data_3SBN # _model_server_result.job_id y9fZr67HYSHwosbpx1OHHA _model_server_result.datetime_utc '2024-10-19 16:27:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":75}' # _entry.id 3SBN # _exptl.entry_id 3SBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.15 _cell.angle_gamma 90 _cell.entry_id 3SBN _cell.length_a 24.284 _cell.length_b 9.896 _cell.length_c 37.567 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N AIB 2 A AIB 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 sing covale ? covale2 A C AIB 2 A AIB 1 1_555 A N ASN 3 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 sing covale ? covale3 A C LEU 4 A LEU 3 1_555 A N AIB 5 A AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 sing covale ? covale4 A C AIB 5 A AIB 4 1_555 A N PRO 6 A PRO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 sing covale ? covale5 A C VAL 8 A VAL 7 1_555 A N AIB 9 A AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 sing covale ? covale6 A C AIB 9 A AIB 8 1_555 A N PRO 10 A PRO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 sing covale ? covale7 A C PRO 10 A PRO 9 1_555 A N AIB 11 A AIB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 sing covale ? covale8 A C AIB 11 A AIB 10 1_555 A N LEU 12 A LEU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 sing covale ? covale9 A C LEU 12 A LEU 11 1_555 A N AIB 13 A AIB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 sing covale ? covale10 A C AIB 13 A AIB 12 1_555 A N PRO 14 A PRO 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 sing covale ? covale11 A C PRO 14 A PRO 13 1_555 A N DCL 15 A DCL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.272 sing covale ? covale12 B C ACE 1 B ACE 20 1_555 B N AIB 2 B AIB 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 sing covale ? covale13 B C AIB 2 B AIB 21 1_555 B N ASN 3 B ASN 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 sing covale ? covale14 B C LEU 4 B LEU 23 1_555 B N AIB 5 B AIB 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 sing covale ? covale15 B C AIB 5 B AIB 24 1_555 B N PRO 6 B PRO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 sing covale ? covale16 B C VAL 8 B VAL 27 1_555 B N AIB 9 B AIB 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 sing covale ? covale17 B C AIB 9 B AIB 28 1_555 B N PRO 10 B PRO 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 sing covale ? covale18 B C PRO 10 B PRO 29 1_555 B N AIB 11 B AIB 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 sing covale ? covale19 B C AIB 11 B AIB 30 1_555 B N LEU 12 B LEU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 sing covale ? covale20 B C LEU 12 B LEU 31 1_555 B N AIB 13 B AIB 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 sing covale ? covale21 B C AIB 13 B AIB 32 1_555 B N PRO 14 B PRO 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 sing covale ? covale22 B C PRO 14 B PRO 33 1_555 B N DCL 15 B DCL 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 sing # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 50 n n C1 C2 CCN sing 51 n n C2 H21 CCN sing 52 n n C2 H22 CCN sing 53 n n C2 H23 CCN sing 54 n n # _atom_sites.entry_id 3SBN _atom_sites.fract_transf_matrix[1][1] 0.041179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005166 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.101051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CCN A 1 74 74 CCN CCN . D 2 CCN A 1 75 75 CCN CCN . E 3 MOH B 1 71 71 MOH MOH . F 3 MOH B 1 72 72 MOH MOH . G 4 HOH A 1 51 51 HOH HOH . G 4 HOH A 2 52 52 HOH HOH . G 4 HOH A 3 53 53 HOH HOH . G 4 HOH A 4 54 54 HOH HOH . G 4 HOH A 5 55 55 HOH HOH . G 4 HOH A 6 56 56 HOH HOH . G 4 HOH A 7 59 59 HOH HOH . G 4 HOH A 8 60 60 HOH HOH . G 4 HOH A 9 64 64 HOH HOH . H 4 HOH B 1 57 57 HOH HOH . H 4 HOH B 2 58 58 HOH HOH . H 4 HOH B 3 61 61 HOH HOH . H 4 HOH B 4 62 62 HOH HOH . H 4 HOH B 5 63 63 HOH HOH . H 4 HOH B 6 65 65 HOH HOH . H 4 HOH B 7 70 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . D 2 28.635 -2.772 38.025 0.25 20.59 ? N CCN 75 A 1 HETATM 2 C C1 CCN . . . D 2 28.396 -2.146 37.104 0.25 23.59 ? C1 CCN 75 A 1 HETATM 3 C C2 CCN . . . D 2 28.108 -1.351 35.901 0.25 22.88 ? C2 CCN 75 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #