data_3S8J
#
_model_server_result.job_id            vsROAa3jOOK_oBjF0gUwtQ 
_model_server_result.datetime_utc      '2025-01-10 06:54:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":187}' 
#
_entry.id    3S8J 
#
_exptl.entry_id    3S8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3S8J 
_cell.length_a            74.699 
_cell.length_b            74.699 
_cell.length_c            78.97 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,M 1 1 
B,G,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 45 A CYS 45 1_555 A SG CYS 89 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 142 A CYS 142 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 B SG CYS 45 B CYS 45 1_555 B SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 B SG CYS 142 B CYS 142 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A ND2 ASN 84 A ASN 84 1_555 C C1 NAG . A NAG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale2 B ND2 ASN 84 B ASN 84 1_555 G C1 NAG . B NAG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 139 n n 
C1 C2 GOL sing 140 n n 
C1 H11 GOL sing 141 n n 
C1 H12 GOL sing 142 n n 
O1 HO1 GOL sing 143 n n 
C2 O2 GOL sing 144 n n 
C2 C3 GOL sing 145 n n 
C2 H2 GOL sing 146 n n 
O2 HO2 GOL sing 147 n n 
C3 O3 GOL sing 148 n n 
C3 H31 GOL sing 149 n n 
C3 H32 GOL sing 150 n n 
O3 HO3 GOL sing 151 n n 
#
_atom_sites.entry_id                     3S8J 
_atom_sites.fract_transf_matrix[1][1]    0.013387 
_atom_sites.fract_transf_matrix[1][2]    0.007729 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 185 1 NAG NAG . 
D 3 ACT A 1 186 3 ACT ACT . 
E 4 GOL A 1 187 1 GOL GOL . 
F 5 FMT A 1 188 1 FMT FMT . 
G 2 NAG B 1 185 101 NAG NAG . 
H 3 ACT B 1 186 1 ACT ACT . 
I 3 ACT B 1 187 2 ACT ACT . 
J 3 ACT B 1 188 4 ACT ACT . 
K 3 ACT B 1 189 5 ACT ACT . 
L 5 FMT B 1 190 2 FMT FMT . 
M 6 HOH A 1 189 4 HOH HOH . 
M 6 HOH A 2 190 5 HOH HOH . 
M 6 HOH A 3 191 6 HOH HOH . 
M 6 HOH A 4 192 8 HOH HOH . 
M 6 HOH A 5 193 9 HOH HOH . 
M 6 HOH A 6 194 10 HOH HOH . 
M 6 HOH A 7 195 12 HOH HOH . 
M 6 HOH A 8 196 14 HOH HOH . 
M 6 HOH A 9 197 15 HOH HOH . 
M 6 HOH A 10 198 16 HOH HOH . 
M 6 HOH A 11 199 18 HOH HOH . 
M 6 HOH A 12 200 20 HOH HOH . 
M 6 HOH A 13 201 21 HOH HOH . 
M 6 HOH A 14 202 22 HOH HOH . 
M 6 HOH A 15 203 25 HOH HOH . 
M 6 HOH A 16 204 32 HOH HOH . 
M 6 HOH A 17 205 33 HOH HOH . 
M 6 HOH A 18 206 34 HOH HOH . 
M 6 HOH A 19 207 35 HOH HOH . 
M 6 HOH A 20 208 36 HOH HOH . 
M 6 HOH A 21 209 37 HOH HOH . 
M 6 HOH A 22 210 39 HOH HOH . 
M 6 HOH A 23 211 40 HOH HOH . 
M 6 HOH A 24 212 42 HOH HOH . 
M 6 HOH A 25 213 45 HOH HOH . 
M 6 HOH A 26 214 46 HOH HOH . 
M 6 HOH A 27 215 47 HOH HOH . 
M 6 HOH A 28 216 49 HOH HOH . 
M 6 HOH A 29 217 50 HOH HOH . 
M 6 HOH A 30 218 51 HOH HOH . 
M 6 HOH A 31 219 52 HOH HOH . 
M 6 HOH A 32 220 57 HOH HOH . 
M 6 HOH A 33 221 58 HOH HOH . 
M 6 HOH A 34 222 59 HOH HOH . 
M 6 HOH A 35 223 63 HOH HOH . 
M 6 HOH A 36 224 64 HOH HOH . 
M 6 HOH A 37 225 65 HOH HOH . 
M 6 HOH A 38 226 66 HOH HOH . 
M 6 HOH A 39 227 67 HOH HOH . 
M 6 HOH A 40 228 68 HOH HOH . 
M 6 HOH A 41 229 79 HOH HOH . 
M 6 HOH A 42 230 80 HOH HOH . 
M 6 HOH A 43 231 81 HOH HOH . 
M 6 HOH A 44 232 83 HOH HOH . 
M 6 HOH A 45 233 87 HOH HOH . 
M 6 HOH A 46 234 89 HOH HOH . 
M 6 HOH A 47 235 90 HOH HOH . 
M 6 HOH A 48 236 91 HOH HOH . 
M 6 HOH A 49 237 92 HOH HOH . 
M 6 HOH A 50 238 93 HOH HOH . 
M 6 HOH A 51 239 95 HOH HOH . 
M 6 HOH A 52 240 96 HOH HOH . 
M 6 HOH A 53 241 97 HOH HOH . 
N 6 HOH B 1 191 1 HOH HOH . 
N 6 HOH B 2 192 2 HOH HOH . 
N 6 HOH B 3 193 7 HOH HOH . 
N 6 HOH B 4 194 11 HOH HOH . 
N 6 HOH B 5 195 13 HOH HOH . 
N 6 HOH B 6 196 19 HOH HOH . 
N 6 HOH B 7 197 24 HOH HOH . 
N 6 HOH B 8 198 26 HOH HOH . 
N 6 HOH B 9 199 28 HOH HOH . 
N 6 HOH B 10 200 29 HOH HOH . 
N 6 HOH B 11 201 31 HOH HOH . 
N 6 HOH B 12 202 38 HOH HOH . 
N 6 HOH B 13 203 41 HOH HOH . 
N 6 HOH B 14 204 43 HOH HOH . 
N 6 HOH B 15 205 44 HOH HOH . 
N 6 HOH B 16 206 48 HOH HOH . 
N 6 HOH B 17 207 53 HOH HOH . 
N 6 HOH B 18 208 54 HOH HOH . 
N 6 HOH B 19 209 55 HOH HOH . 
N 6 HOH B 20 210 56 HOH HOH . 
N 6 HOH B 21 211 60 HOH HOH . 
N 6 HOH B 22 212 61 HOH HOH . 
N 6 HOH B 23 213 62 HOH HOH . 
N 6 HOH B 24 214 69 HOH HOH . 
N 6 HOH B 25 215 70 HOH HOH . 
N 6 HOH B 26 216 72 HOH HOH . 
N 6 HOH B 27 217 73 HOH HOH . 
N 6 HOH B 28 218 75 HOH HOH . 
N 6 HOH B 29 219 76 HOH HOH . 
N 6 HOH B 30 220 77 HOH HOH . 
N 6 HOH B 31 221 78 HOH HOH . 
N 6 HOH B 32 222 82 HOH HOH . 
N 6 HOH B 33 223 84 HOH HOH . 
N 6 HOH B 34 224 85 HOH HOH . 
N 6 HOH B 35 225 86 HOH HOH . 
N 6 HOH B 36 226 88 HOH HOH . 
N 6 HOH B 37 227 94 HOH HOH . 
N 6 HOH B 38 228 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -19.927 -14.183 -13.036 0.46 61.05 ? C1 GOL 187 A 1 
HETATM 2 O O1 GOL . . . E 4 -19.888 -13.477 -11.807 1 53.71 ? O1 GOL 187 A 1 
HETATM 3 C C2 GOL . . . E 4 -20.356 -15.652 -12.955 1 63.38 ? C2 GOL 187 A 1 
HETATM 4 O O2 GOL . . . E 4 -21.555 -15.867 -13.656 1 67.41 ? O2 GOL 187 A 1 
HETATM 5 C C3 GOL . . . E 4 -19.357 -16.552 -13.647 1 60.57 ? C3 GOL 187 A 1 
HETATM 6 O O3 GOL . . . E 4 -19.637 -17.891 -13.327 0.86 65.82 ? O3 GOL 187 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#