data_3SBD
#
_model_server_result.job_id            -pF4FW1iCp5jdqAl03opNw 
_model_server_result.datetime_utc      '2024-12-21 04:46:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sbd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    3SBD 
#
_exptl.entry_id    3SBD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SBD 
_cell.length_a            50.266 
_cell.length_b            80.021 
_cell.length_c            94.91 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SBD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 27 A THR 17 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc2 A OG1 THR 45 A THR 35 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc3 G O HOH . A HOH 233 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc4 G O HOH . A HOH 234 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc5 C O2G GNP . A GNP 500 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc6 C O2B GNP . A GNP 500 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc7 B OG1 THR 27 B THR 17 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc8 B OG1 THR 45 B THR 35 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc9 H O HOH . B HOH 235 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc10 H O HOH . B HOH 236 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc11 E O3G GNP . B GNP 502 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? 
metalc ? metalc12 E O2B GNP . B GNP 502 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3SBD 
_atom_sites.fract_transf_matrix[1][1]    0.019894 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012497 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GNP A 1 500 500 GNP GNP . 
D 3 MG A 1 501 501 MG MG . 
E 2 GNP B 1 502 502 GNP GNP . 
F 3 MG B 1 503 503 MG MG . 
G 4 HOH A 1 178 1 HOH HOH . 
G 4 HOH A 2 179 3 HOH HOH . 
G 4 HOH A 3 180 4 HOH HOH . 
G 4 HOH A 4 181 9 HOH HOH . 
G 4 HOH A 5 182 13 HOH HOH . 
G 4 HOH A 6 183 14 HOH HOH . 
G 4 HOH A 7 184 15 HOH HOH . 
G 4 HOH A 8 185 16 HOH HOH . 
G 4 HOH A 9 186 20 HOH HOH . 
G 4 HOH A 10 187 21 HOH HOH . 
G 4 HOH A 11 188 23 HOH HOH . 
G 4 HOH A 12 189 24 HOH HOH . 
G 4 HOH A 13 190 26 HOH HOH . 
G 4 HOH A 14 191 28 HOH HOH . 
G 4 HOH A 15 192 31 HOH HOH . 
G 4 HOH A 16 193 33 HOH HOH . 
G 4 HOH A 17 194 35 HOH HOH . 
G 4 HOH A 18 195 36 HOH HOH . 
G 4 HOH A 19 196 37 HOH HOH . 
G 4 HOH A 20 197 42 HOH HOH . 
G 4 HOH A 21 198 45 HOH HOH . 
G 4 HOH A 22 199 46 HOH HOH . 
G 4 HOH A 23 200 47 HOH HOH . 
G 4 HOH A 24 201 48 HOH HOH . 
G 4 HOH A 25 202 49 HOH HOH . 
G 4 HOH A 26 203 53 HOH HOH . 
G 4 HOH A 27 204 57 HOH HOH . 
G 4 HOH A 28 205 58 HOH HOH . 
G 4 HOH A 29 206 60 HOH HOH . 
G 4 HOH A 30 207 61 HOH HOH . 
G 4 HOH A 31 208 63 HOH HOH . 
G 4 HOH A 32 209 64 HOH HOH . 
G 4 HOH A 33 210 65 HOH HOH . 
G 4 HOH A 34 211 66 HOH HOH . 
G 4 HOH A 35 212 68 HOH HOH . 
G 4 HOH A 36 213 69 HOH HOH . 
G 4 HOH A 37 214 71 HOH HOH . 
G 4 HOH A 38 215 72 HOH HOH . 
G 4 HOH A 39 216 73 HOH HOH . 
G 4 HOH A 40 217 75 HOH HOH . 
G 4 HOH A 41 218 76 HOH HOH . 
G 4 HOH A 42 219 78 HOH HOH . 
G 4 HOH A 43 220 84 HOH HOH . 
G 4 HOH A 44 221 87 HOH HOH . 
G 4 HOH A 45 222 91 HOH HOH . 
G 4 HOH A 46 223 92 HOH HOH . 
G 4 HOH A 47 224 95 HOH HOH . 
G 4 HOH A 48 225 96 HOH HOH . 
G 4 HOH A 49 226 97 HOH HOH . 
G 4 HOH A 50 227 98 HOH HOH . 
G 4 HOH A 51 228 99 HOH HOH . 
G 4 HOH A 52 229 100 HOH HOH . 
G 4 HOH A 53 230 105 HOH HOH . 
G 4 HOH A 54 231 106 HOH HOH . 
G 4 HOH A 55 232 107 HOH HOH . 
G 4 HOH A 56 233 112 HOH HOH . 
G 4 HOH A 57 234 113 HOH HOH . 
G 4 HOH A 58 235 114 HOH HOH . 
G 4 HOH A 59 236 115 HOH HOH . 
G 4 HOH A 60 237 116 HOH HOH . 
G 4 HOH A 61 238 117 HOH HOH . 
G 4 HOH A 62 239 118 HOH HOH . 
G 4 HOH A 63 240 119 HOH HOH . 
G 4 HOH A 64 241 120 HOH HOH . 
G 4 HOH A 65 242 121 HOH HOH . 
G 4 HOH A 66 243 122 HOH HOH . 
G 4 HOH A 67 244 141 HOH HOH . 
G 4 HOH A 68 245 144 HOH HOH . 
G 4 HOH A 69 246 145 HOH HOH . 
G 4 HOH A 70 247 146 HOH HOH . 
H 4 HOH B 1 178 2 HOH HOH . 
H 4 HOH B 2 179 5 HOH HOH . 
H 4 HOH B 3 180 6 HOH HOH . 
H 4 HOH B 4 181 7 HOH HOH . 
H 4 HOH B 5 182 8 HOH HOH . 
H 4 HOH B 6 183 10 HOH HOH . 
H 4 HOH B 7 184 11 HOH HOH . 
H 4 HOH B 8 185 12 HOH HOH . 
H 4 HOH B 9 186 17 HOH HOH . 
H 4 HOH B 10 187 18 HOH HOH . 
H 4 HOH B 11 188 19 HOH HOH . 
H 4 HOH B 12 189 22 HOH HOH . 
H 4 HOH B 13 190 25 HOH HOH . 
H 4 HOH B 14 191 27 HOH HOH . 
H 4 HOH B 15 192 29 HOH HOH . 
H 4 HOH B 16 193 30 HOH HOH . 
H 4 HOH B 17 194 32 HOH HOH . 
H 4 HOH B 18 195 34 HOH HOH . 
H 4 HOH B 19 196 38 HOH HOH . 
H 4 HOH B 20 197 39 HOH HOH . 
H 4 HOH B 21 198 40 HOH HOH . 
H 4 HOH B 22 199 41 HOH HOH . 
H 4 HOH B 23 200 43 HOH HOH . 
H 4 HOH B 24 201 44 HOH HOH . 
H 4 HOH B 25 202 50 HOH HOH . 
H 4 HOH B 26 203 51 HOH HOH . 
H 4 HOH B 27 204 52 HOH HOH . 
H 4 HOH B 28 205 54 HOH HOH . 
H 4 HOH B 29 206 55 HOH HOH . 
H 4 HOH B 30 207 56 HOH HOH . 
H 4 HOH B 31 208 59 HOH HOH . 
H 4 HOH B 32 209 62 HOH HOH . 
H 4 HOH B 33 210 67 HOH HOH . 
H 4 HOH B 34 211 70 HOH HOH . 
H 4 HOH B 35 212 74 HOH HOH . 
H 4 HOH B 36 213 77 HOH HOH . 
H 4 HOH B 37 214 79 HOH HOH . 
H 4 HOH B 38 215 80 HOH HOH . 
H 4 HOH B 39 216 81 HOH HOH . 
H 4 HOH B 40 217 82 HOH HOH . 
H 4 HOH B 41 218 83 HOH HOH . 
H 4 HOH B 42 219 85 HOH HOH . 
H 4 HOH B 43 220 86 HOH HOH . 
H 4 HOH B 44 221 88 HOH HOH . 
H 4 HOH B 45 222 89 HOH HOH . 
H 4 HOH B 46 223 90 HOH HOH . 
H 4 HOH B 47 224 93 HOH HOH . 
H 4 HOH B 48 225 94 HOH HOH . 
H 4 HOH B 49 226 101 HOH HOH . 
H 4 HOH B 50 227 102 HOH HOH . 
H 4 HOH B 51 228 103 HOH HOH . 
H 4 HOH B 52 229 104 HOH HOH . 
H 4 HOH B 53 230 108 HOH HOH . 
H 4 HOH B 54 231 109 HOH HOH . 
H 4 HOH B 55 232 110 HOH HOH . 
H 4 HOH B 56 233 111 HOH HOH . 
H 4 HOH B 57 234 123 HOH HOH . 
H 4 HOH B 58 235 124 HOH HOH . 
H 4 HOH B 59 236 125 HOH HOH . 
H 4 HOH B 60 237 126 HOH HOH . 
H 4 HOH B 61 238 127 HOH HOH . 
H 4 HOH B 62 239 128 HOH HOH . 
H 4 HOH B 63 240 129 HOH HOH . 
H 4 HOH B 64 241 130 HOH HOH . 
H 4 HOH B 65 242 131 HOH HOH . 
H 4 HOH B 66 243 132 HOH HOH . 
H 4 HOH B 67 244 133 HOH HOH . 
H 4 HOH B 68 245 134 HOH HOH . 
H 4 HOH B 69 246 135 HOH HOH . 
H 4 HOH B 70 247 136 HOH HOH . 
H 4 HOH B 71 248 137 HOH HOH . 
H 4 HOH B 72 249 138 HOH HOH . 
H 4 HOH B 73 250 139 HOH HOH . 
H 4 HOH B 74 251 140 HOH HOH . 
H 4 HOH B 75 252 142 HOH HOH . 
H 4 HOH B 76 253 143 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               12.123 
_atom_site.Cartn_y               71.391 
_atom_site.Cartn_z               16.173 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        26.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#