data_3SB9 # _model_server_result.job_id 7qFhNGpQbGdulnnNpxt9Vg _model_server_result.datetime_utc '2024-11-24 11:05:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":164}' # _entry.id 3SB9 # _exptl.entry_id 3SB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SB9 _cell.length_a 79.114 _cell.length_b 79.114 _cell.length_c 87.367 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 76 1_555 D CU CU . B CU 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc2 A NE2 HIS 83 A HIS 80 1_555 D CU CU . B CU 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 B NE2 HIS 79 B HIS 76 1_555 D CU CU . B CU 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 B NE2 HIS 83 B HIS 80 1_555 D CU CU . B CU 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 D CU CU . B CU 163 1_555 G O HOH . B HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 D CU CU . B CU 163 1_555 G O HOH . B HOH 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 3SB9 _atom_sites.fract_transf_matrix[1][1] 0.01264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 163 163 FMT FMT . D 3 CU B 1 163 163 CU CU . E 2 FMT B 1 164 164 FMT FMT . F 4 HOH A 1 164 164 HOH HOH . F 4 HOH A 2 165 165 HOH HOH . F 4 HOH A 3 166 166 HOH HOH . F 4 HOH A 4 167 167 HOH HOH . F 4 HOH A 5 168 168 HOH HOH . F 4 HOH A 6 169 169 HOH HOH . F 4 HOH A 7 170 170 HOH HOH . F 4 HOH A 8 171 171 HOH HOH . F 4 HOH A 9 172 172 HOH HOH . F 4 HOH A 10 173 173 HOH HOH . F 4 HOH A 11 174 174 HOH HOH . F 4 HOH A 12 175 175 HOH HOH . F 4 HOH A 13 176 176 HOH HOH . F 4 HOH A 14 177 177 HOH HOH . F 4 HOH A 15 178 178 HOH HOH . F 4 HOH A 16 179 179 HOH HOH . F 4 HOH A 17 180 180 HOH HOH . F 4 HOH A 18 181 181 HOH HOH . F 4 HOH A 19 182 182 HOH HOH . F 4 HOH A 20 183 183 HOH HOH . F 4 HOH A 21 184 184 HOH HOH . F 4 HOH A 22 185 185 HOH HOH . F 4 HOH A 23 186 186 HOH HOH . F 4 HOH A 24 187 187 HOH HOH . F 4 HOH A 25 188 188 HOH HOH . F 4 HOH A 26 189 189 HOH HOH . F 4 HOH A 27 190 190 HOH HOH . F 4 HOH A 28 191 191 HOH HOH . F 4 HOH A 29 192 192 HOH HOH . F 4 HOH A 30 193 193 HOH HOH . F 4 HOH A 31 194 194 HOH HOH . F 4 HOH A 32 195 195 HOH HOH . F 4 HOH A 33 196 196 HOH HOH . F 4 HOH A 34 197 197 HOH HOH . F 4 HOH A 35 198 198 HOH HOH . F 4 HOH A 36 199 199 HOH HOH . F 4 HOH A 37 200 200 HOH HOH . F 4 HOH A 38 201 201 HOH HOH . F 4 HOH A 39 202 202 HOH HOH . F 4 HOH A 40 203 203 HOH HOH . F 4 HOH A 41 204 204 HOH HOH . F 4 HOH A 42 205 205 HOH HOH . F 4 HOH A 43 206 206 HOH HOH . F 4 HOH A 44 207 207 HOH HOH . F 4 HOH A 45 208 208 HOH HOH . F 4 HOH A 46 209 209 HOH HOH . G 4 HOH B 1 165 165 HOH HOH . G 4 HOH B 2 166 166 HOH HOH . G 4 HOH B 3 167 167 HOH HOH . G 4 HOH B 4 168 168 HOH HOH . G 4 HOH B 5 169 169 HOH HOH . G 4 HOH B 6 170 170 HOH HOH . G 4 HOH B 7 171 171 HOH HOH . G 4 HOH B 8 172 172 HOH HOH . G 4 HOH B 9 173 173 HOH HOH . G 4 HOH B 10 174 174 HOH HOH . G 4 HOH B 11 175 175 HOH HOH . G 4 HOH B 12 176 176 HOH HOH . G 4 HOH B 13 177 177 HOH HOH . G 4 HOH B 14 178 178 HOH HOH . G 4 HOH B 15 179 179 HOH HOH . G 4 HOH B 16 180 180 HOH HOH . G 4 HOH B 17 181 181 HOH HOH . G 4 HOH B 18 182 182 HOH HOH . G 4 HOH B 19 183 183 HOH HOH . G 4 HOH B 20 184 184 HOH HOH . G 4 HOH B 21 185 185 HOH HOH . G 4 HOH B 22 186 186 HOH HOH . G 4 HOH B 23 187 187 HOH HOH . G 4 HOH B 24 188 188 HOH HOH . G 4 HOH B 25 189 189 HOH HOH . G 4 HOH B 26 190 190 HOH HOH . G 4 HOH B 27 191 191 HOH HOH . G 4 HOH B 28 192 192 HOH HOH . G 4 HOH B 29 193 193 HOH HOH . G 4 HOH B 30 194 194 HOH HOH . G 4 HOH B 31 195 195 HOH HOH . G 4 HOH B 32 196 196 HOH HOH . G 4 HOH B 33 197 197 HOH HOH . G 4 HOH B 34 198 198 HOH HOH . G 4 HOH B 35 199 199 HOH HOH . G 4 HOH B 36 200 200 HOH HOH . G 4 HOH B 37 201 201 HOH HOH . G 4 HOH B 38 202 202 HOH HOH . G 4 HOH B 39 203 203 HOH HOH . G 4 HOH B 40 204 204 HOH HOH . G 4 HOH B 41 205 205 HOH HOH . G 4 HOH B 42 206 206 HOH HOH . G 4 HOH B 43 207 207 HOH HOH . G 4 HOH B 44 208 208 HOH HOH . G 4 HOH B 45 209 209 HOH HOH . G 4 HOH B 46 210 210 HOH HOH . G 4 HOH B 47 211 211 HOH HOH . G 4 HOH B 48 212 212 HOH HOH . G 4 HOH B 49 213 213 HOH HOH . G 4 HOH B 50 214 214 HOH HOH . G 4 HOH B 51 215 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . E 2 21.011 44.109 -7.161 1 37.44 ? C FMT 164 B 1 HETATM 2 O O1 FMT . . . E 2 20.735 42.968 -6.797 1 41.95 ? O1 FMT 164 B 1 HETATM 3 O O2 FMT . . . E 2 20.209 44.849 -7.73 1 36.52 ? O2 FMT 164 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #