data_3S9S
#
_model_server_result.job_id            KbtfrSihyY8rS2108iCgLg 
_model_server_result.datetime_utc      '2024-11-13 07:17:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3S9S 
#
_exptl.entry_id    3S9S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              452.376 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(3,4-dichlorobenzyl)-2-methyl-N-[(1R)-1-phenylpropyl]-1H-benzimidazole-5-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3S9S 
_cell.length_a            56.086 
_cell.length_b            88.754 
_cell.length_c            122.605 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H23 Cl2 N3 O' 
_chem_comp.formula_weight    452.376 
_chem_comp.id                M0T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(3,4-dichlorobenzyl)-2-methyl-N-[(1R)-1-phenylpropyl]-1H-benzimidazole-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C4 M0T sing 218 n n 
N1 C3 M0T sing 219 n n 
N3 C16 M0T doub 220 n y 
N3 C18 M0T sing 221 n y 
C4 C5 M0T sing 222 n n 
C4 O1 M0T doub 223 n n 
C5 C6 M0T doub 224 n y 
C5 C19 M0T sing 225 n y 
C6 C7 M0T sing 226 n y 
C7 C8 M0T doub 227 n y 
C8 N2 M0T sing 228 n y 
C8 C18 M0T sing 229 n y 
C17 C16 M0T sing 230 n n 
C20 C21 M0T doub 231 n y 
C20 C3 M0T sing 232 n n 
C20 C25 M0T sing 233 n y 
C21 C22 M0T sing 234 n y 
C22 C23 M0T doub 235 n y 
C24 C23 M0T sing 236 n y 
C24 C25 M0T doub 237 n y 
C1 C2 M0T sing 238 n n 
C2 C3 M0T sing 239 n n 
N2 C9 M0T sing 240 n n 
N2 C16 M0T sing 241 n y 
C9 C10 M0T sing 242 n n 
C18 C19 M0T doub 243 n y 
C10 C15 M0T doub 244 n y 
C10 C11 M0T sing 245 n y 
C13 CL1 M0T sing 246 n n 
C13 C12 M0T sing 247 n y 
C13 C14 M0T doub 248 n y 
C15 C14 M0T sing 249 n y 
CL2 C14 M0T sing 250 n n 
C11 C12 M0T doub 251 n y 
N1 HN1 M0T sing 252 n n 
C6 H6 M0T sing 253 n n 
C7 H7 M0T sing 254 n n 
C17 H17 M0T sing 255 n n 
C17 H17A M0T sing 256 n n 
C17 H17B M0T sing 257 n n 
C21 H21 M0T sing 258 n n 
C22 H22 M0T sing 259 n n 
C24 H24 M0T sing 260 n n 
C1 H1 M0T sing 261 n n 
C1 H1A M0T sing 262 n n 
C1 H1B M0T sing 263 n n 
C2 H2 M0T sing 264 n n 
C2 H2A M0T sing 265 n n 
C3 H3 M0T sing 266 n n 
C9 H9 M0T sing 267 n n 
C9 H9A M0T sing 268 n n 
C19 H19 M0T sing 269 n n 
C23 H23 M0T sing 270 n n 
C25 H25 M0T sing 271 n n 
C15 H15 M0T sing 272 n n 
C11 H11 M0T sing 273 n n 
C12 H12 M0T sing 274 n n 
#
_atom_sites.entry_id                     3S9S 
_atom_sites.fract_transf_matrix[1][1]    0.01783 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011267 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008156 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 M0T A 1 1 1 M0T M0T . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 13 13 HOH HOH . 
D 4 HOH A 13 14 14 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 16 16 HOH HOH . 
D 4 HOH A 16 17 17 HOH HOH . 
D 4 HOH A 17 18 18 HOH HOH . 
D 4 HOH A 18 19 19 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 21 21 HOH HOH . 
D 4 HOH A 21 22 22 HOH HOH . 
D 4 HOH A 22 23 23 HOH HOH . 
D 4 HOH A 23 24 24 HOH HOH . 
D 4 HOH A 24 25 25 HOH HOH . 
D 4 HOH A 25 26 26 HOH HOH . 
D 4 HOH A 26 27 27 HOH HOH . 
D 4 HOH A 27 28 28 HOH HOH . 
D 4 HOH A 28 29 29 HOH HOH . 
D 4 HOH A 29 30 30 HOH HOH . 
D 4 HOH A 30 31 31 HOH HOH . 
D 4 HOH A 31 32 32 HOH HOH . 
D 4 HOH A 32 33 33 HOH HOH . 
D 4 HOH A 33 34 34 HOH HOH . 
D 4 HOH A 34 35 35 HOH HOH . 
D 4 HOH A 35 36 36 HOH HOH . 
D 4 HOH A 36 37 37 HOH HOH . 
D 4 HOH A 37 38 38 HOH HOH . 
D 4 HOH A 38 39 39 HOH HOH . 
D 4 HOH A 39 40 40 HOH HOH . 
D 4 HOH A 40 41 41 HOH HOH . 
D 4 HOH A 41 42 42 HOH HOH . 
D 4 HOH A 42 43 43 HOH HOH . 
D 4 HOH A 43 44 44 HOH HOH . 
D 4 HOH A 44 45 45 HOH HOH . 
D 4 HOH A 45 46 46 HOH HOH . 
D 4 HOH A 46 47 47 HOH HOH . 
D 4 HOH A 47 48 48 HOH HOH . 
D 4 HOH A 48 49 49 HOH HOH . 
D 4 HOH A 49 50 50 HOH HOH . 
D 4 HOH A 50 51 51 HOH HOH . 
D 4 HOH A 51 52 52 HOH HOH . 
D 4 HOH A 52 478 478 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 M0T . . . C 3 -21.288 19.622 -13.089 1 48.61 ? N1 M0T 1 A 1 
HETATM 2 N N3 M0T . . . C 3 -23.507 16.474 -9.666 1 45.6 ? N3 M0T 1 A 1 
HETATM 3 C C4 M0T . . . C 3 -22.657 19.7 -13.275 1 47.51 ? C4 M0T 1 A 1 
HETATM 4 C C5 M0T . . . C 3 -23.441 19.144 -12.167 1 46.7 ? C5 M0T 1 A 1 
HETATM 5 C C6 M0T . . . C 3 -24.629 19.75 -11.836 1 45.7 ? C6 M0T 1 A 1 
HETATM 6 C C7 M0T . . . C 3 -25.411 19.28 -10.804 1 44.99 ? C7 M0T 1 A 1 
HETATM 7 C C8 M0T . . . C 3 -24.915 18.174 -10.155 1 45.15 ? C8 M0T 1 A 1 
HETATM 8 C C17 M0T . . . C 3 -24.753 15.444 -7.757 1 47.21 ? C17 M0T 1 A 1 
HETATM 9 C C20 M0T . . . C 3 -20.225 21.77 -13.574 1 47.96 ? C20 M0T 1 A 1 
HETATM 10 C C21 M0T . . . C 3 -20.981 22.319 -12.563 1 47.2 ? C21 M0T 1 A 1 
HETATM 11 C C22 M0T . . . C 3 -20.831 23.639 -12.197 1 47.43 ? C22 M0T 1 A 1 
HETATM 12 C C24 M0T . . . C 3 -19.151 23.891 -13.867 1 48.14 ? C24 M0T 1 A 1 
HETATM 13 C C1 M0T . . . C 3 -19.221 18.297 -14.727 1 51.45 ? C1 M0T 1 A 1 
HETATM 14 O O1 M0T . . . C 3 -23.233 20.185 -14.238 1 47.11 ? O1 M0T 1 A 1 
HETATM 15 C C2 M0T . . . C 3 -19.059 19.652 -14.077 1 50.39 ? C2 M0T 1 A 1 
HETATM 16 N N2 M0T . . . C 3 -25.378 17.44 -9.106 1 45.27 ? N2 M0T 1 A 1 
HETATM 17 C C3 M0T . . . C 3 -20.397 20.342 -13.975 1 48.98 ? C3 M0T 1 A 1 
HETATM 18 C C9 M0T . . . C 3 -26.61 17.635 -8.395 1 46.5 ? C9 M0T 1 A 1 
HETATM 19 C C16 M0T . . . C 3 -24.517 16.427 -8.837 1 45.62 ? C16 M0T 1 A 1 
HETATM 20 C C18 M0T . . . C 3 -23.736 17.549 -10.481 1 45.84 ? C18 M0T 1 A 1 
HETATM 21 C C19 M0T . . . C 3 -22.955 18.03 -11.517 1 47.32 ? C19 M0T 1 A 1 
HETATM 22 C C23 M0T . . . C 3 -19.915 24.427 -12.856 1 47.74 ? C23 M0T 1 A 1 
HETATM 23 C C25 M0T . . . C 3 -19.307 22.569 -14.222 1 48.64 ? C25 M0T 1 A 1 
HETATM 24 C C10 M0T . A . C 3 -26.63 18.886 -7.592 0.5 47.3 ? C10 M0T 1 A 1 
HETATM 25 C C10 M0T . B . C 3 -26.484 18.79 -7.49 0.5 47.35 ? C10 M0T 1 A 1 
HETATM 26 C C13 M0T . A . C 3 -26.739 21.214 -6.13 0.5 48.9 ? C13 M0T 1 A 1 
HETATM 27 C C13 M0T . B . C 3 -26.301 20.931 -5.832 0.5 48.73 ? C13 M0T 1 A 1 
HETATM 28 C C15 M0T . A . C 3 -25.709 19.103 -6.596 0.5 47.62 ? C15 M0T 1 A 1 
HETATM 29 C C15 M0T . B . C 3 -27.434 19.776 -7.567 0.5 47.94 ? C15 M0T 1 A 1 
HETATM 30 CL CL1 M0T . A . C 3 -26.777 22.666 -5.196 0.5 51.11 ? CL1 M0T 1 A 1 
HETATM 31 CL CL1 M0T . B . C 3 -26.186 22.281 -4.787 0.5 49.67 ? CL1 M0T 1 A 1 
HETATM 32 CL CL2 M0T . A . C 3 -24.639 20.579 -4.63 0.5 48.76 ? CL2 M0T 1 A 1 
HETATM 33 CL CL2 M0T . B . C 3 -28.517 22.093 -6.819 0.5 50.3 ? CL2 M0T 1 A 1 
HETATM 34 C C11 M0T . A . C 3 -27.6 19.828 -7.846 0.5 47.43 ? C11 M0T 1 A 1 
HETATM 35 C C11 M0T . B . C 3 -25.448 18.862 -6.592 0.5 47.22 ? C11 M0T 1 A 1 
HETATM 36 C C12 M0T . A . C 3 -27.663 20.994 -7.122 0.5 48.12 ? C12 M0T 1 A 1 
HETATM 37 C C12 M0T . B . C 3 -25.353 19.942 -5.754 0.5 48.6 ? C12 M0T 1 A 1 
HETATM 38 C C14 M0T . A . C 3 -25.775 20.272 -5.877 0.5 48.8 ? C14 M0T 1 A 1 
HETATM 39 C C14 M0T . B . C 3 -27.335 20.853 -6.73 0.5 48.71 ? C14 M0T 1 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#