data_3SCM # _model_server_result.job_id wWtSjtfijNnEnZp-D4xQLg _model_server_result.datetime_utc '2024-11-19 07:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3scm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 3SCM # _exptl.entry_id 3SCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SCM _cell.length_a 94.523 _cell.length_b 94.523 _cell.length_c 289.613 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 305 NAG 5 n E NAG 2 E 2 NAG A 306 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 C SG CYS 22 C CYS 22 1_555 C SG CYS 89 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 136 C CYS 139 1_555 C SG CYS 186 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 D SG CYS 25 D CYS 23 1_555 D SG CYS 93 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 D SG CYS 146 D CYS 148 1_555 D SG CYS 211 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 F C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 G C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 437 n n C1 O1 NAG sing 438 n n C1 O5 NAG sing 439 n n C1 H1 NAG sing 440 n n C2 C3 NAG sing 441 n n C2 N2 NAG sing 442 n n C2 H2 NAG sing 443 n n C3 C4 NAG sing 444 n n C3 O3 NAG sing 445 n n C3 H3 NAG sing 446 n n C4 C5 NAG sing 447 n n C4 O4 NAG sing 448 n n C4 H4 NAG sing 449 n n C5 C6 NAG sing 450 n n C5 O5 NAG sing 451 n n C5 H5 NAG sing 452 n n C6 O6 NAG sing 453 n n C6 H61 NAG sing 454 n n C6 H62 NAG sing 455 n n C7 C8 NAG sing 456 n n C7 N2 NAG sing 457 n n C7 O7 NAG doub 458 n n C8 H81 NAG sing 459 n n C8 H82 NAG sing 460 n n C8 H83 NAG sing 461 n n N2 HN2 NAG sing 462 n n O1 HO1 NAG sing 463 n n O3 HO3 NAG sing 464 n n O4 HO4 NAG sing 465 n n O6 HO6 NAG sing 466 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3SCM _atom_sites.fract_transf_matrix[1][1] 0.010579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 303 303 NAG NAG . G 6 NAG A 1 304 304 NAG NAG . H 7 LGN A 1 307 1 LGN DRG . I 8 HOH A 1 308 36 HOH HOH . I 8 HOH A 2 309 53 HOH HOH . I 8 HOH A 3 310 62 HOH HOH . I 8 HOH A 4 311 68 HOH HOH . I 8 HOH A 5 312 79 HOH HOH . I 8 HOH A 6 313 84 HOH HOH . I 8 HOH A 7 314 104 HOH HOH . I 8 HOH A 8 315 106 HOH HOH . I 8 HOH A 9 316 133 HOH HOH . I 8 HOH A 10 317 156 HOH HOH . I 8 HOH A 11 318 158 HOH HOH . I 8 HOH A 12 319 160 HOH HOH . I 8 HOH A 13 320 164 HOH HOH . I 8 HOH A 14 321 168 HOH HOH . I 8 HOH A 15 322 169 HOH HOH . I 8 HOH A 16 323 173 HOH HOH . I 8 HOH A 17 324 174 HOH HOH . I 8 HOH A 18 325 175 HOH HOH . I 8 HOH A 19 326 177 HOH HOH . I 8 HOH A 20 327 181 HOH HOH . I 8 HOH A 21 328 182 HOH HOH . I 8 HOH A 22 329 183 HOH HOH . I 8 HOH A 23 330 184 HOH HOH . I 8 HOH A 24 331 188 HOH HOH . I 8 HOH A 25 332 198 HOH HOH . I 8 HOH A 26 333 201 HOH HOH . I 8 HOH A 27 334 203 HOH HOH . I 8 HOH A 28 335 204 HOH HOH . I 8 HOH A 29 336 205 HOH HOH . I 8 HOH A 30 337 206 HOH HOH . I 8 HOH A 31 338 207 HOH HOH . I 8 HOH A 32 339 208 HOH HOH . I 8 HOH A 33 340 209 HOH HOH . I 8 HOH A 34 341 216 HOH HOH . I 8 HOH A 35 342 217 HOH HOH . I 8 HOH A 36 343 218 HOH HOH . I 8 HOH A 37 344 219 HOH HOH . I 8 HOH A 38 345 220 HOH HOH . I 8 HOH A 39 346 221 HOH HOH . I 8 HOH A 40 347 223 HOH HOH . I 8 HOH A 41 348 224 HOH HOH . I 8 HOH A 42 349 226 HOH HOH . I 8 HOH A 43 350 228 HOH HOH . I 8 HOH A 44 351 237 HOH HOH . I 8 HOH A 45 352 238 HOH HOH . I 8 HOH A 46 353 241 HOH HOH . I 8 HOH A 47 354 165 HOH HOH . I 8 HOH A 48 355 170 HOH HOH . I 8 HOH A 49 356 171 HOH HOH . I 8 HOH A 50 357 176 HOH HOH . I 8 HOH A 51 358 179 HOH HOH . I 8 HOH A 52 359 181 HOH HOH . I 8 HOH A 53 360 183 HOH HOH . I 8 HOH A 54 361 198 HOH HOH . I 8 HOH A 55 362 200 HOH HOH . I 8 HOH A 56 363 201 HOH HOH . I 8 HOH A 57 364 249 HOH HOH . I 8 HOH A 58 365 9 HOH HOH . I 8 HOH A 59 366 11 HOH HOH . I 8 HOH A 60 367 15 HOH HOH . I 8 HOH A 61 368 18 HOH HOH . I 8 HOH A 62 369 21 HOH HOH . I 8 HOH A 63 370 22 HOH HOH . I 8 HOH A 64 371 24 HOH HOH . J 8 HOH B 1 100 13 HOH HOH . J 8 HOH B 2 101 20 HOH HOH . J 8 HOH B 3 102 23 HOH HOH . J 8 HOH B 4 103 28 HOH HOH . J 8 HOH B 5 104 34 HOH HOH . J 8 HOH B 6 105 48 HOH HOH . J 8 HOH B 7 106 86 HOH HOH . J 8 HOH B 8 115 115 HOH HOH . J 8 HOH B 9 166 166 HOH HOH . J 8 HOH B 10 167 167 HOH HOH . J 8 HOH B 11 189 189 HOH HOH . J 8 HOH B 12 208 208 HOH HOH . J 8 HOH B 13 227 227 HOH HOH . J 8 HOH B 14 235 235 HOH HOH . J 8 HOH B 15 239 239 HOH HOH . K 8 HOH C 1 211 3 HOH HOH . K 8 HOH C 2 212 6 HOH HOH . K 8 HOH C 3 213 213 HOH HOH . K 8 HOH C 4 214 16 HOH HOH . K 8 HOH C 5 215 42 HOH HOH . K 8 HOH C 6 216 43 HOH HOH . K 8 HOH C 7 217 44 HOH HOH . K 8 HOH C 8 218 69 HOH HOH . K 8 HOH C 9 219 74 HOH HOH . K 8 HOH C 10 220 111 HOH HOH . K 8 HOH C 11 221 140 HOH HOH . K 8 HOH C 12 222 143 HOH HOH . K 8 HOH C 13 223 223 HOH HOH . K 8 HOH C 14 224 144 HOH HOH . K 8 HOH C 15 225 190 HOH HOH . K 8 HOH C 16 226 226 HOH HOH . K 8 HOH C 17 227 191 HOH HOH . K 8 HOH C 18 228 202 HOH HOH . K 8 HOH C 19 229 229 HOH HOH . K 8 HOH C 20 230 177 HOH HOH . L 8 HOH D 1 248 12 HOH HOH . L 8 HOH D 2 249 14 HOH HOH . L 8 HOH D 3 250 17 HOH HOH . L 8 HOH D 4 251 25 HOH HOH . L 8 HOH D 5 252 30 HOH HOH . L 8 HOH D 6 253 31 HOH HOH . L 8 HOH D 7 254 33 HOH HOH . L 8 HOH D 8 255 41 HOH HOH . L 8 HOH D 9 256 67 HOH HOH . L 8 HOH D 10 257 257 HOH HOH . L 8 HOH D 11 258 91 HOH HOH . L 8 HOH D 12 259 125 HOH HOH . L 8 HOH D 13 260 165 HOH HOH . L 8 HOH D 14 261 261 HOH HOH . L 8 HOH D 15 262 171 HOH HOH . L 8 HOH D 16 263 192 HOH HOH . L 8 HOH D 17 264 193 HOH HOH . L 8 HOH D 18 265 196 HOH HOH . L 8 HOH D 19 266 199 HOH HOH . L 8 HOH D 20 267 210 HOH HOH . L 8 HOH D 21 268 229 HOH HOH . L 8 HOH D 22 269 233 HOH HOH . L 8 HOH D 23 270 234 HOH HOH . L 8 HOH D 24 271 236 HOH HOH . L 8 HOH D 25 272 240 HOH HOH . L 8 HOH D 26 273 224 HOH HOH . L 8 HOH D 27 274 232 HOH HOH . L 8 HOH D 28 275 233 HOH HOH . L 8 HOH D 29 276 238 HOH HOH . L 8 HOH D 30 277 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 6 -0.977 -93.332 -36.336 1 55.66 ? C1 NAG 304 A 1 HETATM 2 C C2 NAG . . . G 6 -1.654 -92.67 -35.129 1 57.1 ? C2 NAG 304 A 1 HETATM 3 C C3 NAG . . . G 6 -2.42 -91.413 -35.534 1 57.63 ? C3 NAG 304 A 1 HETATM 4 C C4 NAG . . . G 6 -1.481 -90.462 -36.273 1 58.12 ? C4 NAG 304 A 1 HETATM 5 C C5 NAG . . . G 6 -0.866 -91.196 -37.472 1 57.81 ? C5 NAG 304 A 1 HETATM 6 C C6 NAG . . . G 6 0.125 -90.318 -38.234 1 58.15 ? C6 NAG 304 A 1 HETATM 7 C C7 NAG . . . G 6 -2.286 -94.049 -33.198 1 57.61 ? C7 NAG 304 A 1 HETATM 8 C C8 NAG . . . G 6 -1.011 -93.631 -32.518 1 57.38 ? C8 NAG 304 A 1 HETATM 9 N N2 NAG . . . G 6 -2.541 -93.579 -34.424 1 57.31 ? N2 NAG 304 A 1 HETATM 10 O O3 NAG . . . G 6 -2.947 -90.783 -34.387 1 58.12 ? O3 NAG 304 A 1 HETATM 11 O O4 NAG . . . G 6 -2.165 -89.284 -36.663 1 58.74 ? O4 NAG 304 A 1 HETATM 12 O O5 NAG . . . G 6 -0.195 -92.371 -37.037 1 56.95 ? O5 NAG 304 A 1 HETATM 13 O O6 NAG . . . G 6 1.335 -90.209 -37.512 1 58.81 ? O6 NAG 304 A 1 HETATM 14 O O7 NAG . . . G 6 -3.055 -94.814 -32.615 1 57.68 ? O7 NAG 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #