data_3S8C # _model_server_result.job_id nexCaXMG-KJjfe5RG92Fxg _model_server_result.datetime_utc '2024-12-02 11:51:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":889}' # _entry.id 3S8C # _exptl.entry_id 3S8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S8C _cell.length_a 107.781 _cell.length_b 116.81 _cell.length_c 64.126 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 116.81 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1A ANP . A ANP 889 1_555 C MG MG . A MG 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 B O2B ANP . A ANP 889 1_555 C MG MG . A MG 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc3 C MG MG . A MG 890 1_555 E O HOH . A HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3S8C _atom_sites.fract_transf_matrix[1][1] 0.009278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 889 1 ANP ANP . C 3 MG A 1 890 1 MG MG . D 4 CDP A 1 891 1 CDP CDP . E 5 HOH A 1 892 1 HOH HOH . E 5 HOH A 2 893 2 HOH HOH . E 5 HOH A 3 894 3 HOH HOH . E 5 HOH A 4 895 4 HOH HOH . E 5 HOH A 5 896 5 HOH HOH . E 5 HOH A 6 897 7 HOH HOH . E 5 HOH A 7 898 8 HOH HOH . E 5 HOH A 8 899 9 HOH HOH . E 5 HOH A 9 900 10 HOH HOH . E 5 HOH A 10 901 11 HOH HOH . E 5 HOH A 11 902 14 HOH HOH . E 5 HOH A 12 903 15 HOH HOH . E 5 HOH A 13 904 16 HOH HOH . E 5 HOH A 14 905 18 HOH HOH . E 5 HOH A 15 906 20 HOH HOH . E 5 HOH A 16 907 21 HOH HOH . E 5 HOH A 17 908 23 HOH HOH . E 5 HOH A 18 909 24 HOH HOH . E 5 HOH A 19 910 28 HOH HOH . E 5 HOH A 20 911 29 HOH HOH . E 5 HOH A 21 912 30 HOH HOH . E 5 HOH A 22 913 32 HOH HOH . E 5 HOH A 23 914 34 HOH HOH . E 5 HOH A 24 915 35 HOH HOH . E 5 HOH A 25 916 36 HOH HOH . E 5 HOH A 26 917 42 HOH HOH . E 5 HOH A 27 918 45 HOH HOH . E 5 HOH A 28 919 48 HOH HOH . E 5 HOH A 29 920 52 HOH HOH . E 5 HOH A 30 921 54 HOH HOH . E 5 HOH A 31 922 55 HOH HOH . E 5 HOH A 32 923 57 HOH HOH . E 5 HOH A 33 924 59 HOH HOH . E 5 HOH A 34 925 67 HOH HOH . E 5 HOH A 35 926 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -12.24 44.359 25.6 1 62.74 ? PG ANP 889 A 1 HETATM 2 O O1G ANP . . . B 2 -12.849 43.438 24.57 1 60.46 ? O1G ANP 889 A 1 HETATM 3 O O2G ANP . . . B 2 -12.804 44.225 27.006 1 63.47 ? O2G ANP 889 A 1 HETATM 4 O O3G ANP . . . B 2 -10.719 44.447 25.653 1 62.38 ? O3G ANP 889 A 1 HETATM 5 P PB ANP . . . B 2 -12.297 47.37 25.867 1 60.77 ? PB ANP 889 A 1 HETATM 6 O O1B ANP . . . B 2 -13.557 48.174 26.012 1 59.17 ? O1B ANP 889 A 1 HETATM 7 O O2B ANP . . . B 2 -11.486 47.08 27.124 1 58.96 ? O2B ANP 889 A 1 HETATM 8 N N3B ANP . . . B 2 -12.778 45.908 25.027 1 61.05 ? N3B ANP 889 A 1 HETATM 9 P PA ANP . . . B 2 -9.739 48.11 24.887 1 60.8 ? PA ANP 889 A 1 HETATM 10 O O1A ANP . . . B 2 -9.299 47.065 25.895 1 58.7 ? O1A ANP 889 A 1 HETATM 11 O O2A ANP . . . B 2 -9.294 49.557 25.03 1 59.66 ? O2A ANP 889 A 1 HETATM 12 O O3A ANP . . . B 2 -11.345 48.115 24.769 1 60.43 ? O3A ANP 889 A 1 HETATM 13 O O5' ANP . . . B 2 -9.351 47.566 23.439 1 55.35 ? O5' ANP 889 A 1 HETATM 14 C C5' ANP . . . B 2 -9.308 46.175 23.271 1 54.07 ? C5' ANP 889 A 1 HETATM 15 C C4' ANP . . . B 2 -8.539 45.942 21.999 1 54.29 ? C4' ANP 889 A 1 HETATM 16 O O4' ANP . . . B 2 -9.398 46.192 20.897 1 55.99 ? O4' ANP 889 A 1 HETATM 17 C C3' ANP . . . B 2 -7.312 46.805 21.838 1 54.99 ? C3' ANP 889 A 1 HETATM 18 O O3' ANP . . . B 2 -6.27 45.973 21.291 1 54.52 ? O3' ANP 889 A 1 HETATM 19 C C2' ANP . . . B 2 -7.726 47.805 20.813 1 55.36 ? C2' ANP 889 A 1 HETATM 20 O O2' ANP . . . B 2 -6.685 47.951 19.873 1 58.71 ? O2' ANP 889 A 1 HETATM 21 C C1' ANP . . . B 2 -8.912 47.228 20.074 1 55 ? C1' ANP 889 A 1 HETATM 22 N N9 ANP . . . B 2 -9.929 48.3 20.125 1 57.6 ? N9 ANP 889 A 1 HETATM 23 C C8 ANP . . . B 2 -10.75 48.599 21.168 1 57.32 ? C8 ANP 889 A 1 HETATM 24 N N7 ANP . . . B 2 -11.534 49.658 20.899 1 56.63 ? N7 ANP 889 A 1 HETATM 25 C C5 ANP . . . B 2 -11.21 50.058 19.665 1 57.12 ? C5 ANP 889 A 1 HETATM 26 C C6 ANP . . . B 2 -11.663 51.118 18.742 1 58.38 ? C6 ANP 889 A 1 HETATM 27 N N6 ANP . . . B 2 -12.642 51.96 19.139 1 63.06 ? N6 ANP 889 A 1 HETATM 28 N N1 ANP . . . B 2 -11.089 51.217 17.525 1 55.22 ? N1 ANP 889 A 1 HETATM 29 C C2 ANP . . . B 2 -10.133 50.365 17.144 1 53.73 ? C2 ANP 889 A 1 HETATM 30 N N3 ANP . . . B 2 -9.673 49.364 17.903 1 54.25 ? N3 ANP 889 A 1 HETATM 31 C C4 ANP . . . B 2 -10.16 49.172 19.15 1 56.51 ? C4 ANP 889 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #