data_3SCZ # _model_server_result.job_id KC82amWM1KaZizGVTDRTvg _model_server_result.datetime_utc '2024-11-29 14:11:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3scz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":269}' # _entry.id 3SCZ # _exptl.entry_id 3SCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.111 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HYPOXANTHINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SCZ _cell.length_a 115.59 _cell.length_b 115.59 _cell.length_c 86.3 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3 B,D,F 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 57.795 -100.103876 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 115.59 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C5 H4 N4 O' _chem_comp.formula_weight 136.111 _chem_comp.id HPA _chem_comp.mon_nstd_flag . _chem_comp.name HYPOXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HPA sing 139 n y N1 C6 HPA sing 140 n y N1 HN1 HPA sing 141 n n C2 N3 HPA doub 142 n y C2 H2 HPA sing 143 n n N3 C4 HPA sing 144 n y C4 C5 HPA doub 145 n y C4 N9 HPA sing 146 n y C5 C6 HPA sing 147 n y C5 N7 HPA sing 148 n y C6 O6 HPA doub 149 n n N7 C8 HPA sing 150 n y N7 HN7 HPA sing 151 n n C8 N9 HPA doub 152 n y C8 H8 HPA sing 153 n n # _atom_sites.entry_id 3SCZ _atom_sites.fract_transf_matrix[1][1] 0.008651 _atom_sites.fract_transf_matrix[1][2] 0.004995 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HPA A 1 269 1 HPA HPA . D 2 HPA B 1 269 1 HPA HPA . E 3 HOH A 1 275 275 HOH HOH . E 3 HOH A 2 276 366 HOH HOH . E 3 HOH A 3 277 369 HOH HOH . E 3 HOH A 4 280 280 HOH HOH . E 3 HOH A 5 299 299 HOH HOH . E 3 HOH A 6 300 300 HOH HOH . E 3 HOH A 7 301 2 HOH HOH . E 3 HOH A 8 302 3 HOH HOH . E 3 HOH A 9 303 5 HOH HOH . E 3 HOH A 10 304 9 HOH HOH . E 3 HOH A 11 305 12 HOH HOH . E 3 HOH A 12 306 17 HOH HOH . E 3 HOH A 13 307 22 HOH HOH . E 3 HOH A 14 308 25 HOH HOH . E 3 HOH A 15 309 32 HOH HOH . E 3 HOH A 16 310 310 HOH HOH . E 3 HOH A 17 311 34 HOH HOH . E 3 HOH A 18 312 36 HOH HOH . E 3 HOH A 19 313 39 HOH HOH . E 3 HOH A 20 314 44 HOH HOH . E 3 HOH A 21 315 51 HOH HOH . E 3 HOH A 22 316 57 HOH HOH . E 3 HOH A 23 317 317 HOH HOH . E 3 HOH A 24 318 61 HOH HOH . E 3 HOH A 25 319 67 HOH HOH . E 3 HOH A 26 320 73 HOH HOH . E 3 HOH A 27 321 81 HOH HOH . E 3 HOH A 28 322 198 HOH HOH . E 3 HOH A 29 323 208 HOH HOH . E 3 HOH A 30 324 13 HOH HOH . E 3 HOH A 31 325 41 HOH HOH . E 3 HOH A 32 326 173 HOH HOH . E 3 HOH A 33 327 193 HOH HOH . E 3 HOH A 34 328 1 HOH HOH . E 3 HOH A 35 329 2 HOH HOH . E 3 HOH A 36 330 4 HOH HOH . E 3 HOH A 37 331 331 HOH HOH . E 3 HOH A 38 332 5 HOH HOH . E 3 HOH A 39 333 8 HOH HOH . E 3 HOH A 40 334 9 HOH HOH . E 3 HOH A 41 335 335 HOH HOH . E 3 HOH A 42 336 10 HOH HOH . E 3 HOH A 43 337 337 HOH HOH . E 3 HOH A 44 338 11 HOH HOH . E 3 HOH A 45 339 12 HOH HOH . E 3 HOH A 46 340 13 HOH HOH . E 3 HOH A 47 341 15 HOH HOH . E 3 HOH A 48 342 342 HOH HOH . E 3 HOH A 49 343 343 HOH HOH . E 3 HOH A 50 344 17 HOH HOH . E 3 HOH A 51 345 345 HOH HOH . E 3 HOH A 52 346 346 HOH HOH . E 3 HOH A 53 348 18 HOH HOH . E 3 HOH A 54 349 19 HOH HOH . E 3 HOH A 55 350 20 HOH HOH . E 3 HOH A 56 351 25 HOH HOH . E 3 HOH A 57 352 26 HOH HOH . E 3 HOH A 58 353 27 HOH HOH . E 3 HOH A 59 354 28 HOH HOH . E 3 HOH A 60 355 29 HOH HOH . E 3 HOH A 61 356 30 HOH HOH . E 3 HOH A 62 358 36 HOH HOH . E 3 HOH A 63 359 359 HOH HOH . E 3 HOH A 64 361 361 HOH HOH . E 3 HOH A 65 362 37 HOH HOH . E 3 HOH A 66 363 38 HOH HOH . E 3 HOH A 67 364 39 HOH HOH . E 3 HOH A 68 365 40 HOH HOH . E 3 HOH A 69 366 41 HOH HOH . E 3 HOH A 70 367 42 HOH HOH . E 3 HOH A 71 368 44 HOH HOH . E 3 HOH A 72 369 49 HOH HOH . E 3 HOH A 73 370 50 HOH HOH . E 3 HOH A 74 371 51 HOH HOH . E 3 HOH A 75 372 52 HOH HOH . E 3 HOH A 76 373 53 HOH HOH . E 3 HOH A 77 374 54 HOH HOH . E 3 HOH A 78 375 55 HOH HOH . E 3 HOH A 79 376 56 HOH HOH . E 3 HOH A 80 377 63 HOH HOH . E 3 HOH A 81 378 64 HOH HOH . E 3 HOH A 82 379 65 HOH HOH . E 3 HOH A 83 380 66 HOH HOH . E 3 HOH A 84 381 67 HOH HOH . E 3 HOH A 85 382 68 HOH HOH . E 3 HOH A 86 383 71 HOH HOH . E 3 HOH A 87 384 72 HOH HOH . E 3 HOH A 88 385 73 HOH HOH . E 3 HOH A 89 386 74 HOH HOH . E 3 HOH A 90 387 83 HOH HOH . E 3 HOH A 91 388 84 HOH HOH . E 3 HOH A 92 389 86 HOH HOH . E 3 HOH A 93 390 87 HOH HOH . E 3 HOH A 94 391 88 HOH HOH . E 3 HOH A 95 392 89 HOH HOH . E 3 HOH A 96 393 90 HOH HOH . E 3 HOH A 97 394 91 HOH HOH . E 3 HOH A 98 395 92 HOH HOH . E 3 HOH A 99 396 94 HOH HOH . E 3 HOH A 100 397 95 HOH HOH . E 3 HOH A 101 398 97 HOH HOH . E 3 HOH A 102 399 98 HOH HOH . E 3 HOH A 103 400 101 HOH HOH . E 3 HOH A 104 401 102 HOH HOH . E 3 HOH A 105 402 103 HOH HOH . E 3 HOH A 106 403 104 HOH HOH . E 3 HOH A 107 404 107 HOH HOH . E 3 HOH A 108 405 109 HOH HOH . E 3 HOH A 109 406 111 HOH HOH . E 3 HOH A 110 407 112 HOH HOH . E 3 HOH A 111 408 114 HOH HOH . E 3 HOH A 112 409 116 HOH HOH . E 3 HOH A 113 410 118 HOH HOH . E 3 HOH A 114 411 119 HOH HOH . E 3 HOH A 115 412 120 HOH HOH . E 3 HOH A 116 413 122 HOH HOH . E 3 HOH A 117 414 123 HOH HOH . E 3 HOH A 118 415 126 HOH HOH . E 3 HOH A 119 416 129 HOH HOH . E 3 HOH A 120 417 130 HOH HOH . E 3 HOH A 121 418 131 HOH HOH . E 3 HOH A 122 419 132 HOH HOH . E 3 HOH A 123 420 134 HOH HOH . E 3 HOH A 124 421 135 HOH HOH . E 3 HOH A 125 422 138 HOH HOH . E 3 HOH A 126 423 139 HOH HOH . E 3 HOH A 127 424 140 HOH HOH . E 3 HOH A 128 425 141 HOH HOH . E 3 HOH A 129 426 142 HOH HOH . E 3 HOH A 130 427 143 HOH HOH . E 3 HOH A 131 428 144 HOH HOH . E 3 HOH A 132 429 145 HOH HOH . E 3 HOH A 133 430 146 HOH HOH . E 3 HOH A 134 431 149 HOH HOH . E 3 HOH A 135 432 151 HOH HOH . E 3 HOH A 136 433 152 HOH HOH . E 3 HOH A 137 434 154 HOH HOH . E 3 HOH A 138 435 155 HOH HOH . E 3 HOH A 139 436 157 HOH HOH . E 3 HOH A 140 437 160 HOH HOH . E 3 HOH A 141 438 162 HOH HOH . E 3 HOH A 142 439 165 HOH HOH . E 3 HOH A 143 440 166 HOH HOH . E 3 HOH A 144 441 169 HOH HOH . E 3 HOH A 145 442 170 HOH HOH . E 3 HOH A 146 443 172 HOH HOH . E 3 HOH A 147 444 174 HOH HOH . E 3 HOH A 148 445 175 HOH HOH . E 3 HOH A 149 446 176 HOH HOH . E 3 HOH A 150 447 177 HOH HOH . E 3 HOH A 151 448 178 HOH HOH . E 3 HOH A 152 449 179 HOH HOH . E 3 HOH A 153 450 184 HOH HOH . E 3 HOH A 154 451 185 HOH HOH . E 3 HOH A 155 452 193 HOH HOH . E 3 HOH A 156 453 197 HOH HOH . E 3 HOH A 157 454 215 HOH HOH . E 3 HOH A 158 455 216 HOH HOH . E 3 HOH A 159 456 221 HOH HOH . E 3 HOH A 160 457 222 HOH HOH . E 3 HOH A 161 458 224 HOH HOH . E 3 HOH A 162 459 225 HOH HOH . E 3 HOH A 163 460 231 HOH HOH . E 3 HOH A 164 461 235 HOH HOH . E 3 HOH A 165 462 236 HOH HOH . E 3 HOH A 166 463 238 HOH HOH . E 3 HOH A 167 464 239 HOH HOH . E 3 HOH A 168 465 247 HOH HOH . E 3 HOH A 169 466 251 HOH HOH . E 3 HOH A 170 467 258 HOH HOH . E 3 HOH A 171 468 264 HOH HOH . E 3 HOH A 172 469 265 HOH HOH . E 3 HOH A 173 470 268 HOH HOH . F 3 HOH B 1 283 283 HOH HOH . F 3 HOH B 2 301 301 HOH HOH . F 3 HOH B 3 302 1 HOH HOH . F 3 HOH B 4 303 4 HOH HOH . F 3 HOH B 5 304 6 HOH HOH . F 3 HOH B 6 305 7 HOH HOH . F 3 HOH B 7 306 8 HOH HOH . F 3 HOH B 8 307 14 HOH HOH . F 3 HOH B 9 308 15 HOH HOH . F 3 HOH B 10 309 309 HOH HOH . F 3 HOH B 11 310 23 HOH HOH . F 3 HOH B 12 311 27 HOH HOH . F 3 HOH B 13 312 33 HOH HOH . F 3 HOH B 14 313 37 HOH HOH . F 3 HOH B 15 314 43 HOH HOH . F 3 HOH B 16 315 54 HOH HOH . F 3 HOH B 17 316 63 HOH HOH . F 3 HOH B 18 317 72 HOH HOH . F 3 HOH B 19 318 92 HOH HOH . F 3 HOH B 20 319 319 HOH HOH . F 3 HOH B 21 320 107 HOH HOH . F 3 HOH B 22 321 201 HOH HOH . F 3 HOH B 23 322 202 HOH HOH . F 3 HOH B 24 323 203 HOH HOH . F 3 HOH B 25 324 204 HOH HOH . F 3 HOH B 26 325 3 HOH HOH . F 3 HOH B 27 326 25 HOH HOH . F 3 HOH B 28 327 163 HOH HOH . F 3 HOH B 29 328 191 HOH HOH . F 3 HOH B 30 329 195 HOH HOH . F 3 HOH B 31 330 3 HOH HOH . F 3 HOH B 32 331 6 HOH HOH . F 3 HOH B 33 332 7 HOH HOH . F 3 HOH B 34 333 14 HOH HOH . F 3 HOH B 35 334 21 HOH HOH . F 3 HOH B 36 335 23 HOH HOH . F 3 HOH B 37 336 24 HOH HOH . F 3 HOH B 38 337 31 HOH HOH . F 3 HOH B 39 338 32 HOH HOH . F 3 HOH B 40 339 339 HOH HOH . F 3 HOH B 41 340 33 HOH HOH . F 3 HOH B 42 341 34 HOH HOH . F 3 HOH B 43 342 35 HOH HOH . F 3 HOH B 44 343 43 HOH HOH . F 3 HOH B 45 344 344 HOH HOH . F 3 HOH B 46 345 45 HOH HOH . F 3 HOH B 47 346 46 HOH HOH . F 3 HOH B 48 347 347 HOH HOH . F 3 HOH B 49 348 48 HOH HOH . F 3 HOH B 50 349 349 HOH HOH . F 3 HOH B 51 350 350 HOH HOH . F 3 HOH B 52 351 351 HOH HOH . F 3 HOH B 53 352 57 HOH HOH . F 3 HOH B 54 353 353 HOH HOH . F 3 HOH B 55 354 354 HOH HOH . F 3 HOH B 56 355 58 HOH HOH . F 3 HOH B 57 356 59 HOH HOH . F 3 HOH B 58 357 357 HOH HOH . F 3 HOH B 59 358 358 HOH HOH . F 3 HOH B 60 359 61 HOH HOH . F 3 HOH B 61 360 360 HOH HOH . F 3 HOH B 62 361 69 HOH HOH . F 3 HOH B 63 362 70 HOH HOH . F 3 HOH B 64 363 76 HOH HOH . F 3 HOH B 65 364 78 HOH HOH . F 3 HOH B 66 365 79 HOH HOH . F 3 HOH B 67 366 47 HOH HOH . F 3 HOH B 68 367 81 HOH HOH . F 3 HOH B 69 368 82 HOH HOH . F 3 HOH B 70 369 60 HOH HOH . F 3 HOH B 71 370 85 HOH HOH . F 3 HOH B 72 371 93 HOH HOH . F 3 HOH B 73 372 96 HOH HOH . F 3 HOH B 74 373 100 HOH HOH . F 3 HOH B 75 374 105 HOH HOH . F 3 HOH B 76 375 106 HOH HOH . F 3 HOH B 77 376 108 HOH HOH . F 3 HOH B 78 377 110 HOH HOH . F 3 HOH B 79 378 115 HOH HOH . F 3 HOH B 80 379 117 HOH HOH . F 3 HOH B 81 380 121 HOH HOH . F 3 HOH B 82 381 127 HOH HOH . F 3 HOH B 83 382 133 HOH HOH . F 3 HOH B 84 383 147 HOH HOH . F 3 HOH B 85 384 148 HOH HOH . F 3 HOH B 86 385 156 HOH HOH . F 3 HOH B 87 386 159 HOH HOH . F 3 HOH B 88 387 161 HOH HOH . F 3 HOH B 89 388 164 HOH HOH . F 3 HOH B 90 389 180 HOH HOH . F 3 HOH B 91 390 186 HOH HOH . F 3 HOH B 92 391 187 HOH HOH . F 3 HOH B 93 392 188 HOH HOH . F 3 HOH B 94 393 189 HOH HOH . F 3 HOH B 95 394 190 HOH HOH . F 3 HOH B 96 395 194 HOH HOH . F 3 HOH B 97 396 195 HOH HOH . F 3 HOH B 98 397 196 HOH HOH . F 3 HOH B 99 398 203 HOH HOH . F 3 HOH B 100 399 213 HOH HOH . F 3 HOH B 101 400 217 HOH HOH . F 3 HOH B 102 401 218 HOH HOH . F 3 HOH B 103 402 219 HOH HOH . F 3 HOH B 104 403 232 HOH HOH . F 3 HOH B 105 404 248 HOH HOH . F 3 HOH B 106 405 249 HOH HOH . F 3 HOH B 107 406 261 HOH HOH . F 3 HOH B 108 407 263 HOH HOH . F 3 HOH B 109 408 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HPA . . . C 2 54.108 -48.563 27.172 1 10.97 ? N1 HPA 269 A 1 HETATM 2 C C2 HPA . . . C 2 53.768 -48.002 25.961 1 10.73 ? C2 HPA 269 A 1 HETATM 3 N N3 HPA . . . C 2 52.779 -48.569 25.173 1 10.98 ? N3 HPA 269 A 1 HETATM 4 C C4 HPA . . . C 2 52.185 -49.718 25.606 1 11.82 ? C4 HPA 269 A 1 HETATM 5 C C5 HPA . . . C 2 52.538 -50.316 26.823 1 12.42 ? C5 HPA 269 A 1 HETATM 6 C C6 HPA . . . C 2 53.509 -49.708 27.62 1 11.58 ? C6 HPA 269 A 1 HETATM 7 O O6 HPA . . . C 2 53.909 -50.197 28.689 1 13.05 ? O6 HPA 269 A 1 HETATM 8 N N7 HPA . . . C 2 51.756 -51.42 26.98 1 10.63 ? N7 HPA 269 A 1 HETATM 9 C C8 HPA . . . C 2 50.972 -51.506 25.892 1 12.37 ? C8 HPA 269 A 1 HETATM 10 N N9 HPA . . . C 2 51.236 -50.463 25.065 1 10.57 ? N9 HPA 269 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #