data_3S8O
#
_model_server_result.job_id            IhKju5Uhe3AoKEncIAHiJw 
_model_server_result.datetime_utc      '2024-12-26 16:39:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3S8O 
#
_exptl.entry_id    3S8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3S8O 
_cell.length_a            42.154 
_cell.length_b            42.154 
_cell.length_c            109.513 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 B ACE 1 1_555 B N PTR 2 B PTR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale2 B C PTR 2 B PTR 2 1_555 B N 02K 3 B 02K 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 B C 02K 3 B 02K 3 1_555 B N ASN 4 B ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale4 B C ASN 4 B ASN 4 1_555 B N NH2 5 B NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
metalc ? metalc1 C NA NA . A NA 1 1_555 E O HOH . A HOH 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc2 C NA NA . A NA 1 1_555 E O HOH . A HOH 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc3 C NA NA . A NA 1 1_555 E O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc4 C NA NA . A NA 1 1_555 E O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3S8O 
_atom_sites.fract_transf_matrix[1][1]    0.023723 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023723 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NA A 1 1 1 NA NA . 
D 4 CL A 1 170 1 CL CL . 
E 5 HOH A 1 2 2 HOH HOH . 
E 5 HOH A 2 3 3 HOH HOH . 
E 5 HOH A 3 4 4 HOH HOH . 
E 5 HOH A 4 7 7 HOH HOH . 
E 5 HOH A 5 8 8 HOH HOH . 
E 5 HOH A 6 9 9 HOH HOH . 
E 5 HOH A 7 10 10 HOH HOH . 
E 5 HOH A 8 11 11 HOH HOH . 
E 5 HOH A 9 12 12 HOH HOH . 
E 5 HOH A 10 13 13 HOH HOH . 
E 5 HOH A 11 14 14 HOH HOH . 
E 5 HOH A 12 15 15 HOH HOH . 
E 5 HOH A 13 16 16 HOH HOH . 
E 5 HOH A 14 17 17 HOH HOH . 
E 5 HOH A 15 18 18 HOH HOH . 
E 5 HOH A 16 19 19 HOH HOH . 
E 5 HOH A 17 20 20 HOH HOH . 
E 5 HOH A 18 21 21 HOH HOH . 
E 5 HOH A 19 22 22 HOH HOH . 
E 5 HOH A 20 23 23 HOH HOH . 
E 5 HOH A 21 24 24 HOH HOH . 
E 5 HOH A 22 25 25 HOH HOH . 
E 5 HOH A 23 26 26 HOH HOH . 
E 5 HOH A 24 27 27 HOH HOH . 
E 5 HOH A 25 28 28 HOH HOH . 
E 5 HOH A 26 29 29 HOH HOH . 
E 5 HOH A 27 30 30 HOH HOH . 
E 5 HOH A 28 31 31 HOH HOH . 
E 5 HOH A 29 32 32 HOH HOH . 
E 5 HOH A 30 33 33 HOH HOH . 
E 5 HOH A 31 34 34 HOH HOH . 
E 5 HOH A 32 35 35 HOH HOH . 
E 5 HOH A 33 36 36 HOH HOH . 
E 5 HOH A 34 37 37 HOH HOH . 
E 5 HOH A 35 38 38 HOH HOH . 
E 5 HOH A 36 39 39 HOH HOH . 
E 5 HOH A 37 40 40 HOH HOH . 
E 5 HOH A 38 41 41 HOH HOH . 
E 5 HOH A 39 42 42 HOH HOH . 
E 5 HOH A 40 43 43 HOH HOH . 
E 5 HOH A 41 44 44 HOH HOH . 
E 5 HOH A 42 45 45 HOH HOH . 
E 5 HOH A 43 46 46 HOH HOH . 
E 5 HOH A 44 47 47 HOH HOH . 
E 5 HOH A 45 48 48 HOH HOH . 
E 5 HOH A 46 49 49 HOH HOH . 
E 5 HOH A 47 50 50 HOH HOH . 
E 5 HOH A 48 51 51 HOH HOH . 
E 5 HOH A 49 52 52 HOH HOH . 
E 5 HOH A 50 171 53 HOH HOH . 
E 5 HOH A 51 172 54 HOH HOH . 
E 5 HOH A 52 173 55 HOH HOH . 
E 5 HOH A 53 174 56 HOH HOH . 
E 5 HOH A 54 175 57 HOH HOH . 
E 5 HOH A 55 176 58 HOH HOH . 
E 5 HOH A 56 177 59 HOH HOH . 
E 5 HOH A 57 178 60 HOH HOH . 
E 5 HOH A 58 179 61 HOH HOH . 
E 5 HOH A 59 180 62 HOH HOH . 
E 5 HOH A 60 181 63 HOH HOH . 
E 5 HOH A 61 182 64 HOH HOH . 
E 5 HOH A 62 183 65 HOH HOH . 
E 5 HOH A 63 184 66 HOH HOH . 
E 5 HOH A 64 185 67 HOH HOH . 
E 5 HOH A 65 186 68 HOH HOH . 
E 5 HOH A 66 187 69 HOH HOH . 
E 5 HOH A 67 188 70 HOH HOH . 
E 5 HOH A 68 189 71 HOH HOH . 
E 5 HOH A 69 190 72 HOH HOH . 
E 5 HOH A 70 191 73 HOH HOH . 
E 5 HOH A 71 192 74 HOH HOH . 
E 5 HOH A 72 193 75 HOH HOH . 
E 5 HOH A 73 194 76 HOH HOH . 
E 5 HOH A 74 195 77 HOH HOH . 
E 5 HOH A 75 196 78 HOH HOH . 
E 5 HOH A 76 197 79 HOH HOH . 
E 5 HOH A 77 198 81 HOH HOH . 
E 5 HOH A 78 199 82 HOH HOH . 
E 5 HOH A 79 200 84 HOH HOH . 
E 5 HOH A 80 201 85 HOH HOH . 
E 5 HOH A 81 202 86 HOH HOH . 
E 5 HOH A 82 203 87 HOH HOH . 
E 5 HOH A 83 204 88 HOH HOH . 
E 5 HOH A 84 205 89 HOH HOH . 
E 5 HOH A 85 206 90 HOH HOH . 
E 5 HOH A 86 207 91 HOH HOH . 
E 5 HOH A 87 208 92 HOH HOH . 
F 5 HOH B 1 6 6 HOH HOH . 
F 5 HOH B 2 7 1 HOH HOH . 
F 5 HOH B 3 8 5 HOH HOH . 
F 5 HOH B 4 80 80 HOH HOH . 
F 5 HOH B 5 83 83 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               11.031 
_atom_site.Cartn_y               -12.037 
_atom_site.Cartn_z               14.182 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        56.94 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#