data_3SA2 # _model_server_result.job_id y6zoYOcrUd9gOPxyQ_jIUA _model_server_result.datetime_utc '2024-11-29 04:09:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sa2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":163}' # _entry.id 3SA2 # _exptl.entry_id 3SA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-[3-(5-methoxybiphenyl-3-yl)prop-1-yn-1-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SA2 _cell.length_a 78.265 _cell.length_b 78.265 _cell.length_c 66.997 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C22 H22 N4 O' _chem_comp.formula_weight 358.436 _chem_comp.id 7DR _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-[3-(5-methoxybiphenyl-3-yl)prop-1-yn-1-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 7DR doub 1 n y N1 C2 7DR sing 2 n y NAC C2 7DR sing 3 n n C2 N3 7DR doub 4 n y N3 C4 7DR sing 5 n y C5 C4 7DR doub 6 n y C4 CAO 7DR sing 7 n n C6 C5 7DR sing 8 n y C5 CAF 7DR sing 9 n n NAD C6 7DR sing 10 n n CAO CAA 7DR sing 11 n n CAA HAA 7DR sing 12 n n CAA HAAA 7DR sing 13 n n CAA HAAB 7DR sing 14 n n CAB OAS 7DR sing 15 n n CAB HAB 7DR sing 16 n n CAB HABA 7DR sing 17 n n CAB HABB 7DR sing 18 n n NAC HNAC 7DR sing 19 n n NAC HNAA 7DR sing 20 n n NAD HNAD 7DR sing 21 n n NAD HNAB 7DR sing 22 n n CAF CAE 7DR trip 23 n n CAE CAP 7DR sing 24 n n CAH CAG 7DR doub 25 n y CAG CAI 7DR sing 26 n y CAG HAG 7DR sing 27 n n CAJ CAH 7DR sing 28 n y CAH HAH 7DR sing 29 n n CAK CAI 7DR doub 30 n y CAI HAI 7DR sing 31 n n CAJ CAX 7DR doub 32 n y CAJ HAJ 7DR sing 33 n n CAX CAK 7DR sing 34 n y CAK HAK 7DR sing 35 n n CAU CAL 7DR doub 36 n y CAL CAW 7DR sing 37 n y CAL HAL 7DR sing 38 n n CAU CAM 7DR sing 39 n y CAM CAY 7DR doub 40 n y CAM HAM 7DR sing 41 n n CAY CAN 7DR sing 42 n y CAW CAN 7DR doub 43 n y CAN HAN 7DR sing 44 n n CAO HAO 7DR sing 45 n n CAO HAOA 7DR sing 46 n n CAP CAU 7DR sing 47 n n CAP HAP 7DR sing 48 n n CAP HAPA 7DR sing 49 n n CAW OAS 7DR sing 50 n n CAY CAX 7DR sing 51 n n # _atom_sites.entry_id 3SA2 _atom_sites.fract_transf_matrix[1][1] 0.012777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 207 207 NAP NAP . D 3 7DR A 1 163 1 7DR DRG . E 2 NAP B 1 207 207 NAP NAP . F 3 7DR B 1 163 1 7DR DRG . G 4 HOH A 1 164 1 HOH HOH . G 4 HOH A 2 165 2 HOH HOH . G 4 HOH A 3 166 3 HOH HOH . G 4 HOH A 4 167 4 HOH HOH . G 4 HOH A 5 168 7 HOH HOH . G 4 HOH A 6 169 14 HOH HOH . G 4 HOH A 7 170 15 HOH HOH . G 4 HOH A 8 171 16 HOH HOH . G 4 HOH A 9 172 18 HOH HOH . G 4 HOH A 10 173 20 HOH HOH . G 4 HOH A 11 174 21 HOH HOH . G 4 HOH A 12 175 24 HOH HOH . G 4 HOH A 13 176 25 HOH HOH . G 4 HOH A 14 177 26 HOH HOH . G 4 HOH A 15 178 30 HOH HOH . G 4 HOH A 16 179 32 HOH HOH . G 4 HOH A 17 180 33 HOH HOH . G 4 HOH A 18 181 34 HOH HOH . G 4 HOH A 19 182 36 HOH HOH . G 4 HOH A 20 183 40 HOH HOH . G 4 HOH A 21 184 43 HOH HOH . G 4 HOH A 22 185 45 HOH HOH . G 4 HOH A 23 186 47 HOH HOH . G 4 HOH A 24 187 48 HOH HOH . G 4 HOH A 25 188 50 HOH HOH . G 4 HOH A 26 189 52 HOH HOH . G 4 HOH A 27 190 54 HOH HOH . G 4 HOH A 28 191 55 HOH HOH . G 4 HOH A 29 192 57 HOH HOH . G 4 HOH A 30 193 60 HOH HOH . G 4 HOH A 31 194 64 HOH HOH . G 4 HOH A 32 195 65 HOH HOH . G 4 HOH A 33 196 68 HOH HOH . G 4 HOH A 34 197 69 HOH HOH . G 4 HOH A 35 198 72 HOH HOH . G 4 HOH A 36 199 75 HOH HOH . G 4 HOH A 37 200 77 HOH HOH . G 4 HOH A 38 201 79 HOH HOH . G 4 HOH A 39 202 80 HOH HOH . G 4 HOH A 40 203 87 HOH HOH . G 4 HOH A 41 204 88 HOH HOH . G 4 HOH A 42 205 93 HOH HOH . G 4 HOH A 43 206 95 HOH HOH . G 4 HOH A 44 208 96 HOH HOH . G 4 HOH A 45 209 102 HOH HOH . G 4 HOH A 46 210 104 HOH HOH . G 4 HOH A 47 211 105 HOH HOH . G 4 HOH A 48 212 108 HOH HOH . G 4 HOH A 49 213 111 HOH HOH . G 4 HOH A 50 214 112 HOH HOH . G 4 HOH A 51 215 113 HOH HOH . G 4 HOH A 52 216 115 HOH HOH . G 4 HOH A 53 217 116 HOH HOH . G 4 HOH A 54 218 120 HOH HOH . G 4 HOH A 55 219 121 HOH HOH . G 4 HOH A 56 220 122 HOH HOH . G 4 HOH A 57 221 124 HOH HOH . H 4 HOH B 1 164 5 HOH HOH . H 4 HOH B 2 165 6 HOH HOH . H 4 HOH B 3 166 8 HOH HOH . H 4 HOH B 4 167 9 HOH HOH . H 4 HOH B 5 168 10 HOH HOH . H 4 HOH B 6 169 11 HOH HOH . H 4 HOH B 7 170 12 HOH HOH . H 4 HOH B 8 171 13 HOH HOH . H 4 HOH B 9 172 17 HOH HOH . H 4 HOH B 10 173 19 HOH HOH . H 4 HOH B 11 174 27 HOH HOH . H 4 HOH B 12 175 28 HOH HOH . H 4 HOH B 13 176 29 HOH HOH . H 4 HOH B 14 177 31 HOH HOH . H 4 HOH B 15 178 35 HOH HOH . H 4 HOH B 16 179 37 HOH HOH . H 4 HOH B 17 180 38 HOH HOH . H 4 HOH B 18 181 39 HOH HOH . H 4 HOH B 19 182 41 HOH HOH . H 4 HOH B 20 183 42 HOH HOH . H 4 HOH B 21 184 44 HOH HOH . H 4 HOH B 22 185 46 HOH HOH . H 4 HOH B 23 186 49 HOH HOH . H 4 HOH B 24 187 51 HOH HOH . H 4 HOH B 25 188 53 HOH HOH . H 4 HOH B 26 189 56 HOH HOH . H 4 HOH B 27 190 59 HOH HOH . H 4 HOH B 28 191 61 HOH HOH . H 4 HOH B 29 192 63 HOH HOH . H 4 HOH B 30 193 66 HOH HOH . H 4 HOH B 31 194 67 HOH HOH . H 4 HOH B 32 195 70 HOH HOH . H 4 HOH B 33 196 71 HOH HOH . H 4 HOH B 34 197 73 HOH HOH . H 4 HOH B 35 198 74 HOH HOH . H 4 HOH B 36 199 76 HOH HOH . H 4 HOH B 37 200 78 HOH HOH . H 4 HOH B 38 201 81 HOH HOH . H 4 HOH B 39 202 83 HOH HOH . H 4 HOH B 40 203 84 HOH HOH . H 4 HOH B 41 204 86 HOH HOH . H 4 HOH B 42 205 89 HOH HOH . H 4 HOH B 43 206 90 HOH HOH . H 4 HOH B 44 208 91 HOH HOH . H 4 HOH B 45 209 92 HOH HOH . H 4 HOH B 46 210 94 HOH HOH . H 4 HOH B 47 211 97 HOH HOH . H 4 HOH B 48 212 98 HOH HOH . H 4 HOH B 49 213 100 HOH HOH . H 4 HOH B 50 214 101 HOH HOH . H 4 HOH B 51 215 103 HOH HOH . H 4 HOH B 52 216 106 HOH HOH . H 4 HOH B 53 217 107 HOH HOH . H 4 HOH B 54 218 109 HOH HOH . H 4 HOH B 55 219 110 HOH HOH . H 4 HOH B 56 220 114 HOH HOH . H 4 HOH B 57 221 119 HOH HOH . H 4 HOH B 58 222 123 HOH HOH . H 4 HOH B 59 223 126 HOH HOH . H 4 HOH B 60 224 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7DR . . . F 3 14.16 9.523 -8.407 1 26.96 ? N1 7DR 163 B 1 HETATM 2 C C2 7DR . . . F 3 15.028 9.432 -7.386 1 26.23 ? C2 7DR 163 B 1 HETATM 3 N N3 7DR . . . F 3 14.589 9.352 -6.126 1 25.35 ? N3 7DR 163 B 1 HETATM 4 C C4 7DR . . . F 3 13.272 9.351 -5.857 1 27.68 ? C4 7DR 163 B 1 HETATM 5 C C5 7DR . . . F 3 12.353 9.427 -6.904 1 28.31 ? C5 7DR 163 B 1 HETATM 6 C C6 7DR . . . F 3 12.833 9.517 -8.21 1 27.12 ? C6 7DR 163 B 1 HETATM 7 C CAA 7DR . . . F 3 12.841 7.758 -4.029 1 30.16 ? CAA 7DR 163 B 1 HETATM 8 C CAB 7DR . . . F 3 4.968 8.891 -1.962 1 42.54 ? CAB 7DR 163 B 1 HETATM 9 N NAC 7DR . . . F 3 16.336 9.43 -7.63 1 25.76 ? NAC 7DR 163 B 1 HETATM 10 N NAD 7DR . . . F 3 12.026 9.596 -9.269 1 27.02 ? NAD 7DR 163 B 1 HETATM 11 C CAE 7DR . . . F 3 9.764 9.401 -6.253 1 32.68 ? CAE 7DR 163 B 1 HETATM 12 C CAF 7DR . . . F 3 10.956 9.414 -6.56 1 29.99 ? CAF 7DR 163 B 1 HETATM 13 C CAG 7DR . . . F 3 10.071 15.828 -2.426 1 43.99 ? CAG 7DR 163 B 1 HETATM 14 C CAH 7DR . . . F 3 10.051 15.302 -3.717 1 42.78 ? CAH 7DR 163 B 1 HETATM 15 C CAI 7DR . . . F 3 9.522 15.095 -1.368 1 44.14 ? CAI 7DR 163 B 1 HETATM 16 C CAJ 7DR . . . F 3 9.475 14.051 -3.944 1 41.66 ? CAJ 7DR 163 B 1 HETATM 17 C CAK 7DR . . . F 3 8.952 13.837 -1.599 1 42.78 ? CAK 7DR 163 B 1 HETATM 18 C CAL 7DR . . . F 3 7.116 9.589 -3.644 1 37.99 ? CAL 7DR 163 B 1 HETATM 19 C CAM 7DR . . . F 3 8.62 11.365 -4.321 1 38.68 ? CAM 7DR 163 B 1 HETATM 20 C CAN 7DR . . . F 3 7.446 11.519 -2.223 1 39.16 ? CAN 7DR 163 B 1 HETATM 21 C CAO 7DR . . . F 3 12.855 9.243 -4.393 1 27.59 ? CAO 7DR 163 B 1 HETATM 22 C CAP 7DR . . . F 3 8.337 9.383 -5.875 1 35.08 ? CAP 7DR 163 B 1 HETATM 23 O OAS 7DR . . . F 3 5.969 9.823 -1.503 1 41.56 ? OAS 7DR 163 B 1 HETATM 24 C CAU 7DR . . . F 3 8.019 10.13 -4.573 1 37.25 ? CAU 7DR 163 B 1 HETATM 25 C CAW 7DR . . . F 3 6.829 10.291 -2.463 1 39.4 ? CAW 7DR 163 B 1 HETATM 26 C CAX 7DR . . . F 3 8.931 13.307 -2.892 1 41.35 ? CAX 7DR 163 B 1 HETATM 27 C CAY 7DR . . . F 3 8.345 12.062 -3.141 1 39.89 ? CAY 7DR 163 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #