data_3S9Q # _model_server_result.job_id 8_CYRZoZE5YErcw_OEXvAg _model_server_result.datetime_utc '2024-11-25 01:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":248}' # _entry.id 3S9Q # _exptl.entry_id 3S9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S9Q _cell.length_a 130.181 _cell.length_b 130.181 _cell.length_c 40.292 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.449 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3S9Q _atom_sites.fract_transf_matrix[1][1] 0.007682 _atom_sites.fract_transf_matrix[1][2] 0.004435 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 247 247 NAG NAG . C 3 GOL A 1 248 248 GOL GOL . D 3 GOL A 1 249 249 GOL GOL . E 4 HOH A 1 251 251 HOH HOH . E 4 HOH A 2 252 252 HOH HOH . E 4 HOH A 3 253 253 HOH HOH . E 4 HOH A 4 254 254 HOH HOH . E 4 HOH A 5 255 255 HOH HOH . E 4 HOH A 6 256 256 HOH HOH . E 4 HOH A 7 257 257 HOH HOH . E 4 HOH A 8 258 258 HOH HOH . E 4 HOH A 9 259 259 HOH HOH . E 4 HOH A 10 260 260 HOH HOH . E 4 HOH A 11 261 261 HOH HOH . E 4 HOH A 12 262 262 HOH HOH . E 4 HOH A 13 263 263 HOH HOH . E 4 HOH A 14 264 264 HOH HOH . E 4 HOH A 15 265 265 HOH HOH . E 4 HOH A 16 266 266 HOH HOH . E 4 HOH A 17 267 267 HOH HOH . E 4 HOH A 18 268 268 HOH HOH . E 4 HOH A 19 269 269 HOH HOH . E 4 HOH A 20 270 270 HOH HOH . E 4 HOH A 21 271 271 HOH HOH . E 4 HOH A 22 272 272 HOH HOH . E 4 HOH A 23 273 273 HOH HOH . E 4 HOH A 24 274 274 HOH HOH . E 4 HOH A 25 275 275 HOH HOH . E 4 HOH A 26 276 276 HOH HOH . E 4 HOH A 27 277 277 HOH HOH . E 4 HOH A 28 278 278 HOH HOH . E 4 HOH A 29 279 279 HOH HOH . E 4 HOH A 30 280 280 HOH HOH . E 4 HOH A 31 281 281 HOH HOH . E 4 HOH A 32 282 282 HOH HOH . E 4 HOH A 33 283 283 HOH HOH . E 4 HOH A 34 284 284 HOH HOH . E 4 HOH A 35 285 285 HOH HOH . E 4 HOH A 36 286 286 HOH HOH . E 4 HOH A 37 287 287 HOH HOH . E 4 HOH A 38 288 288 HOH HOH . E 4 HOH A 39 289 289 HOH HOH . E 4 HOH A 40 290 290 HOH HOH . E 4 HOH A 41 291 291 HOH HOH . E 4 HOH A 42 292 292 HOH HOH . E 4 HOH A 43 293 293 HOH HOH . E 4 HOH A 44 294 294 HOH HOH . E 4 HOH A 45 295 295 HOH HOH . E 4 HOH A 46 296 296 HOH HOH . E 4 HOH A 47 297 297 HOH HOH . E 4 HOH A 48 298 298 HOH HOH . E 4 HOH A 49 299 299 HOH HOH . E 4 HOH A 50 300 300 HOH HOH . E 4 HOH A 51 301 301 HOH HOH . E 4 HOH A 52 302 302 HOH HOH . E 4 HOH A 53 303 303 HOH HOH . E 4 HOH A 54 304 304 HOH HOH . E 4 HOH A 55 305 305 HOH HOH . E 4 HOH A 56 306 306 HOH HOH . E 4 HOH A 57 307 307 HOH HOH . E 4 HOH A 58 308 308 HOH HOH . E 4 HOH A 59 309 309 HOH HOH . E 4 HOH A 60 310 310 HOH HOH . E 4 HOH A 61 311 311 HOH HOH . E 4 HOH A 62 312 312 HOH HOH . E 4 HOH A 63 313 313 HOH HOH . E 4 HOH A 64 314 314 HOH HOH . E 4 HOH A 65 315 315 HOH HOH . E 4 HOH A 66 316 316 HOH HOH . E 4 HOH A 67 317 317 HOH HOH . E 4 HOH A 68 318 318 HOH HOH . E 4 HOH A 69 319 319 HOH HOH . E 4 HOH A 70 320 320 HOH HOH . E 4 HOH A 71 321 321 HOH HOH . E 4 HOH A 72 322 322 HOH HOH . E 4 HOH A 73 323 323 HOH HOH . E 4 HOH A 74 324 324 HOH HOH . E 4 HOH A 75 325 325 HOH HOH . E 4 HOH A 76 326 326 HOH HOH . E 4 HOH A 77 327 327 HOH HOH . E 4 HOH A 78 328 328 HOH HOH . E 4 HOH A 79 329 329 HOH HOH . E 4 HOH A 80 330 330 HOH HOH . E 4 HOH A 81 331 331 HOH HOH . E 4 HOH A 82 332 332 HOH HOH . E 4 HOH A 83 333 333 HOH HOH . E 4 HOH A 84 334 334 HOH HOH . E 4 HOH A 85 335 335 HOH HOH . E 4 HOH A 86 336 336 HOH HOH . E 4 HOH A 87 337 337 HOH HOH . E 4 HOH A 88 338 338 HOH HOH . E 4 HOH A 89 339 339 HOH HOH . E 4 HOH A 90 340 340 HOH HOH . E 4 HOH A 91 341 341 HOH HOH . E 4 HOH A 92 342 342 HOH HOH . E 4 HOH A 93 343 343 HOH HOH . E 4 HOH A 94 344 344 HOH HOH . E 4 HOH A 95 345 345 HOH HOH . E 4 HOH A 96 346 346 HOH HOH . E 4 HOH A 97 347 347 HOH HOH . E 4 HOH A 98 348 348 HOH HOH . E 4 HOH A 99 349 349 HOH HOH . E 4 HOH A 100 350 350 HOH HOH . E 4 HOH A 101 351 351 HOH HOH . E 4 HOH A 102 352 352 HOH HOH . E 4 HOH A 103 353 353 HOH HOH . E 4 HOH A 104 354 354 HOH HOH . E 4 HOH A 105 355 355 HOH HOH . E 4 HOH A 106 356 356 HOH HOH . E 4 HOH A 107 357 357 HOH HOH . E 4 HOH A 108 358 358 HOH HOH . E 4 HOH A 109 359 359 HOH HOH . E 4 HOH A 110 360 360 HOH HOH . E 4 HOH A 111 361 361 HOH HOH . E 4 HOH A 112 362 362 HOH HOH . E 4 HOH A 113 363 363 HOH HOH . E 4 HOH A 114 364 364 HOH HOH . E 4 HOH A 115 365 365 HOH HOH . E 4 HOH A 116 366 366 HOH HOH . E 4 HOH A 117 367 367 HOH HOH . E 4 HOH A 118 368 368 HOH HOH . E 4 HOH A 119 369 369 HOH HOH . E 4 HOH A 120 370 370 HOH HOH . E 4 HOH A 121 371 371 HOH HOH . E 4 HOH A 122 372 372 HOH HOH . E 4 HOH A 123 373 373 HOH HOH . E 4 HOH A 124 374 374 HOH HOH . E 4 HOH A 125 375 375 HOH HOH . E 4 HOH A 126 376 376 HOH HOH . E 4 HOH A 127 377 377 HOH HOH . E 4 HOH A 128 378 378 HOH HOH . E 4 HOH A 129 379 379 HOH HOH . E 4 HOH A 130 380 380 HOH HOH . E 4 HOH A 131 381 381 HOH HOH . E 4 HOH A 132 382 382 HOH HOH . E 4 HOH A 133 383 383 HOH HOH . E 4 HOH A 134 384 384 HOH HOH . E 4 HOH A 135 385 385 HOH HOH . E 4 HOH A 136 386 386 HOH HOH . E 4 HOH A 137 387 387 HOH HOH . E 4 HOH A 138 388 388 HOH HOH . E 4 HOH A 139 389 389 HOH HOH . E 4 HOH A 140 390 390 HOH HOH . E 4 HOH A 141 391 391 HOH HOH . E 4 HOH A 142 392 392 HOH HOH . E 4 HOH A 143 393 393 HOH HOH . E 4 HOH A 144 394 394 HOH HOH . E 4 HOH A 145 395 395 HOH HOH . E 4 HOH A 146 396 396 HOH HOH . E 4 HOH A 147 397 397 HOH HOH . E 4 HOH A 148 398 398 HOH HOH . E 4 HOH A 149 399 399 HOH HOH . E 4 HOH A 150 400 400 HOH HOH . E 4 HOH A 151 401 401 HOH HOH . E 4 HOH A 152 402 402 HOH HOH . E 4 HOH A 153 403 403 HOH HOH . E 4 HOH A 154 404 404 HOH HOH . E 4 HOH A 155 405 405 HOH HOH . E 4 HOH A 156 406 406 HOH HOH . E 4 HOH A 157 407 407 HOH HOH . E 4 HOH A 158 408 408 HOH HOH . E 4 HOH A 159 409 409 HOH HOH . E 4 HOH A 160 410 410 HOH HOH . E 4 HOH A 161 411 411 HOH HOH . E 4 HOH A 162 412 412 HOH HOH . E 4 HOH A 163 413 413 HOH HOH . E 4 HOH A 164 414 414 HOH HOH . E 4 HOH A 165 415 415 HOH HOH . E 4 HOH A 166 416 416 HOH HOH . E 4 HOH A 167 417 417 HOH HOH . E 4 HOH A 168 418 418 HOH HOH . E 4 HOH A 169 419 419 HOH HOH . E 4 HOH A 170 420 420 HOH HOH . E 4 HOH A 171 421 421 HOH HOH . E 4 HOH A 172 422 422 HOH HOH . E 4 HOH A 173 423 423 HOH HOH . E 4 HOH A 174 424 424 HOH HOH . E 4 HOH A 175 425 425 HOH HOH . E 4 HOH A 176 426 426 HOH HOH . E 4 HOH A 177 427 427 HOH HOH . E 4 HOH A 178 428 428 HOH HOH . E 4 HOH A 179 429 429 HOH HOH . E 4 HOH A 180 430 430 HOH HOH . E 4 HOH A 181 431 431 HOH HOH . E 4 HOH A 182 432 432 HOH HOH . E 4 HOH A 183 433 433 HOH HOH . E 4 HOH A 184 434 434 HOH HOH . E 4 HOH A 185 435 435 HOH HOH . E 4 HOH A 186 436 436 HOH HOH . E 4 HOH A 187 437 437 HOH HOH . E 4 HOH A 188 438 438 HOH HOH . E 4 HOH A 189 439 439 HOH HOH . E 4 HOH A 190 440 440 HOH HOH . E 4 HOH A 191 441 441 HOH HOH . E 4 HOH A 192 442 442 HOH HOH . E 4 HOH A 193 443 443 HOH HOH . E 4 HOH A 194 444 444 HOH HOH . E 4 HOH A 195 445 445 HOH HOH . E 4 HOH A 196 446 446 HOH HOH . E 4 HOH A 197 447 447 HOH HOH . E 4 HOH A 198 448 448 HOH HOH . E 4 HOH A 199 449 449 HOH HOH . E 4 HOH A 200 450 450 HOH HOH . E 4 HOH A 201 451 451 HOH HOH . E 4 HOH A 202 452 452 HOH HOH . E 4 HOH A 203 453 453 HOH HOH . E 4 HOH A 204 454 454 HOH HOH . E 4 HOH A 205 455 455 HOH HOH . E 4 HOH A 206 456 456 HOH HOH . E 4 HOH A 207 457 457 HOH HOH . E 4 HOH A 208 458 458 HOH HOH . E 4 HOH A 209 459 459 HOH HOH . E 4 HOH A 210 460 460 HOH HOH . E 4 HOH A 211 461 461 HOH HOH . E 4 HOH A 212 462 462 HOH HOH . E 4 HOH A 213 463 463 HOH HOH . E 4 HOH A 214 464 464 HOH HOH . E 4 HOH A 215 465 465 HOH HOH . E 4 HOH A 216 466 466 HOH HOH . E 4 HOH A 217 467 467 HOH HOH . E 4 HOH A 218 468 468 HOH HOH . E 4 HOH A 219 469 469 HOH HOH . E 4 HOH A 220 470 470 HOH HOH . E 4 HOH A 221 471 471 HOH HOH . E 4 HOH A 222 472 472 HOH HOH . E 4 HOH A 223 473 473 HOH HOH . E 4 HOH A 224 474 474 HOH HOH . E 4 HOH A 225 475 475 HOH HOH . E 4 HOH A 226 476 476 HOH HOH . E 4 HOH A 227 477 477 HOH HOH . E 4 HOH A 228 478 478 HOH HOH . E 4 HOH A 229 479 479 HOH HOH . E 4 HOH A 230 480 480 HOH HOH . E 4 HOH A 231 481 481 HOH HOH . E 4 HOH A 232 482 482 HOH HOH . E 4 HOH A 233 483 483 HOH HOH . E 4 HOH A 234 484 484 HOH HOH . E 4 HOH A 235 485 485 HOH HOH . E 4 HOH A 236 486 486 HOH HOH . E 4 HOH A 237 487 487 HOH HOH . E 4 HOH A 238 488 488 HOH HOH . E 4 HOH A 239 489 489 HOH HOH . E 4 HOH A 240 490 490 HOH HOH . E 4 HOH A 241 491 491 HOH HOH . E 4 HOH A 242 492 492 HOH HOH . E 4 HOH A 243 493 493 HOH HOH . E 4 HOH A 244 494 494 HOH HOH . E 4 HOH A 245 495 495 HOH HOH . E 4 HOH A 246 496 496 HOH HOH . E 4 HOH A 247 497 497 HOH HOH . E 4 HOH A 248 498 498 HOH HOH . E 4 HOH A 249 499 499 HOH HOH . E 4 HOH A 250 500 500 HOH HOH . E 4 HOH A 251 501 501 HOH HOH . E 4 HOH A 252 502 502 HOH HOH . E 4 HOH A 253 503 503 HOH HOH . E 4 HOH A 254 504 504 HOH HOH . E 4 HOH A 255 505 505 HOH HOH . E 4 HOH A 256 506 506 HOH HOH . E 4 HOH A 257 507 507 HOH HOH . E 4 HOH A 258 508 508 HOH HOH . E 4 HOH A 259 509 509 HOH HOH . E 4 HOH A 260 510 510 HOH HOH . E 4 HOH A 261 511 511 HOH HOH . E 4 HOH A 262 512 512 HOH HOH . E 4 HOH A 263 513 513 HOH HOH . E 4 HOH A 264 514 514 HOH HOH . E 4 HOH A 265 515 515 HOH HOH . E 4 HOH A 266 516 516 HOH HOH . E 4 HOH A 267 517 517 HOH HOH . E 4 HOH A 268 518 518 HOH HOH . E 4 HOH A 269 519 519 HOH HOH . E 4 HOH A 270 520 520 HOH HOH . E 4 HOH A 271 521 521 HOH HOH . E 4 HOH A 272 522 522 HOH HOH . E 4 HOH A 273 523 523 HOH HOH . E 4 HOH A 274 524 524 HOH HOH . E 4 HOH A 275 525 525 HOH HOH . E 4 HOH A 276 526 526 HOH HOH . E 4 HOH A 277 527 527 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -18.215 -4.395 9.006 1 30.88 ? C1 GOL 248 A 1 HETATM 2 O O1 GOL . . . C 3 -16.908 -4.935 9.241 1 32.52 ? O1 GOL 248 A 1 HETATM 3 C C2 GOL . . . C 3 -18.645 -3.464 10.155 1 27.38 ? C2 GOL 248 A 1 HETATM 4 O O2 GOL . . . C 3 -17.67 -3.239 11.172 1 25.91 ? O2 GOL 248 A 1 HETATM 5 C C3 GOL . . . C 3 -19.998 -3.977 10.663 1 29.42 ? C3 GOL 248 A 1 HETATM 6 O O3 GOL . . . C 3 -20.043 -4.337 12.028 1 22.75 ? O3 GOL 248 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 6 #