data_3S87
#
_model_server_result.job_id            gInZXUAm3xvaR6ieTl1LzA 
_model_server_result.datetime_utc      '2024-12-03 20:46:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2001}' 
#
_entry.id    3S87 
#
_exptl.entry_id    3S87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3S87 
_cell.length_a            107.618 
_cell.length_b            117.191 
_cell.length_c            65.524 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 117.191 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O HOH . A HOH 958 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc2 E O HOH . A HOH 986 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc3 C O1A DGT . A DGT 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc4 C O1B DGT . A DGT 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc5 C O1G DGT . A DGT 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc6 E O HOH . A HOH 1005 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3S87 
_atom_sites.fract_transf_matrix[1][1]    0.009292 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008533 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 2001 2001 MG MG . 
C 3 DGT A 1 1001 1001 DGT DGT . 
D 4 ADP A 1 1002 1002 ADP ADP . 
E 5 HOH A 1 889 1 HOH HOH . 
E 5 HOH A 2 890 2 HOH HOH . 
E 5 HOH A 3 891 3 HOH HOH . 
E 5 HOH A 4 892 4 HOH HOH . 
E 5 HOH A 5 893 5 HOH HOH . 
E 5 HOH A 6 894 6 HOH HOH . 
E 5 HOH A 7 895 7 HOH HOH . 
E 5 HOH A 8 896 8 HOH HOH . 
E 5 HOH A 9 897 9 HOH HOH . 
E 5 HOH A 10 898 10 HOH HOH . 
E 5 HOH A 11 899 11 HOH HOH . 
E 5 HOH A 12 900 12 HOH HOH . 
E 5 HOH A 13 901 13 HOH HOH . 
E 5 HOH A 14 902 14 HOH HOH . 
E 5 HOH A 15 903 15 HOH HOH . 
E 5 HOH A 16 904 16 HOH HOH . 
E 5 HOH A 17 905 17 HOH HOH . 
E 5 HOH A 18 906 18 HOH HOH . 
E 5 HOH A 19 907 19 HOH HOH . 
E 5 HOH A 20 908 20 HOH HOH . 
E 5 HOH A 21 909 21 HOH HOH . 
E 5 HOH A 22 910 22 HOH HOH . 
E 5 HOH A 23 911 23 HOH HOH . 
E 5 HOH A 24 912 24 HOH HOH . 
E 5 HOH A 25 913 25 HOH HOH . 
E 5 HOH A 26 914 26 HOH HOH . 
E 5 HOH A 27 915 27 HOH HOH . 
E 5 HOH A 28 916 28 HOH HOH . 
E 5 HOH A 29 917 29 HOH HOH . 
E 5 HOH A 30 918 31 HOH HOH . 
E 5 HOH A 31 919 32 HOH HOH . 
E 5 HOH A 32 920 33 HOH HOH . 
E 5 HOH A 33 921 34 HOH HOH . 
E 5 HOH A 34 922 35 HOH HOH . 
E 5 HOH A 35 923 36 HOH HOH . 
E 5 HOH A 36 924 37 HOH HOH . 
E 5 HOH A 37 925 38 HOH HOH . 
E 5 HOH A 38 926 39 HOH HOH . 
E 5 HOH A 39 927 40 HOH HOH . 
E 5 HOH A 40 928 41 HOH HOH . 
E 5 HOH A 41 929 42 HOH HOH . 
E 5 HOH A 42 930 43 HOH HOH . 
E 5 HOH A 43 931 44 HOH HOH . 
E 5 HOH A 44 932 45 HOH HOH . 
E 5 HOH A 45 933 46 HOH HOH . 
E 5 HOH A 46 934 47 HOH HOH . 
E 5 HOH A 47 935 49 HOH HOH . 
E 5 HOH A 48 936 50 HOH HOH . 
E 5 HOH A 49 937 51 HOH HOH . 
E 5 HOH A 50 938 52 HOH HOH . 
E 5 HOH A 51 939 53 HOH HOH . 
E 5 HOH A 52 940 54 HOH HOH . 
E 5 HOH A 53 941 55 HOH HOH . 
E 5 HOH A 54 942 56 HOH HOH . 
E 5 HOH A 55 943 57 HOH HOH . 
E 5 HOH A 56 944 58 HOH HOH . 
E 5 HOH A 57 945 59 HOH HOH . 
E 5 HOH A 58 946 60 HOH HOH . 
E 5 HOH A 59 947 61 HOH HOH . 
E 5 HOH A 60 948 62 HOH HOH . 
E 5 HOH A 61 949 63 HOH HOH . 
E 5 HOH A 62 950 64 HOH HOH . 
E 5 HOH A 63 951 65 HOH HOH . 
E 5 HOH A 64 952 66 HOH HOH . 
E 5 HOH A 65 953 67 HOH HOH . 
E 5 HOH A 66 954 68 HOH HOH . 
E 5 HOH A 67 955 69 HOH HOH . 
E 5 HOH A 68 956 70 HOH HOH . 
E 5 HOH A 69 957 72 HOH HOH . 
E 5 HOH A 70 958 73 HOH HOH . 
E 5 HOH A 71 959 74 HOH HOH . 
E 5 HOH A 72 960 76 HOH HOH . 
E 5 HOH A 73 961 77 HOH HOH . 
E 5 HOH A 74 962 78 HOH HOH . 
E 5 HOH A 75 963 79 HOH HOH . 
E 5 HOH A 76 964 80 HOH HOH . 
E 5 HOH A 77 965 81 HOH HOH . 
E 5 HOH A 78 966 83 HOH HOH . 
E 5 HOH A 79 967 85 HOH HOH . 
E 5 HOH A 80 968 86 HOH HOH . 
E 5 HOH A 81 969 87 HOH HOH . 
E 5 HOH A 82 970 89 HOH HOH . 
E 5 HOH A 83 971 90 HOH HOH . 
E 5 HOH A 84 972 91 HOH HOH . 
E 5 HOH A 85 973 93 HOH HOH . 
E 5 HOH A 86 974 94 HOH HOH . 
E 5 HOH A 87 975 95 HOH HOH . 
E 5 HOH A 88 976 96 HOH HOH . 
E 5 HOH A 89 977 97 HOH HOH . 
E 5 HOH A 90 978 99 HOH HOH . 
E 5 HOH A 91 979 100 HOH HOH . 
E 5 HOH A 92 980 101 HOH HOH . 
E 5 HOH A 93 981 103 HOH HOH . 
E 5 HOH A 94 982 104 HOH HOH . 
E 5 HOH A 95 983 105 HOH HOH . 
E 5 HOH A 96 984 106 HOH HOH . 
E 5 HOH A 97 985 108 HOH HOH . 
E 5 HOH A 98 986 109 HOH HOH . 
E 5 HOH A 99 987 110 HOH HOH . 
E 5 HOH A 100 988 111 HOH HOH . 
E 5 HOH A 101 989 112 HOH HOH . 
E 5 HOH A 102 990 113 HOH HOH . 
E 5 HOH A 103 991 114 HOH HOH . 
E 5 HOH A 104 992 115 HOH HOH . 
E 5 HOH A 105 993 117 HOH HOH . 
E 5 HOH A 106 994 118 HOH HOH . 
E 5 HOH A 107 995 119 HOH HOH . 
E 5 HOH A 108 996 120 HOH HOH . 
E 5 HOH A 109 997 121 HOH HOH . 
E 5 HOH A 110 998 122 HOH HOH . 
E 5 HOH A 111 999 125 HOH HOH . 
E 5 HOH A 112 1000 126 HOH HOH . 
E 5 HOH A 113 1003 128 HOH HOH . 
E 5 HOH A 114 1004 129 HOH HOH . 
E 5 HOH A 115 1005 130 HOH HOH . 
E 5 HOH A 116 1006 131 HOH HOH . 
E 5 HOH A 117 1007 132 HOH HOH . 
E 5 HOH A 118 1008 133 HOH HOH . 
E 5 HOH A 119 1009 134 HOH HOH . 
E 5 HOH A 120 1010 135 HOH HOH . 
E 5 HOH A 121 1011 136 HOH HOH . 
E 5 HOH A 122 1012 137 HOH HOH . 
E 5 HOH A 123 1013 138 HOH HOH . 
E 5 HOH A 124 1014 139 HOH HOH . 
E 5 HOH A 125 1015 140 HOH HOH . 
E 5 HOH A 126 1016 142 HOH HOH . 
E 5 HOH A 127 1017 144 HOH HOH . 
E 5 HOH A 128 1018 146 HOH HOH . 
E 5 HOH A 129 1019 147 HOH HOH . 
E 5 HOH A 130 1020 148 HOH HOH . 
E 5 HOH A 131 1021 149 HOH HOH . 
E 5 HOH A 132 1022 150 HOH HOH . 
E 5 HOH A 133 1023 151 HOH HOH . 
E 5 HOH A 134 1024 153 HOH HOH . 
E 5 HOH A 135 1025 155 HOH HOH . 
E 5 HOH A 136 1026 156 HOH HOH . 
E 5 HOH A 137 1027 157 HOH HOH . 
E 5 HOH A 138 1028 159 HOH HOH . 
E 5 HOH A 139 1029 160 HOH HOH . 
E 5 HOH A 140 1030 161 HOH HOH . 
E 5 HOH A 141 1031 162 HOH HOH . 
E 5 HOH A 142 1032 163 HOH HOH . 
E 5 HOH A 143 1033 165 HOH HOH . 
E 5 HOH A 144 1034 167 HOH HOH . 
E 5 HOH A 145 1035 170 HOH HOH . 
E 5 HOH A 146 1036 171 HOH HOH . 
E 5 HOH A 147 1037 172 HOH HOH . 
E 5 HOH A 148 1038 173 HOH HOH . 
E 5 HOH A 149 1039 174 HOH HOH . 
E 5 HOH A 150 1040 175 HOH HOH . 
E 5 HOH A 151 1041 176 HOH HOH . 
E 5 HOH A 152 1042 177 HOH HOH . 
E 5 HOH A 153 1043 180 HOH HOH . 
E 5 HOH A 154 1044 181 HOH HOH . 
E 5 HOH A 155 1045 182 HOH HOH . 
E 5 HOH A 156 1046 183 HOH HOH . 
E 5 HOH A 157 1047 186 HOH HOH . 
E 5 HOH A 158 1048 187 HOH HOH . 
E 5 HOH A 159 1049 189 HOH HOH . 
E 5 HOH A 160 1050 192 HOH HOH . 
E 5 HOH A 161 1051 193 HOH HOH . 
E 5 HOH A 162 1052 194 HOH HOH . 
E 5 HOH A 163 1053 196 HOH HOH . 
E 5 HOH A 164 1054 199 HOH HOH . 
E 5 HOH A 165 1055 201 HOH HOH . 
E 5 HOH A 166 1056 202 HOH HOH . 
E 5 HOH A 167 1057 204 HOH HOH . 
E 5 HOH A 168 1058 206 HOH HOH . 
E 5 HOH A 169 1059 208 HOH HOH . 
E 5 HOH A 170 1060 210 HOH HOH . 
E 5 HOH A 171 1061 215 HOH HOH . 
E 5 HOH A 172 1062 217 HOH HOH . 
E 5 HOH A 173 1063 221 HOH HOH . 
E 5 HOH A 174 1064 223 HOH HOH . 
E 5 HOH A 175 1065 231 HOH HOH . 
E 5 HOH A 176 1066 236 HOH HOH . 
E 5 HOH A 177 1067 241 HOH HOH . 
E 5 HOH A 178 1068 246 HOH HOH . 
E 5 HOH A 179 1069 252 HOH HOH . 
E 5 HOH A 180 1070 253 HOH HOH . 
E 5 HOH A 181 1071 259 HOH HOH . 
E 5 HOH A 182 1072 261 HOH HOH . 
E 5 HOH A 183 1073 262 HOH HOH . 
E 5 HOH A 184 1074 263 HOH HOH . 
E 5 HOH A 185 1075 264 HOH HOH . 
E 5 HOH A 186 1076 265 HOH HOH . 
E 5 HOH A 187 1077 266 HOH HOH . 
E 5 HOH A 188 1078 267 HOH HOH . 
E 5 HOH A 189 1079 268 HOH HOH . 
E 5 HOH A 190 1080 269 HOH HOH . 
E 5 HOH A 191 1081 270 HOH HOH . 
E 5 HOH A 192 1082 271 HOH HOH . 
E 5 HOH A 193 1083 272 HOH HOH . 
E 5 HOH A 194 1084 273 HOH HOH . 
E 5 HOH A 195 1085 274 HOH HOH . 
E 5 HOH A 196 1086 275 HOH HOH . 
E 5 HOH A 197 1087 276 HOH HOH . 
E 5 HOH A 198 1088 277 HOH HOH . 
E 5 HOH A 199 1089 278 HOH HOH . 
E 5 HOH A 200 1090 279 HOH HOH . 
E 5 HOH A 201 1091 280 HOH HOH . 
E 5 HOH A 202 1092 281 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -10.223 
_atom_site.Cartn_y               46.303 
_atom_site.Cartn_z               29.008 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           2001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           1 
#