data_3SBZ # _model_server_result.job_id udEm2_jo4TPiBvurr706_A _model_server_result.datetime_utc '2024-11-23 11:44:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3SBZ # _exptl.entry_id 3SBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SBZ _cell.length_a 112.448 _cell.length_b 112.448 _cell.length_c 112.136 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -37.378667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 250 n n C1 C3 MLI sing 251 n n C1 H11 MLI sing 252 n n C1 H12 MLI sing 253 n n C2 O6 MLI doub 254 n n C2 O7 MLI sing 255 n n C3 O8 MLI doub 256 n n C3 O9 MLI sing 257 n n # _atom_sites.entry_id 3SBZ _atom_sites.fract_transf_matrix[1][1] 0.008893 _atom_sites.fract_transf_matrix[1][2] 0.005134 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 300 300 MLI MLI . C 2 MLI A 1 301 301 MLI MLI . D 2 MLI A 1 302 302 MLI MLI . E 3 GOL A 1 303 303 GOL GOL . F 4 HOH A 1 253 1 HOH HOH . F 4 HOH A 2 254 2 HOH HOH . F 4 HOH A 3 255 3 HOH HOH . F 4 HOH A 4 256 4 HOH HOH . F 4 HOH A 5 257 5 HOH HOH . F 4 HOH A 6 258 6 HOH HOH . F 4 HOH A 7 259 7 HOH HOH . F 4 HOH A 8 260 8 HOH HOH . F 4 HOH A 9 261 9 HOH HOH . F 4 HOH A 10 262 10 HOH HOH . F 4 HOH A 11 263 11 HOH HOH . F 4 HOH A 12 264 12 HOH HOH . F 4 HOH A 13 265 13 HOH HOH . F 4 HOH A 14 266 14 HOH HOH . F 4 HOH A 15 267 15 HOH HOH . F 4 HOH A 16 268 16 HOH HOH . F 4 HOH A 17 269 17 HOH HOH . F 4 HOH A 18 270 18 HOH HOH . F 4 HOH A 19 271 19 HOH HOH . F 4 HOH A 20 272 20 HOH HOH . F 4 HOH A 21 273 21 HOH HOH . F 4 HOH A 22 274 22 HOH HOH . F 4 HOH A 23 275 23 HOH HOH . F 4 HOH A 24 276 24 HOH HOH . F 4 HOH A 25 277 25 HOH HOH . F 4 HOH A 26 278 26 HOH HOH . F 4 HOH A 27 279 27 HOH HOH . F 4 HOH A 28 280 28 HOH HOH . F 4 HOH A 29 281 29 HOH HOH . F 4 HOH A 30 282 30 HOH HOH . F 4 HOH A 31 283 31 HOH HOH . F 4 HOH A 32 284 32 HOH HOH . F 4 HOH A 33 285 33 HOH HOH . F 4 HOH A 34 286 34 HOH HOH . F 4 HOH A 35 287 35 HOH HOH . F 4 HOH A 36 288 36 HOH HOH . F 4 HOH A 37 289 37 HOH HOH . F 4 HOH A 38 290 38 HOH HOH . F 4 HOH A 39 291 39 HOH HOH . F 4 HOH A 40 292 40 HOH HOH . F 4 HOH A 41 293 41 HOH HOH . F 4 HOH A 42 294 42 HOH HOH . F 4 HOH A 43 295 43 HOH HOH . F 4 HOH A 44 296 44 HOH HOH . F 4 HOH A 45 297 45 HOH HOH . F 4 HOH A 46 298 46 HOH HOH . F 4 HOH A 47 299 47 HOH HOH . F 4 HOH A 48 304 48 HOH HOH . F 4 HOH A 49 305 49 HOH HOH . F 4 HOH A 50 306 50 HOH HOH . F 4 HOH A 51 307 51 HOH HOH . F 4 HOH A 52 308 52 HOH HOH . F 4 HOH A 53 309 53 HOH HOH . F 4 HOH A 54 310 54 HOH HOH . F 4 HOH A 55 311 55 HOH HOH . F 4 HOH A 56 312 56 HOH HOH . F 4 HOH A 57 313 57 HOH HOH . F 4 HOH A 58 314 58 HOH HOH . F 4 HOH A 59 315 59 HOH HOH . F 4 HOH A 60 316 60 HOH HOH . F 4 HOH A 61 317 61 HOH HOH . F 4 HOH A 62 318 62 HOH HOH . F 4 HOH A 63 319 63 HOH HOH . F 4 HOH A 64 320 64 HOH HOH . F 4 HOH A 65 321 65 HOH HOH . F 4 HOH A 66 322 66 HOH HOH . F 4 HOH A 67 323 67 HOH HOH . F 4 HOH A 68 324 68 HOH HOH . F 4 HOH A 69 325 69 HOH HOH . F 4 HOH A 70 326 70 HOH HOH . F 4 HOH A 71 327 71 HOH HOH . F 4 HOH A 72 328 72 HOH HOH . F 4 HOH A 73 329 73 HOH HOH . F 4 HOH A 74 330 74 HOH HOH . F 4 HOH A 75 331 75 HOH HOH . F 4 HOH A 76 332 76 HOH HOH . F 4 HOH A 77 333 77 HOH HOH . F 4 HOH A 78 334 78 HOH HOH . F 4 HOH A 79 335 79 HOH HOH . F 4 HOH A 80 336 80 HOH HOH . F 4 HOH A 81 337 81 HOH HOH . F 4 HOH A 82 338 82 HOH HOH . F 4 HOH A 83 339 83 HOH HOH . F 4 HOH A 84 340 84 HOH HOH . F 4 HOH A 85 341 85 HOH HOH . F 4 HOH A 86 342 86 HOH HOH . F 4 HOH A 87 343 87 HOH HOH . F 4 HOH A 88 344 88 HOH HOH . F 4 HOH A 89 345 89 HOH HOH . F 4 HOH A 90 346 90 HOH HOH . F 4 HOH A 91 347 91 HOH HOH . F 4 HOH A 92 348 92 HOH HOH . F 4 HOH A 93 349 93 HOH HOH . F 4 HOH A 94 350 94 HOH HOH . F 4 HOH A 95 351 95 HOH HOH . F 4 HOH A 96 352 96 HOH HOH . F 4 HOH A 97 353 97 HOH HOH . F 4 HOH A 98 354 98 HOH HOH . F 4 HOH A 99 355 99 HOH HOH . F 4 HOH A 100 356 100 HOH HOH . F 4 HOH A 101 357 101 HOH HOH . F 4 HOH A 102 358 102 HOH HOH . F 4 HOH A 103 359 103 HOH HOH . F 4 HOH A 104 360 104 HOH HOH . F 4 HOH A 105 361 105 HOH HOH . F 4 HOH A 106 362 106 HOH HOH . F 4 HOH A 107 363 107 HOH HOH . F 4 HOH A 108 364 108 HOH HOH . F 4 HOH A 109 365 109 HOH HOH . F 4 HOH A 110 366 110 HOH HOH . F 4 HOH A 111 367 111 HOH HOH . F 4 HOH A 112 368 112 HOH HOH . F 4 HOH A 113 369 113 HOH HOH . F 4 HOH A 114 370 114 HOH HOH . F 4 HOH A 115 371 115 HOH HOH . F 4 HOH A 116 372 116 HOH HOH . F 4 HOH A 117 373 117 HOH HOH . F 4 HOH A 118 374 118 HOH HOH . F 4 HOH A 119 375 119 HOH HOH . F 4 HOH A 120 376 120 HOH HOH . F 4 HOH A 121 377 121 HOH HOH . F 4 HOH A 122 378 122 HOH HOH . F 4 HOH A 123 379 123 HOH HOH . F 4 HOH A 124 380 124 HOH HOH . F 4 HOH A 125 381 125 HOH HOH . F 4 HOH A 126 382 126 HOH HOH . F 4 HOH A 127 383 127 HOH HOH . F 4 HOH A 128 384 128 HOH HOH . F 4 HOH A 129 385 129 HOH HOH . F 4 HOH A 130 386 130 HOH HOH . F 4 HOH A 131 387 131 HOH HOH . F 4 HOH A 132 388 132 HOH HOH . F 4 HOH A 133 389 133 HOH HOH . F 4 HOH A 134 390 134 HOH HOH . F 4 HOH A 135 391 135 HOH HOH . F 4 HOH A 136 392 136 HOH HOH . F 4 HOH A 137 393 137 HOH HOH . F 4 HOH A 138 394 138 HOH HOH . F 4 HOH A 139 395 139 HOH HOH . F 4 HOH A 140 396 140 HOH HOH . F 4 HOH A 141 397 141 HOH HOH . F 4 HOH A 142 398 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . B 2 -49.691 19.883 -20.949 1 34 ? C1 MLI 300 A 1 HETATM 2 C C2 MLI . . . B 2 -50.802 20.078 -21.924 1 39.2 ? C2 MLI 300 A 1 HETATM 3 C C3 MLI . . . B 2 -48.467 19.627 -21.757 1 40.62 ? C3 MLI 300 A 1 HETATM 4 O O6 MLI . . . B 2 -50.956 21.183 -22.438 1 33.53 ? O6 MLI 300 A 1 HETATM 5 O O7 MLI . . . B 2 -51.545 19.145 -22.206 1 33.86 ? O7 MLI 300 A 1 HETATM 6 O O8 MLI . . . B 2 -47.405 19.41 -21.195 1 44.25 ? O8 MLI 300 A 1 HETATM 7 O O9 MLI . . . B 2 -48.586 19.44 -22.971 1 43.04 ? O9 MLI 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #