data_3S8J # _model_server_result.job_id jVMhm9fQPabgO2m6CAxehg _model_server_result.datetime_utc '2025-01-10 06:50:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":188}' # _entry.id 3S8J # _exptl.entry_id 3S8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S8J _cell.length_a 74.699 _cell.length_b 74.699 _cell.length_c 78.97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,M 1 1 B,G,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 45 1_555 A SG CYS 89 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 142 A CYS 142 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 B SG CYS 45 B CYS 45 1_555 B SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 142 B CYS 142 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 84 A ASN 84 1_555 C C1 NAG . A NAG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 B ND2 ASN 84 B ASN 84 1_555 G C1 NAG . B NAG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3S8J _atom_sites.fract_transf_matrix[1][1] 0.013387 _atom_sites.fract_transf_matrix[1][2] 0.007729 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 185 1 NAG NAG . D 3 ACT A 1 186 3 ACT ACT . E 4 GOL A 1 187 1 GOL GOL . F 5 FMT A 1 188 1 FMT FMT . G 2 NAG B 1 185 101 NAG NAG . H 3 ACT B 1 186 1 ACT ACT . I 3 ACT B 1 187 2 ACT ACT . J 3 ACT B 1 188 4 ACT ACT . K 3 ACT B 1 189 5 ACT ACT . L 5 FMT B 1 190 2 FMT FMT . M 6 HOH A 1 189 4 HOH HOH . M 6 HOH A 2 190 5 HOH HOH . M 6 HOH A 3 191 6 HOH HOH . M 6 HOH A 4 192 8 HOH HOH . M 6 HOH A 5 193 9 HOH HOH . M 6 HOH A 6 194 10 HOH HOH . M 6 HOH A 7 195 12 HOH HOH . M 6 HOH A 8 196 14 HOH HOH . M 6 HOH A 9 197 15 HOH HOH . M 6 HOH A 10 198 16 HOH HOH . M 6 HOH A 11 199 18 HOH HOH . M 6 HOH A 12 200 20 HOH HOH . M 6 HOH A 13 201 21 HOH HOH . M 6 HOH A 14 202 22 HOH HOH . M 6 HOH A 15 203 25 HOH HOH . M 6 HOH A 16 204 32 HOH HOH . M 6 HOH A 17 205 33 HOH HOH . M 6 HOH A 18 206 34 HOH HOH . M 6 HOH A 19 207 35 HOH HOH . M 6 HOH A 20 208 36 HOH HOH . M 6 HOH A 21 209 37 HOH HOH . M 6 HOH A 22 210 39 HOH HOH . M 6 HOH A 23 211 40 HOH HOH . M 6 HOH A 24 212 42 HOH HOH . M 6 HOH A 25 213 45 HOH HOH . M 6 HOH A 26 214 46 HOH HOH . M 6 HOH A 27 215 47 HOH HOH . M 6 HOH A 28 216 49 HOH HOH . M 6 HOH A 29 217 50 HOH HOH . M 6 HOH A 30 218 51 HOH HOH . M 6 HOH A 31 219 52 HOH HOH . M 6 HOH A 32 220 57 HOH HOH . M 6 HOH A 33 221 58 HOH HOH . M 6 HOH A 34 222 59 HOH HOH . M 6 HOH A 35 223 63 HOH HOH . M 6 HOH A 36 224 64 HOH HOH . M 6 HOH A 37 225 65 HOH HOH . M 6 HOH A 38 226 66 HOH HOH . M 6 HOH A 39 227 67 HOH HOH . M 6 HOH A 40 228 68 HOH HOH . M 6 HOH A 41 229 79 HOH HOH . M 6 HOH A 42 230 80 HOH HOH . M 6 HOH A 43 231 81 HOH HOH . M 6 HOH A 44 232 83 HOH HOH . M 6 HOH A 45 233 87 HOH HOH . M 6 HOH A 46 234 89 HOH HOH . M 6 HOH A 47 235 90 HOH HOH . M 6 HOH A 48 236 91 HOH HOH . M 6 HOH A 49 237 92 HOH HOH . M 6 HOH A 50 238 93 HOH HOH . M 6 HOH A 51 239 95 HOH HOH . M 6 HOH A 52 240 96 HOH HOH . M 6 HOH A 53 241 97 HOH HOH . N 6 HOH B 1 191 1 HOH HOH . N 6 HOH B 2 192 2 HOH HOH . N 6 HOH B 3 193 7 HOH HOH . N 6 HOH B 4 194 11 HOH HOH . N 6 HOH B 5 195 13 HOH HOH . N 6 HOH B 6 196 19 HOH HOH . N 6 HOH B 7 197 24 HOH HOH . N 6 HOH B 8 198 26 HOH HOH . N 6 HOH B 9 199 28 HOH HOH . N 6 HOH B 10 200 29 HOH HOH . N 6 HOH B 11 201 31 HOH HOH . N 6 HOH B 12 202 38 HOH HOH . N 6 HOH B 13 203 41 HOH HOH . N 6 HOH B 14 204 43 HOH HOH . N 6 HOH B 15 205 44 HOH HOH . N 6 HOH B 16 206 48 HOH HOH . N 6 HOH B 17 207 53 HOH HOH . N 6 HOH B 18 208 54 HOH HOH . N 6 HOH B 19 209 55 HOH HOH . N 6 HOH B 20 210 56 HOH HOH . N 6 HOH B 21 211 60 HOH HOH . N 6 HOH B 22 212 61 HOH HOH . N 6 HOH B 23 213 62 HOH HOH . N 6 HOH B 24 214 69 HOH HOH . N 6 HOH B 25 215 70 HOH HOH . N 6 HOH B 26 216 72 HOH HOH . N 6 HOH B 27 217 73 HOH HOH . N 6 HOH B 28 218 75 HOH HOH . N 6 HOH B 29 219 76 HOH HOH . N 6 HOH B 30 220 77 HOH HOH . N 6 HOH B 31 221 78 HOH HOH . N 6 HOH B 32 222 82 HOH HOH . N 6 HOH B 33 223 84 HOH HOH . N 6 HOH B 34 224 85 HOH HOH . N 6 HOH B 35 225 86 HOH HOH . N 6 HOH B 36 226 88 HOH HOH . N 6 HOH B 37 227 94 HOH HOH . N 6 HOH B 38 228 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . J 3 -10.576 -31.748 12.01 1 38.24 ? C ACT 188 B 1 HETATM 2 O O ACT . . . J 3 -9.418 -31.773 12.392 0.96 42.44 ? O ACT 188 B 1 HETATM 3 O OXT ACT . . . J 3 -11.35 -30.921 12.463 0.24 36.03 ? OXT ACT 188 B 1 HETATM 4 C CH3 ACT . . . J 3 -11.052 -32.739 10.978 0.74 47.36 ? CH3 ACT 188 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #