data_3S9B # _model_server_result.job_id JeGAKPx2u0zBjGto9abRHA _model_server_result.datetime_utc '2024-11-05 00:34:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3S9B # _exptl.entry_id 3S9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S9B _cell.length_a 80.042 _cell.length_b 80.042 _cell.length_c 160.415 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 139 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 28 A CYS 42 1_555 A SG CYS 44 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 76 A CYS 91 1_555 A SG CYS 232 A CYS 245 1_555 ? ? ? E ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 120 A CYS 136 1_555 A SG CYS 186 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 150 A CYS 168 1_555 A SG CYS 165 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 A SG CYS 176 A CYS 191 1_555 A SG CYS 201 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 227 A ASN 245 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3S9B _atom_sites.fract_transf_matrix[1][1] 0.012493 _atom_sites.fract_transf_matrix[1][2] 0.007213 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 301 NAG NAG . C 3 HOH A 1 1 1 HOH TIP . C 3 HOH A 2 2 2 HOH TIP . C 3 HOH A 3 3 3 HOH TIP . C 3 HOH A 4 4 4 HOH TIP . C 3 HOH A 5 5 5 HOH TIP . C 3 HOH A 6 6 6 HOH TIP . C 3 HOH A 7 7 7 HOH TIP . C 3 HOH A 8 8 8 HOH TIP . C 3 HOH A 9 9 9 HOH TIP . C 3 HOH A 10 10 10 HOH TIP . C 3 HOH A 11 11 11 HOH TIP . C 3 HOH A 12 12 12 HOH TIP . C 3 HOH A 13 13 13 HOH TIP . C 3 HOH A 14 14 14 HOH TIP . C 3 HOH A 15 15 15 HOH TIP . C 3 HOH A 16 61 61 HOH TIP . C 3 HOH A 17 126 126 HOH TIP . C 3 HOH A 18 130 130 HOH TIP . C 3 HOH A 19 150 150 HOH TIP . C 3 HOH A 20 151 151 HOH TIP . C 3 HOH A 21 246 16 HOH TIP . C 3 HOH A 22 247 17 HOH TIP . C 3 HOH A 23 248 18 HOH TIP . C 3 HOH A 24 249 19 HOH TIP . C 3 HOH A 25 250 20 HOH TIP . C 3 HOH A 26 251 21 HOH TIP . C 3 HOH A 27 252 22 HOH TIP . C 3 HOH A 28 253 23 HOH TIP . C 3 HOH A 29 254 24 HOH TIP . C 3 HOH A 30 255 25 HOH TIP . C 3 HOH A 31 256 26 HOH TIP . C 3 HOH A 32 257 27 HOH TIP . C 3 HOH A 33 258 28 HOH TIP . C 3 HOH A 34 259 29 HOH TIP . C 3 HOH A 35 260 30 HOH TIP . C 3 HOH A 36 261 31 HOH TIP . C 3 HOH A 37 262 32 HOH TIP . C 3 HOH A 38 263 33 HOH TIP . C 3 HOH A 39 264 34 HOH TIP . C 3 HOH A 40 265 35 HOH TIP . C 3 HOH A 41 266 36 HOH TIP . C 3 HOH A 42 267 37 HOH TIP . C 3 HOH A 43 268 38 HOH TIP . C 3 HOH A 44 269 39 HOH TIP . C 3 HOH A 45 270 40 HOH TIP . C 3 HOH A 46 271 41 HOH TIP . C 3 HOH A 47 272 42 HOH TIP . C 3 HOH A 48 273 43 HOH TIP . C 3 HOH A 49 274 44 HOH TIP . C 3 HOH A 50 275 45 HOH TIP . C 3 HOH A 51 276 46 HOH TIP . C 3 HOH A 52 277 47 HOH TIP . C 3 HOH A 53 278 48 HOH TIP . C 3 HOH A 54 279 49 HOH TIP . C 3 HOH A 55 280 50 HOH TIP . C 3 HOH A 56 281 51 HOH TIP . C 3 HOH A 57 282 52 HOH TIP . C 3 HOH A 58 283 53 HOH TIP . C 3 HOH A 59 284 54 HOH TIP . C 3 HOH A 60 285 55 HOH TIP . C 3 HOH A 61 286 56 HOH TIP . C 3 HOH A 62 287 57 HOH TIP . C 3 HOH A 63 288 58 HOH TIP . C 3 HOH A 64 289 59 HOH TIP . C 3 HOH A 65 290 60 HOH TIP . C 3 HOH A 66 291 62 HOH TIP . C 3 HOH A 67 292 63 HOH TIP . C 3 HOH A 68 293 64 HOH TIP . C 3 HOH A 69 294 65 HOH TIP . C 3 HOH A 70 295 66 HOH TIP . C 3 HOH A 71 296 67 HOH TIP . C 3 HOH A 72 297 68 HOH TIP . C 3 HOH A 73 298 69 HOH TIP . C 3 HOH A 74 299 70 HOH TIP . C 3 HOH A 75 300 71 HOH TIP . C 3 HOH A 76 302 72 HOH TIP . C 3 HOH A 77 303 73 HOH TIP . C 3 HOH A 78 304 74 HOH TIP . C 3 HOH A 79 305 75 HOH TIP . C 3 HOH A 80 306 76 HOH TIP . C 3 HOH A 81 307 77 HOH TIP . C 3 HOH A 82 308 78 HOH TIP . C 3 HOH A 83 309 79 HOH TIP . C 3 HOH A 84 310 80 HOH TIP . C 3 HOH A 85 311 81 HOH TIP . C 3 HOH A 86 312 82 HOH TIP . C 3 HOH A 87 313 83 HOH TIP . C 3 HOH A 88 314 84 HOH TIP . C 3 HOH A 89 315 85 HOH TIP . C 3 HOH A 90 316 86 HOH TIP . C 3 HOH A 91 317 87 HOH TIP . C 3 HOH A 92 318 88 HOH TIP . C 3 HOH A 93 319 89 HOH TIP . C 3 HOH A 94 320 90 HOH TIP . C 3 HOH A 95 321 91 HOH TIP . C 3 HOH A 96 322 92 HOH TIP . C 3 HOH A 97 323 93 HOH TIP . C 3 HOH A 98 324 94 HOH TIP . C 3 HOH A 99 325 95 HOH TIP . C 3 HOH A 100 326 96 HOH TIP . C 3 HOH A 101 327 97 HOH TIP . C 3 HOH A 102 328 98 HOH TIP . C 3 HOH A 103 329 99 HOH TIP . C 3 HOH A 104 330 100 HOH TIP . C 3 HOH A 105 331 101 HOH TIP . C 3 HOH A 106 332 102 HOH TIP . C 3 HOH A 107 333 103 HOH TIP . C 3 HOH A 108 334 104 HOH TIP . C 3 HOH A 109 335 105 HOH TIP . C 3 HOH A 110 336 106 HOH TIP . C 3 HOH A 111 337 107 HOH TIP . C 3 HOH A 112 338 108 HOH TIP . C 3 HOH A 113 339 109 HOH TIP . C 3 HOH A 114 340 110 HOH TIP . C 3 HOH A 115 341 111 HOH TIP . C 3 HOH A 116 342 112 HOH TIP . C 3 HOH A 117 343 113 HOH TIP . C 3 HOH A 118 344 114 HOH TIP . C 3 HOH A 119 345 115 HOH TIP . C 3 HOH A 120 346 116 HOH TIP . C 3 HOH A 121 347 117 HOH TIP . C 3 HOH A 122 348 118 HOH TIP . C 3 HOH A 123 349 119 HOH TIP . C 3 HOH A 124 350 120 HOH TIP . C 3 HOH A 125 351 121 HOH TIP . C 3 HOH A 126 352 122 HOH TIP . C 3 HOH A 127 353 123 HOH TIP . C 3 HOH A 128 354 124 HOH TIP . C 3 HOH A 129 355 125 HOH TIP . C 3 HOH A 130 356 127 HOH TIP . C 3 HOH A 131 357 128 HOH TIP . C 3 HOH A 132 358 129 HOH TIP . C 3 HOH A 133 359 131 HOH TIP . C 3 HOH A 134 360 132 HOH TIP . C 3 HOH A 135 361 133 HOH TIP . C 3 HOH A 136 362 134 HOH TIP . C 3 HOH A 137 363 135 HOH TIP . C 3 HOH A 138 364 136 HOH TIP . C 3 HOH A 139 365 137 HOH TIP . C 3 HOH A 140 366 138 HOH TIP . C 3 HOH A 141 367 139 HOH TIP . C 3 HOH A 142 368 140 HOH TIP . C 3 HOH A 143 369 141 HOH TIP . C 3 HOH A 144 370 142 HOH TIP . C 3 HOH A 145 371 143 HOH TIP . C 3 HOH A 146 372 144 HOH TIP . C 3 HOH A 147 373 145 HOH TIP . C 3 HOH A 148 374 146 HOH TIP . C 3 HOH A 149 375 147 HOH TIP . C 3 HOH A 150 376 148 HOH TIP . C 3 HOH A 151 377 149 HOH TIP . C 3 HOH A 152 378 152 HOH TIP . C 3 HOH A 153 379 153 HOH TIP . C 3 HOH A 154 380 154 HOH TIP . C 3 HOH A 155 381 155 HOH TIP . C 3 HOH A 156 382 156 HOH TIP . C 3 HOH A 157 383 157 HOH TIP . C 3 HOH A 158 384 158 HOH TIP . C 3 HOH A 159 385 159 HOH TIP . C 3 HOH A 160 386 160 HOH TIP . C 3 HOH A 161 387 161 HOH TIP . C 3 HOH A 162 388 162 HOH TIP . C 3 HOH A 163 389 163 HOH TIP . C 3 HOH A 164 390 164 HOH TIP . C 3 HOH A 165 391 165 HOH TIP . C 3 HOH A 166 392 166 HOH TIP . C 3 HOH A 167 393 167 HOH TIP . C 3 HOH A 168 394 168 HOH TIP . C 3 HOH A 169 395 169 HOH TIP . C 3 HOH A 170 396 170 HOH TIP . C 3 HOH A 171 397 171 HOH TIP . C 3 HOH A 172 398 172 HOH TIP . C 3 HOH A 173 399 173 HOH TIP . C 3 HOH A 174 400 174 HOH TIP . C 3 HOH A 175 401 175 HOH TIP . C 3 HOH A 176 402 176 HOH TIP . C 3 HOH A 177 403 177 HOH TIP . C 3 HOH A 178 404 178 HOH TIP . C 3 HOH A 179 405 179 HOH TIP . C 3 HOH A 180 406 180 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -22.602 -9.635 1.965 1 54.55 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . B 2 -23.519 -8.494 1.506 1 59.06 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . B 2 -24.99 -8.896 1.625 1 60.28 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . B 2 -25.24 -10.221 0.912 1 59.02 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . B 2 -24.264 -11.283 1.43 1 59.62 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . B 2 -24.41 -12.593 0.685 1 55.97 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . B 2 -22.601 -6.289 1.798 1 61.95 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . B 2 -21.504 -5.682 2.658 1 62.61 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . B 2 -23.278 -7.311 2.308 1 57.67 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . B 2 -25.809 -7.887 1.051 1 66.82 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . B 2 -26.577 -10.641 1.143 1 61.51 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . B 2 -22.901 -10.838 1.244 1 54.76 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . B 2 -24.119 -12.431 -0.696 1 57.11 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . B 2 -22.823 -5.836 0.676 1 62.51 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #