data_3SD5 # _model_server_result.job_id 2UUT9vKURrUUfKyq3W2lFw _model_server_result.datetime_utc '2025-07-07 07:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3SD5 # _exptl.entry_id 3SD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2,6-di(morpholin-4-yl)pyrimidin-4-yl]-4-(trifluoromethyl)pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.09 _cell.angle_gamma 90 _cell.entry_id 3SD5 _cell.length_a 144.264 _cell.length_b 67.848 _cell.length_c 106.633 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H21 F3 N6 O2' _chem_comp.formula_weight 410.394 _chem_comp.id SD5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2,6-di(morpholin-4-yl)pyrimidin-4-yl]-4-(trifluoromethyl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 SD5 sing 277 n n N01 HN01 SD5 sing 278 n n N01 HN0A SD5 sing 279 n n C03 C02 SD5 doub 280 n y C02 N07 SD5 sing 281 n y C03 C04 SD5 sing 282 n y C03 H03 SD5 sing 283 n n C26 C04 SD5 sing 284 n n C04 C05 SD5 doub 285 n y C05 C08 SD5 sing 286 n n C05 C06 SD5 sing 287 n y N07 C06 SD5 doub 288 n y C06 H06 SD5 sing 289 n n C09 C08 SD5 doub 290 n y C08 N13 SD5 sing 291 n y C09 C10 SD5 sing 292 n y C09 H09 SD5 sing 293 n n N20 C10 SD5 sing 294 n n C10 N11 SD5 doub 295 n y N11 C12 SD5 sing 296 n y N13 C12 SD5 doub 297 n y C12 N14 SD5 sing 298 n n N14 C19 SD5 sing 299 n n N14 C15 SD5 sing 300 n n C15 C16 SD5 sing 301 n n C15 H15 SD5 sing 302 n n C15 H15A SD5 sing 303 n n C16 O17 SD5 sing 304 n n C16 H16 SD5 sing 305 n n C16 H16A SD5 sing 306 n n C18 O17 SD5 sing 307 n n C19 C18 SD5 sing 308 n n C18 H18 SD5 sing 309 n n C18 H18A SD5 sing 310 n n C19 H19 SD5 sing 311 n n C19 H19A SD5 sing 312 n n C25 N20 SD5 sing 313 n n N20 C21 SD5 sing 314 n n C21 C22 SD5 sing 315 n n C21 H21 SD5 sing 316 n n C21 H21A SD5 sing 317 n n O23 C22 SD5 sing 318 n n C22 H22 SD5 sing 319 n n C22 H22A SD5 sing 320 n n C24 O23 SD5 sing 321 n n C25 C24 SD5 sing 322 n n C24 H24 SD5 sing 323 n n C24 H24A SD5 sing 324 n n C25 H25 SD5 sing 325 n n C25 H25A SD5 sing 326 n n F27 C26 SD5 sing 327 n n F29 C26 SD5 sing 328 n n C26 F28 SD5 sing 329 n n # _atom_sites.entry_id 3SD5 _atom_sites.fract_transf_matrix[1][1] 0.006932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00074 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SD5 A 1 1 1 SD5 SD5 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 1109 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 SD5 . . . B 2 28.916 11.525 20.15 1 62.89 ? N01 SD5 1 A 1 HETATM 2 C C02 SD5 . . . B 2 27.655 11.981 20.3 1 65.97 ? C02 SD5 1 A 1 HETATM 3 C C03 SD5 . . . B 2 26.948 12.54 19.242 1 67.16 ? C03 SD5 1 A 1 HETATM 4 C C04 SD5 . . . B 2 25.658 13.022 19.44 1 69.99 ? C04 SD5 1 A 1 HETATM 5 C C05 SD5 . . . B 2 25.078 12.935 20.716 1 74.48 ? C05 SD5 1 A 1 HETATM 6 C C06 SD5 . . . B 2 25.862 12.354 21.695 1 72.35 ? C06 SD5 1 A 1 HETATM 7 N N07 SD5 . . . B 2 27.103 11.887 21.523 1 69.73 ? N07 SD5 1 A 1 HETATM 8 C C08 SD5 . . . B 2 23.721 13.474 21.022 1 76.14 ? C08 SD5 1 A 1 HETATM 9 C C09 SD5 . . . B 2 23.336 14.747 20.635 1 76.18 ? C09 SD5 1 A 1 HETATM 10 C C10 SD5 . . . B 2 22.048 15.154 20.991 1 76.49 ? C10 SD5 1 A 1 HETATM 11 N N11 SD5 . . . B 2 21.23 14.354 21.673 1 75.5 ? N11 SD5 1 A 1 HETATM 12 C C12 SD5 . . . B 2 21.691 13.14 22.007 1 73.63 ? C12 SD5 1 A 1 HETATM 13 N N13 SD5 . . . B 2 22.909 12.645 21.712 1 75.28 ? N13 SD5 1 A 1 HETATM 14 N N14 SD5 . . . B 2 20.866 12.346 22.728 1 67.97 ? N14 SD5 1 A 1 HETATM 15 C C15 SD5 . . . B 2 21.226 11 23.161 1 66.49 ? C15 SD5 1 A 1 HETATM 16 C C16 SD5 . . . B 2 20.661 10.743 24.533 1 66.11 ? C16 SD5 1 A 1 HETATM 17 O O17 SD5 . . . B 2 19.25 10.942 24.565 1 63.77 ? O17 SD5 1 A 1 HETATM 18 C C18 SD5 . . . B 2 18.941 12.281 24.198 1 63.06 ? C18 SD5 1 A 1 HETATM 19 C C19 SD5 . . . B 2 19.42 12.593 22.809 1 64.27 ? C19 SD5 1 A 1 HETATM 20 N N20 SD5 . . . B 2 21.567 16.392 20.66 1 79.25 ? N20 SD5 1 A 1 HETATM 21 C C21 SD5 . . . B 2 20.165 16.778 20.863 1 80.08 ? C21 SD5 1 A 1 HETATM 22 C C22 SD5 . . . B 2 20.107 18.04 21.672 1 83.17 ? C22 SD5 1 A 1 HETATM 23 O O23 SD5 . . . B 2 20.856 19.083 21.064 1 86.27 ? O23 SD5 1 A 1 HETATM 24 C C24 SD5 . . . B 2 22.224 18.705 20.985 1 85.86 ? C24 SD5 1 A 1 HETATM 25 C C25 SD5 . . . B 2 22.411 17.469 20.147 1 83.18 ? C25 SD5 1 A 1 HETATM 26 C C26 SD5 . . . B 2 24.964 13.63 18.251 1 65.99 ? C26 SD5 1 A 1 HETATM 27 F F27 SD5 . . . B 2 25.579 13.366 17.111 1 64.3 ? F27 SD5 1 A 1 HETATM 28 F F28 SD5 . . . B 2 24.902 14.956 18.321 1 64.3 ? F28 SD5 1 A 1 HETATM 29 F F29 SD5 . . . B 2 23.714 13.188 18.109 1 66.03 ? F29 SD5 1 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #