data_3SB1 # _model_server_result.job_id OJuCm6zTKkjp0qXkdNWl1Q _model_server_result.datetime_utc '2024-10-18 20:23:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":137}' # _entry.id 3SB1 # _exptl.entry_id 3SB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.74 _cell.angle_gamma 90 _cell.entry_id 3SB1 _cell.length_a 83.306 _cell.length_b 39.291 _cell.length_c 65.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3SB1 _atom_sites.fract_transf_matrix[1][1] 0.012004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003157 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 137 1 GOL GOL . D 3 PGE A 1 138 2 PGE PGE . E 4 HOH A 1 139 139 HOH HOH . E 4 HOH A 2 140 140 HOH HOH . E 4 HOH A 3 141 141 HOH HOH . E 4 HOH A 4 142 142 HOH HOH . E 4 HOH A 5 143 2 HOH HOH . E 4 HOH A 6 144 6 HOH HOH . E 4 HOH A 7 145 8 HOH HOH . E 4 HOH A 8 146 146 HOH HOH . E 4 HOH A 9 147 11 HOH HOH . E 4 HOH A 10 148 12 HOH HOH . E 4 HOH A 11 149 13 HOH HOH . E 4 HOH A 12 150 14 HOH HOH . E 4 HOH A 13 151 15 HOH HOH . E 4 HOH A 14 152 17 HOH HOH . E 4 HOH A 15 153 18 HOH HOH . E 4 HOH A 16 154 154 HOH HOH . E 4 HOH A 17 155 20 HOH HOH . E 4 HOH A 18 156 21 HOH HOH . E 4 HOH A 19 157 157 HOH HOH . E 4 HOH A 20 158 158 HOH HOH . E 4 HOH A 21 159 23 HOH HOH . E 4 HOH A 22 160 160 HOH HOH . E 4 HOH A 23 161 161 HOH HOH . E 4 HOH A 24 162 25 HOH HOH . E 4 HOH A 25 163 163 HOH HOH . E 4 HOH A 26 164 27 HOH HOH . E 4 HOH A 27 165 28 HOH HOH . E 4 HOH A 28 166 29 HOH HOH . E 4 HOH A 29 167 30 HOH HOH . E 4 HOH A 30 168 32 HOH HOH . E 4 HOH A 31 169 33 HOH HOH . E 4 HOH A 32 170 35 HOH HOH . E 4 HOH A 33 171 36 HOH HOH . E 4 HOH A 34 172 37 HOH HOH . E 4 HOH A 35 173 38 HOH HOH . E 4 HOH A 36 174 39 HOH HOH . E 4 HOH A 37 175 40 HOH HOH . E 4 HOH A 38 176 45 HOH HOH . E 4 HOH A 39 177 46 HOH HOH . E 4 HOH A 40 178 47 HOH HOH . E 4 HOH A 41 179 48 HOH HOH . E 4 HOH A 42 180 49 HOH HOH . E 4 HOH A 43 181 50 HOH HOH . E 4 HOH A 44 182 52 HOH HOH . E 4 HOH A 45 183 53 HOH HOH . E 4 HOH A 46 184 55 HOH HOH . E 4 HOH A 47 185 57 HOH HOH . E 4 HOH A 48 186 58 HOH HOH . E 4 HOH A 49 187 62 HOH HOH . E 4 HOH A 50 188 63 HOH HOH . E 4 HOH A 51 189 64 HOH HOH . E 4 HOH A 52 190 65 HOH HOH . E 4 HOH A 53 191 66 HOH HOH . E 4 HOH A 54 192 67 HOH HOH . E 4 HOH A 55 193 68 HOH HOH . E 4 HOH A 56 194 74 HOH HOH . E 4 HOH A 57 195 75 HOH HOH . E 4 HOH A 58 196 77 HOH HOH . E 4 HOH A 59 197 78 HOH HOH . E 4 HOH A 60 198 79 HOH HOH . E 4 HOH A 61 199 83 HOH HOH . E 4 HOH A 62 200 89 HOH HOH . E 4 HOH A 63 201 90 HOH HOH . E 4 HOH A 64 202 91 HOH HOH . E 4 HOH A 65 203 94 HOH HOH . E 4 HOH A 66 204 99 HOH HOH . E 4 HOH A 67 205 102 HOH HOH . E 4 HOH A 68 206 104 HOH HOH . E 4 HOH A 69 207 108 HOH HOH . E 4 HOH A 70 208 109 HOH HOH . E 4 HOH A 71 209 110 HOH HOH . E 4 HOH A 72 210 112 HOH HOH . E 4 HOH A 73 211 114 HOH HOH . E 4 HOH A 74 212 115 HOH HOH . E 4 HOH A 75 213 118 HOH HOH . E 4 HOH A 76 214 121 HOH HOH . E 4 HOH A 77 215 122 HOH HOH . E 4 HOH A 78 216 123 HOH HOH . E 4 HOH A 79 217 124 HOH HOH . E 4 HOH A 80 218 131 HOH HOH . E 4 HOH A 81 219 133 HOH HOH . E 4 HOH A 82 220 136 HOH HOH . E 4 HOH A 83 221 137 HOH HOH . E 4 HOH A 84 222 138 HOH HOH . F 4 HOH B 1 137 1 HOH HOH . F 4 HOH B 2 138 3 HOH HOH . F 4 HOH B 3 139 4 HOH HOH . F 4 HOH B 4 140 5 HOH HOH . F 4 HOH B 5 141 7 HOH HOH . F 4 HOH B 6 142 9 HOH HOH . F 4 HOH B 7 143 143 HOH HOH . F 4 HOH B 8 144 144 HOH HOH . F 4 HOH B 9 145 145 HOH HOH . F 4 HOH B 10 146 10 HOH HOH . F 4 HOH B 11 147 147 HOH HOH . F 4 HOH B 12 148 148 HOH HOH . F 4 HOH B 13 149 149 HOH HOH . F 4 HOH B 14 150 150 HOH HOH . F 4 HOH B 15 151 151 HOH HOH . F 4 HOH B 16 152 152 HOH HOH . F 4 HOH B 17 153 153 HOH HOH . F 4 HOH B 18 154 16 HOH HOH . F 4 HOH B 19 155 155 HOH HOH . F 4 HOH B 20 156 156 HOH HOH . F 4 HOH B 21 157 19 HOH HOH . F 4 HOH B 22 158 22 HOH HOH . F 4 HOH B 23 159 159 HOH HOH . F 4 HOH B 24 160 24 HOH HOH . F 4 HOH B 25 161 26 HOH HOH . F 4 HOH B 26 162 162 HOH HOH . F 4 HOH B 27 163 31 HOH HOH . F 4 HOH B 28 164 34 HOH HOH . F 4 HOH B 29 165 41 HOH HOH . F 4 HOH B 30 166 42 HOH HOH . F 4 HOH B 31 167 43 HOH HOH . F 4 HOH B 32 168 44 HOH HOH . F 4 HOH B 33 169 51 HOH HOH . F 4 HOH B 34 170 54 HOH HOH . F 4 HOH B 35 171 56 HOH HOH . F 4 HOH B 36 172 59 HOH HOH . F 4 HOH B 37 173 60 HOH HOH . F 4 HOH B 38 174 61 HOH HOH . F 4 HOH B 39 175 69 HOH HOH . F 4 HOH B 40 176 70 HOH HOH . F 4 HOH B 41 177 71 HOH HOH . F 4 HOH B 42 178 72 HOH HOH . F 4 HOH B 43 179 73 HOH HOH . F 4 HOH B 44 180 76 HOH HOH . F 4 HOH B 45 181 80 HOH HOH . F 4 HOH B 46 182 81 HOH HOH . F 4 HOH B 47 183 82 HOH HOH . F 4 HOH B 48 184 84 HOH HOH . F 4 HOH B 49 185 85 HOH HOH . F 4 HOH B 50 186 86 HOH HOH . F 4 HOH B 51 187 87 HOH HOH . F 4 HOH B 52 188 88 HOH HOH . F 4 HOH B 53 189 92 HOH HOH . F 4 HOH B 54 190 93 HOH HOH . F 4 HOH B 55 191 96 HOH HOH . F 4 HOH B 56 192 97 HOH HOH . F 4 HOH B 57 193 98 HOH HOH . F 4 HOH B 58 194 100 HOH HOH . F 4 HOH B 59 195 101 HOH HOH . F 4 HOH B 60 196 103 HOH HOH . F 4 HOH B 61 197 105 HOH HOH . F 4 HOH B 62 198 106 HOH HOH . F 4 HOH B 63 199 107 HOH HOH . F 4 HOH B 64 200 111 HOH HOH . F 4 HOH B 65 201 113 HOH HOH . F 4 HOH B 66 202 116 HOH HOH . F 4 HOH B 67 203 117 HOH HOH . F 4 HOH B 68 204 119 HOH HOH . F 4 HOH B 69 205 120 HOH HOH . F 4 HOH B 70 206 125 HOH HOH . F 4 HOH B 71 207 126 HOH HOH . F 4 HOH B 72 208 127 HOH HOH . F 4 HOH B 73 209 128 HOH HOH . F 4 HOH B 74 210 129 HOH HOH . F 4 HOH B 75 211 130 HOH HOH . F 4 HOH B 76 212 132 HOH HOH . F 4 HOH B 77 213 134 HOH HOH . F 4 HOH B 78 214 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -6.761 11.684 19.909 1 40.79 ? C1 GOL 137 A 1 HETATM 2 O O1 GOL . . . C 2 -7.601 12.809 19.983 1 34.73 ? O1 GOL 137 A 1 HETATM 3 C C2 GOL . . . C 2 -6.48 11.24 21.325 1 44.7 ? C2 GOL 137 A 1 HETATM 4 O O2 GOL . . . C 2 -5.612 12.182 21.939 1 44.25 ? O2 GOL 137 A 1 HETATM 5 C C3 GOL . . . C 2 -5.896 9.843 21.328 1 47.28 ? C3 GOL 137 A 1 HETATM 6 O O3 GOL . . . C 2 -5.721 9.428 22.669 1 51.55 ? O3 GOL 137 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #