data_3SAO # _model_server_result.job_id z8f7FqdJs6yNcsqt9YaIcw _model_server_result.datetime_utc '2024-11-07 22:49:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":161}' # _entry.id 3SAO # _exptl.entry_id 3SAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SAO _cell.length_a 37.95 _cell.length_b 68.89 _cell.length_c 117.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,H 1 1 B,D,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 58 1_555 A SG CYS 151 A CYS 151 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 58 A CYS 58 1_555 A SG CYS 151 A CYS 151 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 58 B CYS 58 1_555 B SG CYS 151 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 E O3 DBH . B DBH 162 1_555 F FE FE . B FE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc2 E O6 DBH . B DBH 162 1_555 F FE FE . B FE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'C17 H35 O7 P' _chem_comp.formula_weight 382.429 _chem_comp.id NKN _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '14:0 LPA;myristoyl lysophosphatidic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA PAC NKN sing 267 n n OAB PAC NKN sing 268 n n PAC OAD NKN doub 269 n n PAC OAF NKN sing 270 n n OAE CAK NKN doub 271 n n OAF CAG NKN sing 272 n n CAG CAH NKN sing 273 n n CAH CAI NKN sing 274 n n CAH OAY NKN sing 275 n n CAI OAJ NKN sing 276 n n OAJ CAK NKN sing 277 n n CAK CAL NKN sing 278 n n CAL CAM NKN sing 279 n n CAM CAN NKN sing 280 n n CAN CAO NKN sing 281 n n CAO CAP NKN sing 282 n n CAP CAQ NKN sing 283 n n CAQ CAR NKN sing 284 n n CAR CAS NKN sing 285 n n CAS CAT NKN sing 286 n n CAT CAU NKN sing 287 n n CAU CAV NKN sing 288 n n CAV CAW NKN sing 289 n n CAW CAX NKN sing 290 n n CAG HAG NKN sing 291 n n CAG HAGA NKN sing 292 n n CAH HAH NKN sing 293 n n CAI HAI NKN sing 294 n n CAI HAIA NKN sing 295 n n CAL HAL NKN sing 296 n n CAL HALA NKN sing 297 n n CAM HAM NKN sing 298 n n CAM HAMA NKN sing 299 n n CAN HAN NKN sing 300 n n CAN HANA NKN sing 301 n n CAO HAO NKN sing 302 n n CAO HAOA NKN sing 303 n n CAP HAP NKN sing 304 n n CAP HAPA NKN sing 305 n n CAQ HAQ NKN sing 306 n n CAQ HAQA NKN sing 307 n n CAR HAR NKN sing 308 n n CAR HARA NKN sing 309 n n CAS HAS NKN sing 310 n n CAS HASA NKN sing 311 n n CAT HAT NKN sing 312 n n CAT HATA NKN sing 313 n n CAU HAU NKN sing 314 n n CAU HAUA NKN sing 315 n n CAV HAV NKN sing 316 n n CAV HAVA NKN sing 317 n n CAW HAW NKN sing 318 n n CAW HAWA NKN sing 319 n n CAX HAX NKN sing 320 n n CAX HAXA NKN sing 321 n n CAX HAXB NKN sing 322 n n OAY HOAY NKN sing 323 n n OAA HOAA NKN sing 324 n n OAB HOAB NKN sing 325 n n # _atom_sites.entry_id 3SAO _atom_sites.fract_transf_matrix[1][1] 0.02635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NKN A 1 161 1 NKN NKN . D 2 NKN B 1 161 1 NKN NKN . E 3 DBH B 1 162 1 DBH DBH . F 4 FE B 1 163 1 FE FE . G 5 GOL B 1 164 1 GOL GOL . H 6 HOH A 1 162 3 HOH HOH . H 6 HOH A 2 163 6 HOH HOH . H 6 HOH A 3 164 7 HOH HOH . H 6 HOH A 4 165 11 HOH HOH . H 6 HOH A 5 166 13 HOH HOH . H 6 HOH A 6 167 14 HOH HOH . H 6 HOH A 7 168 16 HOH HOH . H 6 HOH A 8 169 19 HOH HOH . H 6 HOH A 9 170 20 HOH HOH . H 6 HOH A 10 171 21 HOH HOH . H 6 HOH A 11 172 22 HOH HOH . H 6 HOH A 12 173 27 HOH HOH . H 6 HOH A 13 174 28 HOH HOH . H 6 HOH A 14 175 29 HOH HOH . H 6 HOH A 15 176 30 HOH HOH . H 6 HOH A 16 177 32 HOH HOH . H 6 HOH A 17 178 34 HOH HOH . H 6 HOH A 18 179 36 HOH HOH . H 6 HOH A 19 180 39 HOH HOH . H 6 HOH A 20 181 40 HOH HOH . H 6 HOH A 21 182 42 HOH HOH . H 6 HOH A 22 183 53 HOH HOH . H 6 HOH A 23 184 54 HOH HOH . H 6 HOH A 24 185 55 HOH HOH . H 6 HOH A 25 186 61 HOH HOH . H 6 HOH A 26 187 64 HOH HOH . H 6 HOH A 27 188 65 HOH HOH . H 6 HOH A 28 189 66 HOH HOH . H 6 HOH A 29 190 67 HOH HOH . H 6 HOH A 30 191 68 HOH HOH . H 6 HOH A 31 192 78 HOH HOH . H 6 HOH A 32 193 80 HOH HOH . H 6 HOH A 33 194 81 HOH HOH . H 6 HOH A 34 195 82 HOH HOH . H 6 HOH A 35 196 83 HOH HOH . H 6 HOH A 36 197 84 HOH HOH . H 6 HOH A 37 198 85 HOH HOH . H 6 HOH A 38 199 88 HOH HOH . H 6 HOH A 39 200 91 HOH HOH . H 6 HOH A 40 201 92 HOH HOH . H 6 HOH A 41 202 93 HOH HOH . H 6 HOH A 42 203 94 HOH HOH . H 6 HOH A 43 204 95 HOH HOH . H 6 HOH A 44 205 96 HOH HOH . H 6 HOH A 45 206 98 HOH HOH . H 6 HOH A 46 207 99 HOH HOH . H 6 HOH A 47 208 100 HOH HOH . H 6 HOH A 48 209 102 HOH HOH . H 6 HOH A 49 210 104 HOH HOH . H 6 HOH A 50 211 105 HOH HOH . H 6 HOH A 51 212 106 HOH HOH . H 6 HOH A 52 213 110 HOH HOH . H 6 HOH A 53 214 111 HOH HOH . H 6 HOH A 54 215 112 HOH HOH . H 6 HOH A 55 216 118 HOH HOH . H 6 HOH A 56 217 119 HOH HOH . H 6 HOH A 57 218 120 HOH HOH . H 6 HOH A 58 219 123 HOH HOH . H 6 HOH A 59 220 124 HOH HOH . H 6 HOH A 60 221 126 HOH HOH . H 6 HOH A 61 222 127 HOH HOH . H 6 HOH A 62 223 129 HOH HOH . H 6 HOH A 63 224 131 HOH HOH . H 6 HOH A 64 225 133 HOH HOH . I 6 HOH B 1 165 1 HOH HOH . I 6 HOH B 2 166 2 HOH HOH . I 6 HOH B 3 167 4 HOH HOH . I 6 HOH B 4 168 5 HOH HOH . I 6 HOH B 5 169 8 HOH HOH . I 6 HOH B 6 170 9 HOH HOH . I 6 HOH B 7 171 10 HOH HOH . I 6 HOH B 8 172 12 HOH HOH . I 6 HOH B 9 173 15 HOH HOH . I 6 HOH B 10 174 17 HOH HOH . I 6 HOH B 11 175 18 HOH HOH . I 6 HOH B 12 176 23 HOH HOH . I 6 HOH B 13 177 24 HOH HOH . I 6 HOH B 14 178 25 HOH HOH . I 6 HOH B 15 179 26 HOH HOH . I 6 HOH B 16 180 31 HOH HOH . I 6 HOH B 17 181 33 HOH HOH . I 6 HOH B 18 182 35 HOH HOH . I 6 HOH B 19 183 37 HOH HOH . I 6 HOH B 20 184 38 HOH HOH . I 6 HOH B 21 185 41 HOH HOH . I 6 HOH B 22 186 43 HOH HOH . I 6 HOH B 23 187 44 HOH HOH . I 6 HOH B 24 188 45 HOH HOH . I 6 HOH B 25 189 46 HOH HOH . I 6 HOH B 26 190 47 HOH HOH . I 6 HOH B 27 191 48 HOH HOH . I 6 HOH B 28 192 49 HOH HOH . I 6 HOH B 29 193 50 HOH HOH . I 6 HOH B 30 194 51 HOH HOH . I 6 HOH B 31 195 52 HOH HOH . I 6 HOH B 32 196 56 HOH HOH . I 6 HOH B 33 197 57 HOH HOH . I 6 HOH B 34 198 58 HOH HOH . I 6 HOH B 35 199 59 HOH HOH . I 6 HOH B 36 200 60 HOH HOH . I 6 HOH B 37 201 62 HOH HOH . I 6 HOH B 38 202 63 HOH HOH . I 6 HOH B 39 203 69 HOH HOH . I 6 HOH B 40 204 70 HOH HOH . I 6 HOH B 41 205 71 HOH HOH . I 6 HOH B 42 206 72 HOH HOH . I 6 HOH B 43 207 73 HOH HOH . I 6 HOH B 44 208 74 HOH HOH . I 6 HOH B 45 209 75 HOH HOH . I 6 HOH B 46 210 76 HOH HOH . I 6 HOH B 47 211 77 HOH HOH . I 6 HOH B 48 212 79 HOH HOH . I 6 HOH B 49 213 86 HOH HOH . I 6 HOH B 50 214 87 HOH HOH . I 6 HOH B 51 215 89 HOH HOH . I 6 HOH B 52 216 90 HOH HOH . I 6 HOH B 53 217 97 HOH HOH . I 6 HOH B 54 218 101 HOH HOH . I 6 HOH B 55 219 103 HOH HOH . I 6 HOH B 56 220 107 HOH HOH . I 6 HOH B 57 221 108 HOH HOH . I 6 HOH B 58 222 109 HOH HOH . I 6 HOH B 59 223 113 HOH HOH . I 6 HOH B 60 224 114 HOH HOH . I 6 HOH B 61 225 115 HOH HOH . I 6 HOH B 62 226 116 HOH HOH . I 6 HOH B 63 227 117 HOH HOH . I 6 HOH B 64 228 121 HOH HOH . I 6 HOH B 65 229 122 HOH HOH . I 6 HOH B 66 230 125 HOH HOH . I 6 HOH B 67 231 128 HOH HOH . I 6 HOH B 68 232 130 HOH HOH . I 6 HOH B 69 233 132 HOH HOH . I 6 HOH B 70 234 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA NKN . . . D 2 -30.473 0.134 -51.213 1 43.1 ? OAA NKN 161 B 1 HETATM 2 O OAB NKN . . . D 2 -32.212 1.9 -51.57 1 48.6 ? OAB NKN 161 B 1 HETATM 3 P PAC NKN . . . D 2 -30.918 1.522 -50.909 1 41.93 ? PAC NKN 161 B 1 HETATM 4 O OAD NKN . . . D 2 -30.922 1.838 -49.474 1 50.78 ? OAD NKN 161 B 1 HETATM 5 O OAE NKN . . . D 2 -27.893 6.878 -55.066 1 81.31 ? OAE NKN 161 B 1 HETATM 6 O OAF NKN . . . D 2 -29.86 2.512 -51.583 1 47.43 ? OAF NKN 161 B 1 HETATM 7 C CAG NKN . . . D 2 -29.863 2.8 -52.952 1 52.35 ? CAG NKN 161 B 1 HETATM 8 C CAH NKN . . . D 2 -28.47 3.22 -53.397 1 61.58 ? CAH NKN 161 B 1 HETATM 9 C CAI NKN . . . D 2 -28.311 4.72 -53.424 1 69.51 ? CAI NKN 161 B 1 HETATM 10 O OAJ NKN . . . D 2 -27.04 4.996 -54.014 1 75.48 ? OAJ NKN 161 B 1 HETATM 11 C CAK NKN . . . D 2 -26.905 6.181 -54.85 1 78.02 ? CAK NKN 161 B 1 HETATM 12 C CAL NKN . . . D 2 -25.566 6.524 -55.446 1 74.21 ? CAL NKN 161 B 1 HETATM 13 C CAM NKN . . . D 2 -24.923 7.658 -54.669 1 73.72 ? CAM NKN 161 B 1 HETATM 14 C CAN NKN . . . D 2 -23.762 8.273 -55.445 1 71.4 ? CAN NKN 161 B 1 HETATM 15 C CAO NKN . . . D 2 -22.583 8.557 -54.513 1 74.48 ? CAO NKN 161 B 1 HETATM 16 O OAY NKN . . . D 2 -27.481 2.688 -52.521 1 70.26 ? OAY NKN 161 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #