data_3SAI # _model_server_result.job_id GHalUWvCiY1LCUMVcgvUZw _model_server_result.datetime_utc '2024-11-14 04:41:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":163}' # _entry.id 3SAI # _exptl.entry_id 3SAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-{3-[3-methoxy-5-(pyridin-4-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SAI _cell.length_a 77.88 _cell.length_b 77.88 _cell.length_c 67.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 77 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # _chem_comp.formula 'C21 H21 N5 O' _chem_comp.formula_weight 359.424 _chem_comp.id 9DR _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-{3-[3-methoxy-5-(pyridin-4-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 9DR doub 1 n y C6 N1 9DR sing 2 n y N3 C2 9DR sing 3 n y C2 NAC 9DR sing 4 n n C4 N3 9DR doub 5 n y CAN C4 9DR sing 6 n n C4 C5 9DR sing 7 n y CAF C5 9DR sing 8 n n C5 C6 9DR doub 9 n y C6 NAD 9DR sing 10 n n CAA CAN 9DR sing 11 n n CAA HAA 9DR sing 12 n n CAA HAAA 9DR sing 13 n n CAA HAAB 9DR sing 14 n n OAS CAB 9DR sing 15 n n CAB HAB 9DR sing 16 n n CAB HABA 9DR sing 17 n n CAB HABB 9DR sing 18 n n NAC HNAC 9DR sing 19 n n NAC HNAA 9DR sing 20 n n NAD HNAD 9DR sing 21 n n NAD HNAB 9DR sing 22 n n CAO CAE 9DR sing 23 n n CAE CAF 9DR trip 24 n n CAG CAI 9DR doub 25 n y CAG NAP 9DR sing 26 n y CAG HAG 9DR sing 27 n n NAP CAH 9DR doub 28 n y CAH CAJ 9DR sing 29 n y CAH HAH 9DR sing 30 n n CAI CAX 9DR sing 31 n y CAI HAI 9DR sing 32 n n CAX CAJ 9DR doub 33 n y CAJ HAJ 9DR sing 34 n n CAW CAK 9DR doub 35 n y CAK CAU 9DR sing 36 n y CAK HAK 9DR sing 37 n n CAY CAL 9DR sing 38 n y CAL CAU 9DR doub 39 n y CAL HAL 9DR sing 40 n n CAM CAW 9DR sing 41 n y CAM CAY 9DR doub 42 n y CAM HAM 9DR sing 43 n n CAN HAN 9DR sing 44 n n CAN HANA 9DR sing 45 n n CAU CAO 9DR sing 46 n n CAO HAO 9DR sing 47 n n CAO HAOA 9DR sing 48 n n OAS CAW 9DR sing 49 n n CAX CAY 9DR sing 50 n n # _atom_sites.entry_id 3SAI _atom_sites.fract_transf_matrix[1][1] 0.01284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 207 207 NAP NAP . D 3 9DR A 1 163 1 9DR DRG . E 4 PEG A 1 164 1 PEG PEG . F 4 PEG A 1 165 1 PEG PEG . G 5 NI A 1 166 1 NI NI . H 4 PEG A 1 167 1 PEG PEG . I 2 NAP B 1 207 207 NAP NAP . J 3 9DR B 1 163 1 9DR DRG . K 4 PEG B 1 164 1 PEG PEG . L 6 HOH A 1 168 168 HOH HOH . L 6 HOH A 2 169 1 HOH HOH . L 6 HOH A 3 170 4 HOH HOH . L 6 HOH A 4 171 5 HOH HOH . L 6 HOH A 5 172 172 HOH HOH . L 6 HOH A 6 173 6 HOH HOH . L 6 HOH A 7 174 7 HOH HOH . L 6 HOH A 8 175 175 HOH HOH . L 6 HOH A 9 176 8 HOH HOH . L 6 HOH A 10 177 12 HOH HOH . L 6 HOH A 11 178 178 HOH HOH . L 6 HOH A 12 179 15 HOH HOH . L 6 HOH A 13 180 16 HOH HOH . L 6 HOH A 14 181 18 HOH HOH . L 6 HOH A 15 182 20 HOH HOH . L 6 HOH A 16 183 21 HOH HOH . L 6 HOH A 17 184 25 HOH HOH . L 6 HOH A 18 185 185 HOH HOH . L 6 HOH A 19 186 27 HOH HOH . L 6 HOH A 20 187 187 HOH HOH . L 6 HOH A 21 188 29 HOH HOH . L 6 HOH A 22 189 30 HOH HOH . L 6 HOH A 23 190 190 HOH HOH . L 6 HOH A 24 191 33 HOH HOH . L 6 HOH A 25 192 37 HOH HOH . L 6 HOH A 26 193 39 HOH HOH . L 6 HOH A 27 194 42 HOH HOH . L 6 HOH A 28 195 43 HOH HOH . L 6 HOH A 29 196 44 HOH HOH . L 6 HOH A 30 197 47 HOH HOH . L 6 HOH A 31 198 56 HOH HOH . L 6 HOH A 32 199 199 HOH HOH . L 6 HOH A 33 200 60 HOH HOH . L 6 HOH A 34 201 61 HOH HOH . L 6 HOH A 35 202 202 HOH HOH . L 6 HOH A 36 203 62 HOH HOH . L 6 HOH A 37 204 204 HOH HOH . L 6 HOH A 38 205 205 HOH HOH . L 6 HOH A 39 206 66 HOH HOH . L 6 HOH A 40 208 67 HOH HOH . L 6 HOH A 41 209 72 HOH HOH . L 6 HOH A 42 210 210 HOH HOH . L 6 HOH A 43 211 74 HOH HOH . L 6 HOH A 44 212 75 HOH HOH . L 6 HOH A 45 213 76 HOH HOH . L 6 HOH A 46 214 79 HOH HOH . L 6 HOH A 47 215 215 HOH HOH . L 6 HOH A 48 216 80 HOH HOH . L 6 HOH A 49 217 82 HOH HOH . L 6 HOH A 50 218 218 HOH HOH . L 6 HOH A 51 219 83 HOH HOH . L 6 HOH A 52 220 88 HOH HOH . L 6 HOH A 53 221 93 HOH HOH . L 6 HOH A 54 222 94 HOH HOH . L 6 HOH A 55 223 223 HOH HOH . L 6 HOH A 56 224 224 HOH HOH . L 6 HOH A 57 225 96 HOH HOH . L 6 HOH A 58 226 99 HOH HOH . L 6 HOH A 59 227 227 HOH HOH . L 6 HOH A 60 228 101 HOH HOH . L 6 HOH A 61 229 102 HOH HOH . L 6 HOH A 62 230 230 HOH HOH . L 6 HOH A 63 231 231 HOH HOH . L 6 HOH A 64 232 232 HOH HOH . L 6 HOH A 65 233 233 HOH HOH . L 6 HOH A 66 234 234 HOH HOH . L 6 HOH A 67 235 104 HOH HOH . L 6 HOH A 68 236 106 HOH HOH . L 6 HOH A 69 237 107 HOH HOH . L 6 HOH A 70 238 109 HOH HOH . L 6 HOH A 71 239 110 HOH HOH . L 6 HOH A 72 240 111 HOH HOH . L 6 HOH A 73 241 116 HOH HOH . L 6 HOH A 74 242 242 HOH HOH . L 6 HOH A 75 243 243 HOH HOH . L 6 HOH A 76 244 119 HOH HOH . L 6 HOH A 77 245 120 HOH HOH . L 6 HOH A 78 246 121 HOH HOH . L 6 HOH A 79 247 247 HOH HOH . L 6 HOH A 80 248 123 HOH HOH . L 6 HOH A 81 249 124 HOH HOH . L 6 HOH A 82 250 125 HOH HOH . L 6 HOH A 83 251 127 HOH HOH . L 6 HOH A 84 252 252 HOH HOH . L 6 HOH A 85 253 128 HOH HOH . L 6 HOH A 86 254 129 HOH HOH . L 6 HOH A 87 255 134 HOH HOH . L 6 HOH A 88 256 256 HOH HOH . L 6 HOH A 89 257 139 HOH HOH . L 6 HOH A 90 258 258 HOH HOH . L 6 HOH A 91 259 147 HOH HOH . L 6 HOH A 92 260 152 HOH HOH . L 6 HOH A 93 261 153 HOH HOH . L 6 HOH A 94 262 262 HOH HOH . L 6 HOH A 95 263 155 HOH HOH . L 6 HOH A 96 264 157 HOH HOH . L 6 HOH A 97 265 265 HOH HOH . L 6 HOH A 98 266 266 HOH HOH . L 6 HOH A 99 267 160 HOH HOH . L 6 HOH A 100 268 268 HOH HOH . L 6 HOH A 101 269 165 HOH HOH . L 6 HOH A 102 270 166 HOH HOH . L 6 HOH A 103 272 272 HOH HOH . L 6 HOH A 104 273 273 HOH HOH . L 6 HOH A 105 274 274 HOH HOH . L 6 HOH A 106 276 276 HOH HOH . L 6 HOH A 107 278 278 HOH HOH . L 6 HOH A 108 279 279 HOH HOH . L 6 HOH A 109 280 280 HOH HOH . L 6 HOH A 110 281 281 HOH HOH . L 6 HOH A 111 284 284 HOH HOH . L 6 HOH A 112 285 285 HOH HOH . L 6 HOH A 113 287 287 HOH HOH . L 6 HOH A 114 292 292 HOH HOH . L 6 HOH A 115 302 302 HOH HOH . L 6 HOH A 116 311 311 HOH HOH . L 6 HOH A 117 314 314 HOH HOH . L 6 HOH A 118 315 315 HOH HOH . L 6 HOH A 119 324 324 HOH HOH . L 6 HOH A 120 329 329 HOH HOH . M 6 HOH B 1 165 3 HOH HOH . M 6 HOH B 2 166 9 HOH HOH . M 6 HOH B 3 167 167 HOH HOH . M 6 HOH B 4 168 10 HOH HOH . M 6 HOH B 5 169 169 HOH HOH . M 6 HOH B 6 170 11 HOH HOH . M 6 HOH B 7 171 171 HOH HOH . M 6 HOH B 8 172 13 HOH HOH . M 6 HOH B 9 173 173 HOH HOH . M 6 HOH B 10 174 174 HOH HOH . M 6 HOH B 11 175 14 HOH HOH . M 6 HOH B 12 176 176 HOH HOH . M 6 HOH B 13 177 177 HOH HOH . M 6 HOH B 14 178 17 HOH HOH . M 6 HOH B 15 179 19 HOH HOH . M 6 HOH B 16 180 180 HOH HOH . M 6 HOH B 17 181 22 HOH HOH . M 6 HOH B 18 182 23 HOH HOH . M 6 HOH B 19 183 24 HOH HOH . M 6 HOH B 20 184 184 HOH HOH . M 6 HOH B 21 185 26 HOH HOH . M 6 HOH B 22 186 28 HOH HOH . M 6 HOH B 23 187 31 HOH HOH . M 6 HOH B 24 188 34 HOH HOH . M 6 HOH B 25 189 35 HOH HOH . M 6 HOH B 26 190 36 HOH HOH . M 6 HOH B 27 191 191 HOH HOH . M 6 HOH B 28 192 45 HOH HOH . M 6 HOH B 29 193 193 HOH HOH . M 6 HOH B 30 194 194 HOH HOH . M 6 HOH B 31 195 195 HOH HOH . M 6 HOH B 32 196 46 HOH HOH . M 6 HOH B 33 197 48 HOH HOH . M 6 HOH B 34 198 49 HOH HOH . M 6 HOH B 35 199 50 HOH HOH . M 6 HOH B 36 200 200 HOH HOH . M 6 HOH B 37 201 201 HOH HOH . M 6 HOH B 38 202 52 HOH HOH . M 6 HOH B 39 203 53 HOH HOH . M 6 HOH B 40 204 54 HOH HOH . M 6 HOH B 41 205 55 HOH HOH . M 6 HOH B 42 206 206 HOH HOH . M 6 HOH B 43 208 208 HOH HOH . M 6 HOH B 44 209 59 HOH HOH . M 6 HOH B 45 210 63 HOH HOH . M 6 HOH B 46 211 64 HOH HOH . M 6 HOH B 47 212 65 HOH HOH . M 6 HOH B 48 213 68 HOH HOH . M 6 HOH B 49 214 214 HOH HOH . M 6 HOH B 50 215 70 HOH HOH . M 6 HOH B 51 216 216 HOH HOH . M 6 HOH B 52 217 73 HOH HOH . M 6 HOH B 53 218 77 HOH HOH . M 6 HOH B 54 219 78 HOH HOH . M 6 HOH B 55 220 220 HOH HOH . M 6 HOH B 56 221 85 HOH HOH . M 6 HOH B 57 222 222 HOH HOH . M 6 HOH B 58 223 87 HOH HOH . M 6 HOH B 59 224 92 HOH HOH . M 6 HOH B 60 225 225 HOH HOH . M 6 HOH B 61 226 95 HOH HOH . M 6 HOH B 62 227 97 HOH HOH . M 6 HOH B 63 228 98 HOH HOH . M 6 HOH B 64 229 103 HOH HOH . M 6 HOH B 65 230 112 HOH HOH . M 6 HOH B 66 231 122 HOH HOH . M 6 HOH B 67 232 132 HOH HOH . M 6 HOH B 68 233 135 HOH HOH . M 6 HOH B 69 234 140 HOH HOH . M 6 HOH B 70 235 235 HOH HOH . M 6 HOH B 71 236 236 HOH HOH . M 6 HOH B 72 237 142 HOH HOH . M 6 HOH B 73 238 238 HOH HOH . M 6 HOH B 74 239 239 HOH HOH . M 6 HOH B 75 240 240 HOH HOH . M 6 HOH B 76 241 145 HOH HOH . M 6 HOH B 77 242 146 HOH HOH . M 6 HOH B 78 243 149 HOH HOH . M 6 HOH B 79 244 151 HOH HOH . M 6 HOH B 80 245 245 HOH HOH . M 6 HOH B 81 246 159 HOH HOH . M 6 HOH B 82 247 207 HOH HOH . M 6 HOH B 83 250 250 HOH HOH . M 6 HOH B 84 251 251 HOH HOH . M 6 HOH B 85 253 253 HOH HOH . M 6 HOH B 86 254 254 HOH HOH . M 6 HOH B 87 255 255 HOH HOH . M 6 HOH B 88 261 261 HOH HOH . M 6 HOH B 89 264 264 HOH HOH . M 6 HOH B 90 269 269 HOH HOH . M 6 HOH B 91 270 270 HOH HOH . M 6 HOH B 92 275 275 HOH HOH . M 6 HOH B 93 277 277 HOH HOH . M 6 HOH B 94 282 282 HOH HOH . M 6 HOH B 95 283 283 HOH HOH . M 6 HOH B 96 288 288 HOH HOH . M 6 HOH B 97 289 289 HOH HOH . M 6 HOH B 98 291 291 HOH HOH . M 6 HOH B 99 299 299 HOH HOH . M 6 HOH B 100 301 301 HOH HOH . M 6 HOH B 101 317 317 HOH HOH . M 6 HOH B 102 320 320 HOH HOH . M 6 HOH B 103 321 321 HOH HOH . M 6 HOH B 104 322 322 HOH HOH . M 6 HOH B 105 325 325 HOH HOH . M 6 HOH B 106 326 326 HOH HOH . M 6 HOH B 107 331 331 HOH HOH . M 6 HOH B 108 334 334 HOH HOH . M 6 HOH B 109 335 335 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 9DR . . . D 3 42.413 -22.094 0.106 1 18.78 ? N1 9DR 163 A 1 HETATM 2 C C2 9DR . . . D 3 41.924 -21.372 -0.914 1 18.58 ? C2 9DR 163 A 1 HETATM 3 N N3 9DR . . . D 3 41.919 -21.84 -2.17 1 19.5 ? N3 9DR 163 A 1 HETATM 4 C C4 9DR . . . D 3 42.39 -23.056 -2.47 1 21.14 ? C4 9DR 163 A 1 HETATM 5 C C5 9DR . . . D 3 42.899 -23.832 -1.431 1 21.64 ? C5 9DR 163 A 1 HETATM 6 C C6 9DR . . . D 3 42.895 -23.33 -0.13 1 21.17 ? C6 9DR 163 A 1 HETATM 7 C CAA 9DR . . . D 3 43.59 -23.055 -4.681 1 21.86 ? CAA 9DR 163 A 1 HETATM 8 C CAB 9DR . . . D 3 44.632 -30.869 -6.019 1 34.74 ? CAB 9DR 163 A 1 HETATM 9 N NAC 9DR . . . D 3 41.438 -20.166 -0.713 1 17.36 ? NAC 9DR 163 A 1 HETATM 10 N NAD 9DR . . . D 3 43.37 -24.072 0.875 1 21.24 ? NAD 9DR 163 A 1 HETATM 11 C CAE 9DR . . . D 3 43.844 -26.264 -1.968 1 28.22 ? CAE 9DR 163 A 1 HETATM 12 C CAF 9DR . . . D 3 43.41 -25.139 -1.709 1 24.21 ? CAF 9DR 163 A 1 HETATM 13 C CAG 9DR . . . D 3 49.246 -24.709 -6.958 1 39.74 ? CAG 9DR 163 A 1 HETATM 14 C CAH 9DR . . . D 3 49.43 -24.095 -4.721 1 39.03 ? CAH 9DR 163 A 1 HETATM 15 C CAI 9DR . . . D 3 48.288 -25.674 -6.645 1 38.74 ? CAI 9DR 163 A 1 HETATM 16 C CAJ 9DR . . . D 3 48.484 -25.046 -4.338 1 37.83 ? CAJ 9DR 163 A 1 HETATM 17 C CAK 9DR . . . D 3 45.085 -28.792 -4.347 1 33.71 ? CAK 9DR 163 A 1 HETATM 18 C CAL 9DR . . . D 3 46.171 -26.705 -3.815 1 32.99 ? CAL 9DR 163 A 1 HETATM 19 C CAM 9DR . . . D 3 46.783 -27.925 -5.812 1 34.46 ? CAM 9DR 163 A 1 HETATM 20 C CAN 9DR . . . D 3 42.326 -23.484 -3.94 1 20.78 ? CAN 9DR 163 A 1 HETATM 21 C CAO 9DR . . . D 3 44.373 -27.61 -2.239 1 29.77 ? CAO 9DR 163 A 1 HETATM 22 N NAP 9DR . . . D 3 49.782 -23.96 -5.997 1 40.34 ? NAP 9DR 163 A 1 HETATM 23 O OAS 9DR . . . D 3 45.728 -29.988 -6.363 1 35.72 ? OAS 9DR 163 A 1 HETATM 24 C CAU 9DR . . . D 3 45.234 -27.689 -3.504 1 32.07 ? CAU 9DR 163 A 1 HETATM 25 C CAW 9DR . . . D 3 45.856 -28.918 -5.511 1 34.86 ? CAW 9DR 163 A 1 HETATM 26 C CAX 9DR . . . D 3 47.895 -25.85 -5.315 1 36.94 ? CAX 9DR 163 A 1 HETATM 27 C CAY 9DR . . . D 3 46.945 -26.82 -4.977 1 34.96 ? CAY 9DR 163 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #