_gamma 90 _cell.entry_id 3S7L _cell.length_a 72.835 _cell.length_b 103.749 _cell.length_c 50.411 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 217 1_555 A SG CYS 375 A CYS 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 233 A CYS 279 1_555 A SG CYS 398 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 285 A CYS 331 1_555 A SG CYS 335 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C19 H19 N7 O' _chem_comp.formula_weight 361.4 _chem_comp.id 591 _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-2-amino-5-(1-ethyl-1H-pyrazol-4-yl)-3-methyl-5-[3-(pyrimidin-5-yl)phenyl]-3,5-dihydro-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms WAY-256591 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 591 sing 1 n n C1 H1 591 sing 2 n n C1 H1A 591 sing 3 n n C1 H1B 591 sing 4 n n N2 N1 591 sing 5 n y N1 C3 591 sing 6 n y N1 C2 591 sing 7 n n C7 O1 591 doub 8 n n C2 H2 591 sing 9 n n C2 H2A 591 sing 10 n n C5 N2 591 doub 11 n y C4 C3 591 doub 12 n y C3 H3 591 sing 13 n n C8 N3 591 sing 14 n n N3 C7 591 sing 15 n n N3 C9 591 sing 16 n n C5 C4 591 sing 17 n y C6 C4 591 sing 18 n n N4 C8 591 doub 19 n n N4 C6 591 sing 20 n n C5 H5 591 sing 21 n n N5 C8 591 sing 22 n n N5 HN5 591 sing 23 n n N5 HN5A 591 sing 24 n n C10 C6 591 sing 25 n n C6 C7 591 sing 26 n n N6 C17 591 doub 27 n y N6 C18 591 sing 28 n y C18 N7 591 doub 29 n y N7 C19 591 sing 30 n y C9 H9 591 sing 31 n n C9 H9A 591 sing 32 n n C9 H9B 591 sing 33 n n C15 C10 591 doub 34 n y C10 C11 591 sing 35 n y C12 C11 591 doub 36 n y C11 H11 591 sing 37 n n C13 C12 591 sing 38 n y C12 H12 591 sing 39 n n C14 C13 591 doub 40 n y C13 H13 591 sing 41 n n C16 C14 591 sing 42 n y C14 C15 591 sing 43 n y C15 H15 591 sing 44 n n C17 C16 591 sing 45 n y C16 C19 591 doub 46 n y C17 H17 591 sing 47 n n C18 H18 591 sing 48 n n C19 H19 591 sing 49 n n # _atom_sites.entry_id 3S7L _atom_sites.fract_transf_matrix[1][1] 0.01373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 591 A 1 1 1 591 591 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 12 12 HOH HOH . C 3 HOH A 11 13 13 HOH HOH . C 3 HOH A 12 14 14 HOH HOH . C 3 HOH A 13 15 15 HOH HOH . C 3 HOH A 14 16 16 HOH HOH . C 3 HOH A 15 17 17 HOH HOH . C 3 HOH A 16 18 18 HOH HOH . C 3 HOH A 17 19 19 HOH HOH . C 3 HOH A 18 20 20 HOH HOH . C 3 HOH A 19 21 21 HOH HOH . C 3 HOH A 20 22 22 HOH HOH . C 3 HOH A 21 23 23 HOH HOH . C 3 HOH A 22 24 24 HOH HOH . C 3 HOH A 23 25 25 HOH HOH . C 3 HOH A 24 26 26 HOH HOH . C 3 HOH A 25 27 27 HOH HOH . C 3 HOH A 26 28 28 HOH HOH . C 3 HOH A 27 29 29 HOH HOH . C 3 HOH A 28 30 30 HOH HOH . C 3 HOH A 29 31 31 HOH HOH . C 3 HOH A 30 32 32 HOH HOH . C 3 HOH A 31 33 33 HOH HOH . C 3 HOH A 32 34 34 HOH HOH . C 3 HOH A 33 35 35 HOH HOH . C 3 HOH A 34 36 36 HOH HOH . C 3 HOH A 35 37 37 HOH HOH . C 3 HOH A 36 38 38 HOH HOH . C 3 HOH A 37 39 39 HOH HOH . C 3 HOH A 38 40 40 HOH HOH . C 3 HOH A 39 41 41 HOH HOH . C 3 HOH A 40 42 42 HOH HOH . C 3 HOH A 41 43 43 HOH HOH . C 3 HOH A 42 44 44 HOH HOH . C 3 HOH A 43 45 45 HOH HOH . C 3 HOH A 44 46 46 HOH HOH . C 3 HOH A 45 462 1 HOH HOH . C 3 HOH A 46 463 47 HOH HOH . C 3 HOH A 47 464 48 HOH HOH . C 3 HOH A 48 465 49 HOH HOH . C 3 HOH A 49 466 50 HOH HOH . C 3 HOH A 50 467 51 HOH HOH . C 3 HOH A 51 468 52 HOH HOH . C 3 HOH A 52 469 53 HOH HOH . C 3 HOH A 53 470 54 HOH HOH . C 3 HOH A 54 471 55 HOH HOH . C 3 HOH A 55 472 57 HOH HOH . C 3 HOH A 56 473 58 HOH HOH . C 3 HOH A 57 474 59 HOH HOH . C 3 HOH A 58 475 60 HOH HOH . C 3 HOH A 59 476 61 HOH HOH . C 3 HOH A 60 477 62 HOH HOH . C 3 HOH A 61 478 63 HOH HOH . C 3 HOH A 62 479 64 HOH HOH . C 3 HOH A 63 480 65 HOH HOH . C 3 HOH A 64 481 66 HOH HOH . C 3 HOH A 65 482 67 HOH HOH . C 3 HOH A 66 483 68 HOH HOH . C 3 HOH A 67 484 69 HOH HOH . C 3 HOH A 68 485 70 HOH HOH . C 3 HOH A 69 486 71 HOH HOH . C 3 HOH A 70 487 72 HOH HOH . C 3 HOH A 71 488 73 HOH HOH . C 3 HOH A 72 489 74 HOH HOH . C 3 HOH A 73 490 75 HOH HOH . C 3 HOH A 74 491 76 HOH HOH . C 3 HOH A 75 492 78 HOH HOH . C 3 HOH A 76 493 79 HOH HOH . C 3 HOH A 77 494 80 HOH HOH . C 3 HOH A 78 495 81 HOH HOH . C 3 HOH A 79 496 82 HOH HOH . C 3 HOH A 80 497 83 HOH HOH . C 3 HOH A 81 498 84 HOH HOH . C 3 HOH A 82 499 85 HOH HOH . C 3 HOH A 83 500 86 HOH HOH . C 3 HOH A 84 501 87 HOH HOH . C 3 HOH A 85 502 88 HOH HOH . C 3 HOH A 86 503 89 HOH HOH . C 3 HOH A 87 504 90 HOH HOH . C 3 HOH A 88 505 91 HOH HOH . C 3 HOH A 89 506 92 HOH HOH . C 3 HOH A 90 507 93 HOH HOH . C 3 HOH A 91 508 94 HOH HOH . C 3 HOH A 92 509 96 HOH HOH . C 3 HOH A 93 510 97 HOH HOH . C 3 HOH A 94 511 98 HOH HOH . C 3 HOH A 95 512 99 HOH HOH . C 3 HOH A 96 513 100 HOH HOH . C 3 HOH A 97 514 101 HOH HOH . C 3 HOH A 98 515 102 HOH HOH . C 3 HOH A 99 516 103 HOH HOH . C 3 HOH A 100 517 104 HOH HOH . C 3 HOH A 101 518 105 HOH HOH . C 3 HOH A 102 519 106 HOH HOH . C 3 HOH A 103 520 107 HOH HOH . C 3 HOH A 104 521 109 HOH HOH . C 3 HOH A 105 522 110 HOH HOH . C 3 HOH A 106 523 111 HOH HOH . C 3 HOH A 107 524 112 HOH HOH . C 3 HOH A 108 525 113 HOH HOH . C 3 HOH A 109 526 114 HOH HOH . C 3 HOH A 110 527 115 HOH HOH . C 3 HOH A 111 528 116 HOH HOH . C 3 HOH A 112 529 117 HOH HOH . C 3 HOH A 113 530 118 HOH HOH . C 3 HOH A 114 531 119 HOH HOH . C 3 HOH A 115 532 120 HOH HOH . C 3 HOH A 116 533 121 HOH HOH . C 3 HOH A 117 534 122 HOH HOH . C 3 HOH A 118 535 123 HOH HOH . C 3 HOH A 119 536 124 HOH HOH . C 3 HOH A 120 537 125 HOH HOH . C 3 HOH A 121 538 126 HOH HOH . C 3 HOH A 122 539 127 HOH HOH . C 3 HOH A 123 540 128 HOH HOH . C 3 HOH A 124 541 129 HOH HOH . C 3 HOH A 125 542 130 HOH HOH . C 3 HOH A 126 543 131 HOH HOH . C 3 HOH A 127 544 132 HOH HOH . C 3 HOH A 128 545 134 HOH HOH . C 3 HOH A 129 546 135 HOH HOH . C 3 HOH A 130 547 136 HOH HOH . C 3 HOH A 131 548 137 HOH HOH . C 3 HOH A 132 549 139 HOH HOH . C 3 HOH A 133 550 140 HOH HOH . C 3 HOH A 134 551 141 HOH HOH . C 3 HOH A 135 552 142 HOH HOH . C 3 HOH A 136 553 143 HOH HOH . C 3 HOH A 137 554 144 HOH HOH . C 3 HOH A 138 555 145 HOH HOH . C 3 HOH A 139 556 146 HOH HOH . C 3 HOH A 140 557 147 HOH HOH . C 3 HOH A 141 558 148 HOH HOH . C 3 HOH A 142 559 149 HOH HOH . C 3 HOH A 143 560 150 HOH HOH . C 3 HOH A 144 561 151 HOH HOH . C 3 HOH A 145 562 152 HOH HOH . C 3 HOH A 146 563 153 HOH HOH . C 3 HOH A 147 564 154 HOH HOH . C 3 HOH A 148 565 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 591 . . . B 2 17.553 -11.15 18.723 1 32.76 ? C1 591 1 A 1 HETATM 2 N N1 591 . . . B 2 15.494 -10.165 17.993 1 31.03 ? N1 591 1 A 1 HETATM 3 O O1 591 . . . B 2 14.194 -6.049 18.922 1 29.49 ? O1 591 1 A 1 HETATM 4 C C2 591 . . . B 2 16.059 -11.077 18.961 1 26.76 ? C2 591 1 A 1 HETATM 5 N N2 591 . . . B 2 15.308 -10.577 16.734 1 23.73 ? N2 591 1 A 1 HETATM 6 C C3 591 . . . B 2 15.117 -8.881 18.209 1 24.39 ? C3 591 1 A 1 HETATM 7 N N3 591 . . . B 2 15.185 -5.063 17.095 1 22.85 ? N3 591 1 A 1 HETATM 8 C C4 591 . . . B 2 14.644 -8.422 17.005 1 22.37 ? C4 591 1 A 1 HETATM 9 N N4 591 . . . B 2 14.854 -6.586 15.485 1 21.11 ? N4 591 1 A 1 HETATM 10 C C5 591 . . . B 2 14.791 -9.518 16.132 1 23.78 ? C5 591 1 A 1 HETATM 11 N N5 591 . . . B 2 16.233 -4.869 15.02 1 19.22 ? N5 591 1 A 1 HETATM 12 C C6 591 . . . B 2 14.121 -7.065 16.686 1 22.07 ? C6 591 1 A 1 HETATM 13 N N6 591 . . . B 2 9.654 -2.933 13.861 1 28.6 ? N6 591 1 A 1 HETATM 14 C C7 591 . . . B 2 14.49 -6.028 17.741 1 20.69 ? C7 591 1 A 1 HETATM 15 N N7 591 . . . B 2 8.243 -2.941 15.783 1 31.31 ? N7 591 1 A 1 HETATM 16 C C8 591 . . . B 2 15.295 -5.42 15.796 1 20.59 ? C8 591 1 A 1 HETATM 17 C C9 591 . . . B 2 15.703 -3.899 17.771 1 16.42 ? C9 591 1 A 1 HETATM 18 C C10 591 . . . B 2 12.59 -7.121 16.584 1 25.84 ? C10 591 1 A 1 HETATM 19 C C11 591 . . . B 2 11.828 -8.248 16.957 1 27.03 ? C11 591 1 A 1 HETATM 20 C C12 591 . . . B 2 10.442 -8.238 16.844 1 23.59 ? C12 591 1 A 1 HETATM 21 C C13 591 . . . B 2 9.785 -7.107 16.367 1 23.09 ? C13 591 1 A 1 HETATM 22 C C14 591 . . . B 2 10.505 -5.96 15.985 1 26.35 ? C14 591 1 A 1 HETATM 23 C C15 591 . . . B 2 11.898 -5.994 16.109 1 21.24 ? C15 591 1 A 1 HETATM 24 C C16 591 . . . B 2 9.873 -4.724 15.498 1 23.52 ? C16 591 1 A 1 HETATM 25 C C17 591 . . . B 2 10.23 -4.078 14.319 1 23.72 ? C17 591 1 A 1 HETATM 26 C C18 591 . . . B 2 8.678 -2.415 14.626 1 23.97 ? C18 591 1 A 1 HETATM 27 C C19 591 . . . B 2 8.856 -4.084 16.189 1 20.61 ? C19 591 1 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #