data_3SBX
#
_model_server_result.job_id            IhOCsP6GLt38rZfqcv1i-Q 
_model_server_result.datetime_utc      '2024-11-05 01:19:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sbx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":188}' 
#
_entry.id    3SBX 
#
_exptl.entry_id    3SBX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         106.7 
_cell.angle_beta          90.13 
_cell.angle_gamma         98.81 
_cell.entry_id            3SBX 
_cell.length_a            67.24 
_cell.length_b            80.12 
_cell.length_c            85.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SBX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,Q,R 1 1 
C,D,K,L,S,T 2 1 
E,F,M,N,U,V 3 1 
G,H,O,P,W,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     3SBX 
_atom_sites.fract_transf_matrix[1][1]    0.014872 
_atom_sites.fract_transf_matrix[1][2]    0.002305 
_atom_sites.fract_transf_matrix[1][3]    0.000737 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01263 
_atom_sites.fract_transf_matrix[2][3]    0.003844 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012198 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 AMP A 1 188 188 AMP AMP . 
J 2 AMP B 1 188 188 AMP AMP . 
K 2 AMP C 1 188 188 AMP AMP . 
L 2 AMP D 1 188 188 AMP AMP . 
M 2 AMP E 1 188 188 AMP AMP . 
N 2 AMP F 1 188 188 AMP AMP . 
O 2 AMP G 1 188 188 AMP AMP . 
P 2 AMP H 1 188 188 AMP AMP . 
Q 3 HOH A 1 187 6 HOH HOH . 
Q 3 HOH A 2 189 7 HOH HOH . 
Q 3 HOH A 3 190 28 HOH HOH . 
Q 3 HOH A 4 191 35 HOH HOH . 
Q 3 HOH A 5 192 36 HOH HOH . 
Q 3 HOH A 6 193 50 HOH HOH . 
Q 3 HOH A 7 194 56 HOH HOH . 
Q 3 HOH A 8 195 65 HOH HOH . 
Q 3 HOH A 9 196 74 HOH HOH . 
Q 3 HOH A 10 197 78 HOH HOH . 
Q 3 HOH A 11 198 85 HOH HOH . 
Q 3 HOH A 12 199 95 HOH HOH . 
Q 3 HOH A 13 200 97 HOH HOH . 
Q 3 HOH A 14 201 113 HOH HOH . 
Q 3 HOH A 15 202 114 HOH HOH . 
Q 3 HOH A 16 203 115 HOH HOH . 
Q 3 HOH A 17 204 116 HOH HOH . 
Q 3 HOH A 18 205 117 HOH HOH . 
Q 3 HOH A 19 206 120 HOH HOH . 
Q 3 HOH A 20 207 173 HOH HOH . 
R 3 HOH B 1 187 2 HOH HOH . 
R 3 HOH B 2 189 10 HOH HOH . 
R 3 HOH B 3 190 17 HOH HOH . 
R 3 HOH B 4 191 20 HOH HOH . 
R 3 HOH B 5 192 47 HOH HOH . 
R 3 HOH B 6 193 64 HOH HOH . 
R 3 HOH B 7 194 71 HOH HOH . 
R 3 HOH B 8 195 72 HOH HOH . 
R 3 HOH B 9 196 77 HOH HOH . 
R 3 HOH B 10 197 79 HOH HOH . 
R 3 HOH B 11 198 83 HOH HOH . 
R 3 HOH B 12 199 94 HOH HOH . 
R 3 HOH B 13 200 101 HOH HOH . 
R 3 HOH B 14 201 111 HOH HOH . 
R 3 HOH B 15 202 118 HOH HOH . 
R 3 HOH B 16 203 121 HOH HOH . 
R 3 HOH B 17 204 122 HOH HOH . 
R 3 HOH B 18 205 124 HOH HOH . 
R 3 HOH B 19 206 174 HOH HOH . 
R 3 HOH B 20 207 177 HOH HOH . 
R 3 HOH B 21 208 178 HOH HOH . 
R 3 HOH B 22 209 180 HOH HOH . 
R 3 HOH B 23 210 181 HOH HOH . 
S 3 HOH C 1 187 1 HOH HOH . 
S 3 HOH C 2 189 5 HOH HOH . 
S 3 HOH C 3 190 11 HOH HOH . 
S 3 HOH C 4 191 16 HOH HOH . 
S 3 HOH C 5 192 18 HOH HOH . 
S 3 HOH C 6 193 25 HOH HOH . 
S 3 HOH C 7 194 33 HOH HOH . 
S 3 HOH C 8 195 34 HOH HOH . 
S 3 HOH C 9 196 37 HOH HOH . 
S 3 HOH C 10 197 39 HOH HOH . 
S 3 HOH C 11 198 40 HOH HOH . 
S 3 HOH C 12 199 41 HOH HOH . 
S 3 HOH C 13 200 55 HOH HOH . 
S 3 HOH C 14 201 59 HOH HOH . 
S 3 HOH C 15 202 86 HOH HOH . 
S 3 HOH C 16 203 90 HOH HOH . 
S 3 HOH C 17 204 100 HOH HOH . 
S 3 HOH C 18 205 106 HOH HOH . 
S 3 HOH C 19 206 107 HOH HOH . 
S 3 HOH C 20 207 125 HOH HOH . 
S 3 HOH C 21 208 126 HOH HOH . 
S 3 HOH C 22 209 128 HOH HOH . 
S 3 HOH C 23 210 129 HOH HOH . 
S 3 HOH C 24 211 151 HOH HOH . 
T 3 HOH D 1 187 3 HOH HOH . 
T 3 HOH D 2 189 21 HOH HOH . 
T 3 HOH D 3 190 23 HOH HOH . 
T 3 HOH D 4 191 29 HOH HOH . 
T 3 HOH D 5 192 31 HOH HOH . 
T 3 HOH D 6 193 32 HOH HOH . 
T 3 HOH D 7 194 45 HOH HOH . 
T 3 HOH D 8 195 51 HOH HOH . 
T 3 HOH D 9 196 68 HOH HOH . 
T 3 HOH D 10 197 76 HOH HOH . 
T 3 HOH D 11 198 88 HOH HOH . 
T 3 HOH D 12 199 89 HOH HOH . 
T 3 HOH D 13 200 96 HOH HOH . 
T 3 HOH D 14 201 98 HOH HOH . 
T 3 HOH D 15 202 102 HOH HOH . 
T 3 HOH D 16 203 103 HOH HOH . 
T 3 HOH D 17 204 104 HOH HOH . 
T 3 HOH D 18 205 105 HOH HOH . 
T 3 HOH D 19 206 108 HOH HOH . 
T 3 HOH D 20 207 109 HOH HOH . 
T 3 HOH D 21 208 123 HOH HOH . 
T 3 HOH D 22 209 130 HOH HOH . 
T 3 HOH D 23 210 131 HOH HOH . 
T 3 HOH D 24 211 132 HOH HOH . 
T 3 HOH D 25 212 134 HOH HOH . 
T 3 HOH D 26 213 135 HOH HOH . 
T 3 HOH D 27 214 136 HOH HOH . 
T 3 HOH D 28 215 137 HOH HOH . 
T 3 HOH D 29 216 179 HOH HOH . 
T 3 HOH D 30 217 183 HOH HOH . 
U 3 HOH E 1 187 9 HOH HOH . 
U 3 HOH E 2 189 12 HOH HOH . 
U 3 HOH E 3 190 49 HOH HOH . 
U 3 HOH E 4 191 62 HOH HOH . 
U 3 HOH E 5 192 81 HOH HOH . 
U 3 HOH E 6 193 92 HOH HOH . 
U 3 HOH E 7 194 110 HOH HOH . 
U 3 HOH E 8 195 138 HOH HOH . 
U 3 HOH E 9 196 139 HOH HOH . 
U 3 HOH E 10 197 140 HOH HOH . 
U 3 HOH E 11 198 141 HOH HOH . 
U 3 HOH E 12 199 142 HOH HOH . 
U 3 HOH E 13 200 152 HOH HOH . 
V 3 HOH F 1 187 19 HOH HOH . 
V 3 HOH F 2 189 22 HOH HOH . 
V 3 HOH F 3 190 24 HOH HOH . 
V 3 HOH F 4 191 44 HOH HOH . 
V 3 HOH F 5 192 54 HOH HOH . 
V 3 HOH F 6 193 66 HOH HOH . 
V 3 HOH F 7 194 67 HOH HOH . 
V 3 HOH F 8 195 82 HOH HOH . 
V 3 HOH F 9 196 87 HOH HOH . 
V 3 HOH F 10 197 143 HOH HOH . 
V 3 HOH F 11 198 144 HOH HOH . 
V 3 HOH F 12 199 145 HOH HOH . 
V 3 HOH F 13 200 146 HOH HOH . 
V 3 HOH F 14 201 147 HOH HOH . 
V 3 HOH F 15 202 148 HOH HOH . 
V 3 HOH F 16 203 149 HOH HOH . 
V 3 HOH F 17 204 150 HOH HOH . 
W 3 HOH G 1 187 4 HOH HOH . 
W 3 HOH G 2 189 8 HOH HOH . 
W 3 HOH G 3 190 13 HOH HOH . 
W 3 HOH G 4 191 14 HOH HOH . 
W 3 HOH G 5 192 26 HOH HOH . 
W 3 HOH G 6 193 38 HOH HOH . 
W 3 HOH G 7 194 43 HOH HOH . 
W 3 HOH G 8 195 52 HOH HOH . 
W 3 HOH G 9 196 53 HOH HOH . 
W 3 HOH G 10 197 61 HOH HOH . 
W 3 HOH G 11 198 69 HOH HOH . 
W 3 HOH G 12 199 70 HOH HOH . 
W 3 HOH G 13 200 73 HOH HOH . 
W 3 HOH G 14 201 75 HOH HOH . 
W 3 HOH G 15 202 80 HOH HOH . 
W 3 HOH G 16 203 93 HOH HOH . 
W 3 HOH G 17 204 99 HOH HOH . 
W 3 HOH G 18 205 127 HOH HOH . 
W 3 HOH G 19 206 153 HOH HOH . 
W 3 HOH G 20 207 154 HOH HOH . 
W 3 HOH G 21 208 155 HOH HOH . 
W 3 HOH G 22 209 156 HOH HOH . 
W 3 HOH G 23 210 157 HOH HOH . 
W 3 HOH G 24 211 158 HOH HOH . 
W 3 HOH G 25 212 159 HOH HOH . 
W 3 HOH G 26 213 160 HOH HOH . 
W 3 HOH G 27 214 182 HOH HOH . 
X 3 HOH H 1 187 15 HOH HOH . 
X 3 HOH H 2 189 27 HOH HOH . 
X 3 HOH H 3 190 30 HOH HOH . 
X 3 HOH H 4 191 46 HOH HOH . 
X 3 HOH H 5 192 48 HOH HOH . 
X 3 HOH H 6 193 57 HOH HOH . 
X 3 HOH H 7 194 58 HOH HOH . 
X 3 HOH H 8 195 60 HOH HOH . 
X 3 HOH H 9 196 63 HOH HOH . 
X 3 HOH H 10 197 84 HOH HOH . 
X 3 HOH H 11 198 119 HOH HOH . 
X 3 HOH H 12 199 162 HOH HOH . 
X 3 HOH H 13 200 163 HOH HOH . 
X 3 HOH H 14 201 164 HOH HOH . 
X 3 HOH H 15 202 165 HOH HOH . 
X 3 HOH H 16 203 166 HOH HOH . 
X 3 HOH H 17 204 167 HOH HOH . 
X 3 HOH H 18 205 168 HOH HOH . 
X 3 HOH H 19 206 169 HOH HOH . 
X 3 HOH H 20 207 170 HOH HOH . 
X 3 HOH H 21 208 171 HOH HOH . 
X 3 HOH H 22 209 172 HOH HOH . 
X 3 HOH H 23 210 175 HOH HOH . 
X 3 HOH H 24 211 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . M 2 -44.851 -31.57 -7.621 0.75 21.52 ? P AMP 188 E 1 
HETATM 2 O O1P AMP . . . M 2 -46.03 -31.033 -6.857 0.75 20.93 ? O1P AMP 188 E 1 
HETATM 3 O O2P AMP . . . M 2 -45.038 -33.004 -8.046 0.75 22.15 ? O2P AMP 188 E 1 
HETATM 4 O O3P AMP . . . M 2 -44.376 -30.638 -8.704 0.75 21.4 ? O3P AMP 188 E 1 
HETATM 5 O O5' AMP . . . M 2 -43.59 -31.549 -6.609 0.75 24.52 ? O5' AMP 188 E 1 
HETATM 6 C C5' AMP . . . M 2 -43.227 -32.646 -5.769 0.75 29.34 ? C5' AMP 188 E 1 
HETATM 7 C C4' AMP . . . M 2 -41.929 -32.405 -4.986 0.75 32.82 ? C4' AMP 188 E 1 
HETATM 8 O O4' AMP . . . M 2 -40.766 -32.377 -5.829 0.75 35.04 ? O4' AMP 188 E 1 
HETATM 9 C C3' AMP . . . M 2 -41.908 -31.08 -4.243 0.75 34.41 ? C3' AMP 188 E 1 
HETATM 10 O O3' AMP . . . M 2 -41.31 -31.323 -2.971 0.75 35.73 ? O3' AMP 188 E 1 
HETATM 11 C C2' AMP . . . M 2 -40.948 -30.208 -5.013 0.75 34.95 ? C2' AMP 188 E 1 
HETATM 12 O O2' AMP . . . M 2 -40.311 -29.27 -4.154 0.75 35.85 ? O2' AMP 188 E 1 
HETATM 13 C C1' AMP . . . M 2 -39.95 -31.257 -5.442 0.75 36.01 ? C1' AMP 188 E 1 
HETATM 14 N N9 AMP . . . M 2 -38.98 -30.783 -6.471 0.75 37.45 ? N9 AMP 188 E 1 
HETATM 15 C C8 AMP . . . M 2 -39.259 -30.088 -7.589 0.75 38.29 ? C8 AMP 188 E 1 
HETATM 16 N N7 AMP . . . M 2 -38.132 -29.822 -8.291 0.75 38.27 ? N7 AMP 188 E 1 
HETATM 17 C C5 AMP . . . M 2 -37.096 -30.346 -7.619 0.75 38.56 ? C5 AMP 188 E 1 
HETATM 18 C C6 AMP . . . M 2 -35.621 -30.424 -7.806 0.75 38.8 ? C6 AMP 188 E 1 
HETATM 19 N N6 AMP . . . M 2 -35.007 -29.872 -8.882 0.75 37.77 ? N6 AMP 188 E 1 
HETATM 20 N N1 AMP . . . M 2 -34.902 -31.064 -6.848 0.75 39.46 ? N1 AMP 188 E 1 
HETATM 21 C C2 AMP . . . M 2 -35.492 -31.617 -5.764 0.75 39.46 ? C2 AMP 188 E 1 
HETATM 22 N N3 AMP . . . M 2 -36.822 -31.586 -5.539 0.75 39 ? N3 AMP 188 E 1 
HETATM 23 C C4 AMP . . . M 2 -37.662 -30.973 -6.413 0.75 38.14 ? C4 AMP 188 E 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#