data_3SB5 # _model_server_result.job_id yPtxMXRvWkH3cSdS7qlOlQ _model_server_result.datetime_utc '2024-11-24 10:38:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":166}' # _entry.id 3SB5 # _exptl.entry_id 3SB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SB5 _cell.length_a 128.97 _cell.length_b 128.97 _cell.length_c 295.14 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA trimeric 3 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,L,JA 1 1,2,3 B,M,N,O,P,Q,R,S,T,U,KA 2 1,2,3 C,V,W,X,Y,Z,LA 3 1,2,3 D,AA,BA,CA,DA,EA,FA,GA,HA,IA,MA 4 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -64.485 111.691296 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -128.97 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 Q N N ? 4 U N N ? 4 DA N N ? 4 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 128 B CYS 125 1_555 F ZN ZN . B ZN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc2 A SG CYS 131 B CYS 128 1_555 E ZN ZN . B ZN 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc3 H MG MG . B MG 166 1_555 K O2 GOL . B GOL 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc4 I MG MG . B MG 167 1_555 JA O HOH . B HOH 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc5 B OG SER 120 A SER 117 1_555 U MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc6 B SG CYS 128 A CYS 125 1_555 M ZN ZN . A ZN 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 B SG CYS 131 A CYS 128 1_555 M ZN ZN . A ZN 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc8 B SG CYS 131 A CYS 128 1_555 N ZN ZN . A ZN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc9 C SG CYS 128 C CYS 125 1_555 V ZN ZN . C ZN 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc10 C SG CYS 131 C CYS 128 1_555 V ZN ZN . C ZN 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc11 C SG CYS 131 C CYS 128 1_555 W ZN ZN . C ZN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 D SG CYS 128 D CYS 125 1_555 AA ZN ZN . D ZN 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc13 D SG CYS 131 D CYS 128 1_555 BA ZN ZN . D ZN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc14 CA O3 GOL . D GOL 165 1_555 DA MG MG . D MG 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc15 FA MG MG . D MG 168 1_555 MA O HOH . D HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc16 FA MG MG . D MG 168 1_555 MA O HOH . D HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc17 FA MG MG . D MG 168 1_555 MA O HOH . D HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? metalc ? metalc18 FA MG MG . D MG 168 1_555 MA O HOH . D HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc19 FA MG MG . D MG 168 1_555 MA O HOH . D HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SB5 _atom_sites.fract_transf_matrix[1][1] 0.007754 _atom_sites.fract_transf_matrix[1][2] 0.004477 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN B 1 163 15 ZN ZN . F 2 ZN B 1 164 16 ZN ZN . G 3 CL B 1 165 1 CL CL . H 4 MG B 1 166 1 MG MG . I 4 MG B 1 167 1 MG MG . J 5 GOL B 1 168 1 GOL GOL . K 5 GOL B 1 169 3 GOL GOL . L 3 CL B 1 170 1 CL CL . M 2 ZN A 1 163 11 ZN ZN . N 2 ZN A 1 164 12 ZN ZN . O 5 GOL A 1 165 1 GOL GOL . P 3 CL A 1 166 1 CL CL . Q 4 MG A 1 167 1 MG MG . R 5 GOL A 1 168 1 GOL GOL . S 3 CL A 1 169 1 CL CL . T 5 GOL A 1 170 1 GOL GOL . U 4 MG A 1 171 1 MG MG . V 2 ZN C 1 163 17 ZN ZN . W 2 ZN C 1 164 18 ZN ZN . X 3 CL C 1 165 1 CL CL . Y 5 GOL C 1 166 2 GOL GOL . Z 3 CL C 1 167 1 CL CL . AA 2 ZN D 1 163 13 ZN ZN . BA 2 ZN D 1 164 14 ZN ZN . CA 5 GOL D 1 165 1 GOL GOL . DA 4 MG D 1 166 1 MG MG . EA 3 CL D 1 167 1 CL CL . FA 4 MG D 1 168 1 MG MG . GA 5 GOL D 1 169 1 GOL GOL . HA 5 GOL D 1 170 4 GOL GOL . IA 3 CL D 1 171 1 CL CL . JA 6 HOH B 1 171 7 HOH HOH . JA 6 HOH B 2 172 15 HOH HOH . JA 6 HOH B 3 173 22 HOH HOH . JA 6 HOH B 4 174 35 HOH HOH . JA 6 HOH B 5 175 45 HOH HOH . JA 6 HOH B 6 176 47 HOH HOH . JA 6 HOH B 7 177 50 HOH HOH . JA 6 HOH B 8 178 58 HOH HOH . JA 6 HOH B 9 179 68 HOH HOH . JA 6 HOH B 10 180 70 HOH HOH . JA 6 HOH B 11 181 74 HOH HOH . JA 6 HOH B 12 182 75 HOH HOH . JA 6 HOH B 13 183 83 HOH HOH . JA 6 HOH B 14 184 90 HOH HOH . JA 6 HOH B 15 185 92 HOH HOH . JA 6 HOH B 16 186 94 HOH HOH . JA 6 HOH B 17 187 101 HOH HOH . JA 6 HOH B 18 188 103 HOH HOH . JA 6 HOH B 19 189 121 HOH HOH . JA 6 HOH B 20 190 123 HOH HOH . JA 6 HOH B 21 191 127 HOH HOH . JA 6 HOH B 22 192 192 HOH HOH . JA 6 HOH B 23 193 131 HOH HOH . JA 6 HOH B 24 194 138 HOH HOH . JA 6 HOH B 25 195 142 HOH HOH . JA 6 HOH B 26 196 196 HOH HOH . JA 6 HOH B 27 197 150 HOH HOH . JA 6 HOH B 28 198 198 HOH HOH . JA 6 HOH B 29 199 152 HOH HOH . JA 6 HOH B 30 200 155 HOH HOH . JA 6 HOH B 31 201 160 HOH HOH . JA 6 HOH B 32 203 203 HOH HOH . JA 6 HOH B 33 206 206 HOH HOH . JA 6 HOH B 34 212 212 HOH HOH . JA 6 HOH B 35 214 214 HOH HOH . JA 6 HOH B 36 218 218 HOH HOH . JA 6 HOH B 37 221 221 HOH HOH . JA 6 HOH B 38 222 222 HOH HOH . JA 6 HOH B 39 223 223 HOH HOH . JA 6 HOH B 40 224 224 HOH HOH . KA 6 HOH A 1 172 8 HOH HOH . KA 6 HOH A 2 173 173 HOH HOH . KA 6 HOH A 3 174 11 HOH HOH . KA 6 HOH A 4 175 175 HOH HOH . KA 6 HOH A 5 176 12 HOH HOH . KA 6 HOH A 6 177 177 HOH HOH . KA 6 HOH A 7 178 14 HOH HOH . KA 6 HOH A 8 179 20 HOH HOH . KA 6 HOH A 9 180 24 HOH HOH . KA 6 HOH A 10 181 27 HOH HOH . KA 6 HOH A 11 182 29 HOH HOH . KA 6 HOH A 12 183 30 HOH HOH . KA 6 HOH A 13 184 184 HOH HOH . KA 6 HOH A 14 185 185 HOH HOH . KA 6 HOH A 15 186 186 HOH HOH . KA 6 HOH A 16 187 187 HOH HOH . KA 6 HOH A 17 188 188 HOH HOH . KA 6 HOH A 18 189 46 HOH HOH . KA 6 HOH A 19 190 51 HOH HOH . KA 6 HOH A 20 191 54 HOH HOH . KA 6 HOH A 21 192 60 HOH HOH . KA 6 HOH A 22 193 76 HOH HOH . KA 6 HOH A 23 194 84 HOH HOH . KA 6 HOH A 24 195 85 HOH HOH . KA 6 HOH A 25 196 89 HOH HOH . KA 6 HOH A 26 197 98 HOH HOH . KA 6 HOH A 27 198 106 HOH HOH . KA 6 HOH A 28 199 108 HOH HOH . KA 6 HOH A 29 200 111 HOH HOH . KA 6 HOH A 30 201 112 HOH HOH . KA 6 HOH A 31 202 114 HOH HOH . KA 6 HOH A 32 203 115 HOH HOH . KA 6 HOH A 33 204 130 HOH HOH . KA 6 HOH A 34 205 205 HOH HOH . KA 6 HOH A 35 206 137 HOH HOH . KA 6 HOH A 36 207 163 HOH HOH . KA 6 HOH A 37 208 208 HOH HOH . KA 6 HOH A 38 210 210 HOH HOH . KA 6 HOH A 39 213 213 HOH HOH . KA 6 HOH A 40 220 220 HOH HOH . KA 6 HOH A 41 225 225 HOH HOH . LA 6 HOH C 1 168 16 HOH HOH . LA 6 HOH C 2 169 19 HOH HOH . LA 6 HOH C 3 170 23 HOH HOH . LA 6 HOH C 4 171 25 HOH HOH . LA 6 HOH C 5 172 33 HOH HOH . LA 6 HOH C 6 173 34 HOH HOH . LA 6 HOH C 7 174 36 HOH HOH . LA 6 HOH C 8 175 43 HOH HOH . LA 6 HOH C 9 176 48 HOH HOH . LA 6 HOH C 10 177 53 HOH HOH . LA 6 HOH C 11 178 56 HOH HOH . LA 6 HOH C 12 179 57 HOH HOH . LA 6 HOH C 13 180 59 HOH HOH . LA 6 HOH C 14 181 181 HOH HOH . LA 6 HOH C 15 182 182 HOH HOH . LA 6 HOH C 16 183 64 HOH HOH . LA 6 HOH C 17 184 65 HOH HOH . LA 6 HOH C 18 185 71 HOH HOH . LA 6 HOH C 19 186 72 HOH HOH . LA 6 HOH C 20 187 88 HOH HOH . LA 6 HOH C 21 188 99 HOH HOH . LA 6 HOH C 22 189 104 HOH HOH . LA 6 HOH C 23 190 190 HOH HOH . LA 6 HOH C 24 191 191 HOH HOH . LA 6 HOH C 25 192 107 HOH HOH . LA 6 HOH C 26 193 193 HOH HOH . LA 6 HOH C 27 194 118 HOH HOH . LA 6 HOH C 28 195 119 HOH HOH . LA 6 HOH C 29 196 124 HOH HOH . LA 6 HOH C 30 197 126 HOH HOH . LA 6 HOH C 31 198 132 HOH HOH . LA 6 HOH C 32 199 136 HOH HOH . LA 6 HOH C 33 200 144 HOH HOH . LA 6 HOH C 34 201 145 HOH HOH . LA 6 HOH C 35 202 202 HOH HOH . LA 6 HOH C 36 203 146 HOH HOH . LA 6 HOH C 37 204 147 HOH HOH . LA 6 HOH C 38 205 154 HOH HOH . LA 6 HOH C 39 206 156 HOH HOH . LA 6 HOH C 40 207 157 HOH HOH . LA 6 HOH C 41 216 216 HOH HOH . MA 6 HOH D 1 172 172 HOH HOH . MA 6 HOH D 2 173 3 HOH HOH . MA 6 HOH D 3 174 4 HOH HOH . MA 6 HOH D 4 175 6 HOH HOH . MA 6 HOH D 5 176 176 HOH HOH . MA 6 HOH D 6 177 9 HOH HOH . MA 6 HOH D 7 178 13 HOH HOH . MA 6 HOH D 8 179 179 HOH HOH . MA 6 HOH D 9 180 180 HOH HOH . MA 6 HOH D 10 181 18 HOH HOH . MA 6 HOH D 11 182 21 HOH HOH . MA 6 HOH D 12 183 26 HOH HOH . MA 6 HOH D 13 184 37 HOH HOH . MA 6 HOH D 14 185 38 HOH HOH . MA 6 HOH D 15 186 61 HOH HOH . MA 6 HOH D 16 187 62 HOH HOH . MA 6 HOH D 17 188 63 HOH HOH . MA 6 HOH D 18 189 189 HOH HOH . MA 6 HOH D 19 190 66 HOH HOH . MA 6 HOH D 20 191 69 HOH HOH . MA 6 HOH D 21 192 73 HOH HOH . MA 6 HOH D 22 193 78 HOH HOH . MA 6 HOH D 23 194 194 HOH HOH . MA 6 HOH D 24 195 195 HOH HOH . MA 6 HOH D 25 196 81 HOH HOH . MA 6 HOH D 26 197 197 HOH HOH . MA 6 HOH D 27 198 86 HOH HOH . MA 6 HOH D 28 199 199 HOH HOH . MA 6 HOH D 29 200 200 HOH HOH . MA 6 HOH D 30 201 201 HOH HOH . MA 6 HOH D 31 202 87 HOH HOH . MA 6 HOH D 32 203 91 HOH HOH . MA 6 HOH D 33 204 204 HOH HOH . MA 6 HOH D 34 205 93 HOH HOH . MA 6 HOH D 35 206 96 HOH HOH . MA 6 HOH D 36 207 207 HOH HOH . MA 6 HOH D 37 208 100 HOH HOH . MA 6 HOH D 38 209 209 HOH HOH . MA 6 HOH D 39 210 102 HOH HOH . MA 6 HOH D 40 211 211 HOH HOH . MA 6 HOH D 41 212 105 HOH HOH . MA 6 HOH D 42 213 109 HOH HOH . MA 6 HOH D 43 214 110 HOH HOH . MA 6 HOH D 44 215 215 HOH HOH . MA 6 HOH D 45 216 113 HOH HOH . MA 6 HOH D 46 217 217 HOH HOH . MA 6 HOH D 47 218 116 HOH HOH . MA 6 HOH D 48 219 219 HOH HOH . MA 6 HOH D 49 220 117 HOH HOH . MA 6 HOH D 50 221 120 HOH HOH . MA 6 HOH D 51 222 122 HOH HOH . MA 6 HOH D 52 223 125 HOH HOH . MA 6 HOH D 53 224 129 HOH HOH . MA 6 HOH D 54 225 134 HOH HOH . MA 6 HOH D 55 226 226 HOH HOH . MA 6 HOH D 56 227 227 HOH HOH . MA 6 HOH D 57 228 228 HOH HOH . MA 6 HOH D 58 229 229 HOH HOH . MA 6 HOH D 59 230 230 HOH HOH . MA 6 HOH D 60 231 231 HOH HOH . MA 6 HOH D 61 232 139 HOH HOH . MA 6 HOH D 62 233 143 HOH HOH . MA 6 HOH D 63 234 148 HOH HOH . MA 6 HOH D 64 235 149 HOH HOH . MA 6 HOH D 65 236 151 HOH HOH . MA 6 HOH D 66 237 153 HOH HOH . MA 6 HOH D 67 238 158 HOH HOH . MA 6 HOH D 68 239 159 HOH HOH . MA 6 HOH D 69 240 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -46.112 _atom_site.Cartn_y 50.734 _atom_site.Cartn_z 23.012 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 166 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #