data_3S98 # _model_server_result.job_id prwOhg44cPviAjvoCOXZTQ _model_server_result.datetime_utc '2024-11-29 15:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":307}' # _entry.id 3S98 # _exptl.entry_id 3S98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S98 _cell.length_a 47.09 _cell.length_b 86.18 _cell.length_c 91.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 52 1_555 A SG CYS 61 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 173 A CYS 172 1_555 A SG CYS 194 A CYS 193 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 257 A CYS 256 1_555 A SG CYS 265 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? covale ? covale1 A C GLY 43 A GLY 42 1_555 A N MSE 44 A MSE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 44 A MSE 43 1_555 A N ASP 45 A ASP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C VAL 128 A VAL 127 1_555 A N MSE 129 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 129 A MSE 128 1_555 A N TRP 130 A TRP 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A ND2 ASN 146 A ASN 145 1_555 B C1 NAG . A NAG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? covale ? covale6 A C ASN 228 A ASN 227 1_555 A N MSE 229 A MSE 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MSE 229 A MSE 228 1_555 A N THR 230 A THR 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3S98 _atom_sites.fract_transf_matrix[1][1] 0.021236 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 307 1 NAG NAG . C 3 HOH A 1 308 1 HOH HOH . C 3 HOH A 2 309 2 HOH HOH . C 3 HOH A 3 310 3 HOH HOH . C 3 HOH A 4 311 4 HOH HOH . C 3 HOH A 5 312 5 HOH HOH . C 3 HOH A 6 313 6 HOH HOH . C 3 HOH A 7 314 7 HOH HOH . C 3 HOH A 8 315 8 HOH HOH . C 3 HOH A 9 316 9 HOH HOH . C 3 HOH A 10 317 10 HOH HOH . C 3 HOH A 11 318 11 HOH HOH . C 3 HOH A 12 319 12 HOH HOH . C 3 HOH A 13 320 13 HOH HOH . C 3 HOH A 14 321 14 HOH HOH . C 3 HOH A 15 322 15 HOH HOH . C 3 HOH A 16 323 16 HOH HOH . C 3 HOH A 17 324 17 HOH HOH . C 3 HOH A 18 325 18 HOH HOH . C 3 HOH A 19 326 19 HOH HOH . C 3 HOH A 20 327 20 HOH HOH . C 3 HOH A 21 328 21 HOH HOH . C 3 HOH A 22 329 22 HOH HOH . C 3 HOH A 23 330 23 HOH HOH . C 3 HOH A 24 331 24 HOH HOH . C 3 HOH A 25 332 25 HOH HOH . C 3 HOH A 26 333 26 HOH HOH . C 3 HOH A 27 334 27 HOH HOH . C 3 HOH A 28 335 28 HOH HOH . C 3 HOH A 29 336 29 HOH HOH . C 3 HOH A 30 337 30 HOH HOH . C 3 HOH A 31 338 31 HOH HOH . C 3 HOH A 32 339 32 HOH HOH . C 3 HOH A 33 340 33 HOH HOH . C 3 HOH A 34 341 34 HOH HOH . C 3 HOH A 35 342 35 HOH HOH . C 3 HOH A 36 343 36 HOH HOH . C 3 HOH A 37 344 37 HOH HOH . C 3 HOH A 38 345 38 HOH HOH . C 3 HOH A 39 346 39 HOH HOH . C 3 HOH A 40 347 40 HOH HOH . C 3 HOH A 41 348 41 HOH HOH . C 3 HOH A 42 349 42 HOH HOH . C 3 HOH A 43 350 43 HOH HOH . C 3 HOH A 44 351 44 HOH HOH . C 3 HOH A 45 352 45 HOH HOH . C 3 HOH A 46 353 46 HOH HOH . C 3 HOH A 47 354 47 HOH HOH . C 3 HOH A 48 355 48 HOH HOH . C 3 HOH A 49 356 49 HOH HOH . C 3 HOH A 50 357 50 HOH HOH . C 3 HOH A 51 358 51 HOH HOH . C 3 HOH A 52 359 52 HOH HOH . C 3 HOH A 53 360 53 HOH HOH . C 3 HOH A 54 361 54 HOH HOH . C 3 HOH A 55 362 55 HOH HOH . C 3 HOH A 56 363 56 HOH HOH . C 3 HOH A 57 364 57 HOH HOH . C 3 HOH A 58 365 58 HOH HOH . C 3 HOH A 59 366 59 HOH HOH . C 3 HOH A 60 367 60 HOH HOH . C 3 HOH A 61 368 61 HOH HOH . C 3 HOH A 62 369 62 HOH HOH . C 3 HOH A 63 370 63 HOH HOH . C 3 HOH A 64 371 64 HOH HOH . C 3 HOH A 65 372 65 HOH HOH . C 3 HOH A 66 373 66 HOH HOH . C 3 HOH A 67 374 67 HOH HOH . C 3 HOH A 68 375 68 HOH HOH . C 3 HOH A 69 376 69 HOH HOH . C 3 HOH A 70 377 70 HOH HOH . C 3 HOH A 71 378 71 HOH HOH . C 3 HOH A 72 379 72 HOH HOH . C 3 HOH A 73 380 73 HOH HOH . C 3 HOH A 74 381 74 HOH HOH . C 3 HOH A 75 382 75 HOH HOH . C 3 HOH A 76 383 76 HOH HOH . C 3 HOH A 77 384 77 HOH HOH . C 3 HOH A 78 385 78 HOH HOH . C 3 HOH A 79 386 79 HOH HOH . C 3 HOH A 80 387 80 HOH HOH . C 3 HOH A 81 388 81 HOH HOH . C 3 HOH A 82 389 82 HOH HOH . C 3 HOH A 83 390 83 HOH HOH . C 3 HOH A 84 391 84 HOH HOH . C 3 HOH A 85 392 85 HOH HOH . C 3 HOH A 86 393 86 HOH HOH . C 3 HOH A 87 394 87 HOH HOH . C 3 HOH A 88 395 88 HOH HOH . C 3 HOH A 89 396 89 HOH HOH . C 3 HOH A 90 397 90 HOH HOH . C 3 HOH A 91 398 91 HOH HOH . C 3 HOH A 92 399 92 HOH HOH . C 3 HOH A 93 400 93 HOH HOH . C 3 HOH A 94 401 94 HOH HOH . C 3 HOH A 95 402 95 HOH HOH . C 3 HOH A 96 403 96 HOH HOH . C 3 HOH A 97 404 97 HOH HOH . C 3 HOH A 98 405 98 HOH HOH . C 3 HOH A 99 406 99 HOH HOH . C 3 HOH A 100 407 100 HOH HOH . C 3 HOH A 101 408 101 HOH HOH . C 3 HOH A 102 409 102 HOH HOH . C 3 HOH A 103 410 103 HOH HOH . C 3 HOH A 104 411 104 HOH HOH . C 3 HOH A 105 412 105 HOH HOH . C 3 HOH A 106 413 106 HOH HOH . C 3 HOH A 107 414 107 HOH HOH . C 3 HOH A 108 415 108 HOH HOH . C 3 HOH A 109 416 109 HOH HOH . C 3 HOH A 110 417 110 HOH HOH . C 3 HOH A 111 418 111 HOH HOH . C 3 HOH A 112 419 112 HOH HOH . C 3 HOH A 113 420 113 HOH HOH . C 3 HOH A 114 421 114 HOH HOH . C 3 HOH A 115 422 115 HOH HOH . C 3 HOH A 116 423 116 HOH HOH . C 3 HOH A 117 424 117 HOH HOH . C 3 HOH A 118 425 118 HOH HOH . C 3 HOH A 119 426 119 HOH HOH . C 3 HOH A 120 427 120 HOH HOH . C 3 HOH A 121 428 121 HOH HOH . C 3 HOH A 122 429 122 HOH HOH . C 3 HOH A 123 430 123 HOH HOH . C 3 HOH A 124 431 124 HOH HOH . C 3 HOH A 125 432 125 HOH HOH . C 3 HOH A 126 433 126 HOH HOH . C 3 HOH A 127 434 127 HOH HOH . C 3 HOH A 128 435 128 HOH HOH . C 3 HOH A 129 436 129 HOH HOH . C 3 HOH A 130 437 130 HOH HOH . C 3 HOH A 131 438 131 HOH HOH . C 3 HOH A 132 439 132 HOH HOH . C 3 HOH A 133 440 133 HOH HOH . C 3 HOH A 134 441 134 HOH HOH . C 3 HOH A 135 442 135 HOH HOH . C 3 HOH A 136 443 136 HOH HOH . C 3 HOH A 137 444 137 HOH HOH . C 3 HOH A 138 445 138 HOH HOH . C 3 HOH A 139 446 139 HOH HOH . C 3 HOH A 140 447 140 HOH HOH . C 3 HOH A 141 448 141 HOH HOH . C 3 HOH A 142 449 142 HOH HOH . C 3 HOH A 143 450 143 HOH HOH . C 3 HOH A 144 451 144 HOH HOH . C 3 HOH A 145 452 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -13.621 -39.959 -13.848 1 34.37 ? C1 NAG 307 A 1 HETATM 2 C C2 NAG . . . B 2 -12.384 -39.788 -13.014 1 30.67 ? C2 NAG 307 A 1 HETATM 3 C C3 NAG . . . B 2 -12.665 -39.987 -11.522 1 30.92 ? C3 NAG 307 A 1 HETATM 4 C C4 NAG . . . B 2 -13.828 -39.17 -11.116 1 37.13 ? C4 NAG 307 A 1 HETATM 5 C C5 NAG . . . B 2 -14.971 -39.51 -12.004 1 42.8 ? C5 NAG 307 A 1 HETATM 6 C C6 NAG . . . B 2 -16.122 -38.642 -11.681 1 45.93 ? C6 NAG 307 A 1 HETATM 7 C C7 NAG . . . B 2 -10.471 -40.405 -14.367 1 47.6 ? C7 NAG 307 A 1 HETATM 8 C C8 NAG . . . B 2 -9.455 -41.449 -14.63 1 44.98 ? C8 NAG 307 A 1 HETATM 9 N N2 NAG . . . B 2 -11.343 -40.676 -13.424 1 38.4 ? N2 NAG 307 A 1 HETATM 10 O O3 NAG . . . B 2 -11.575 -39.556 -10.818 1 32.86 ? O3 NAG 307 A 1 HETATM 11 O O4 NAG . . . B 2 -14.149 -39.551 -9.838 1 44.91 ? O4 NAG 307 A 1 HETATM 12 O O5 NAG . . . B 2 -14.674 -39.209 -13.328 1 40.49 ? O5 NAG 307 A 1 HETATM 13 O O6 NAG . . . B 2 -17.147 -39.128 -12.442 1 47.57 ? O6 NAG 307 A 1 HETATM 14 O O7 NAG . . . B 2 -10.477 -39.384 -14.998 1 38.91 ? O7 NAG 307 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #