data_3SD9 # _model_server_result.job_id QoU4G-AN86HuXQzjdXbo_Q _model_server_result.datetime_utc '2024-11-08 06:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3SD9 # _exptl.entry_id 3SD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.07 _cell.angle_gamma 90 _cell.entry_id 3SD9 _cell.length_a 32.965 _cell.length_b 86.412 _cell.length_c 72.193 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 2 1_555 A OD2 ASP 75 A ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc2 C ZN ZN . A ZN 2 1_555 A SG CYS 169 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 C ZN ZN . A ZN 2 1_555 A NE2 HIS 211 A HIS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 C ZN ZN . A ZN 2 1_555 E O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 D ZN ZN . B ZN 1 1_555 B OD2 ASP 75 B ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc6 D ZN ZN . B ZN 1 1_555 B SG CYS 169 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc7 D ZN ZN . B ZN 1 1_555 B NE2 HIS 211 B HIS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc8 D ZN ZN . B ZN 1 1_555 F O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SD9 _atom_sites.fract_transf_matrix[1][1] 0.030335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2 2 ZN ZN . D 2 ZN B 1 1 1 ZN ZN . E 3 HOH A 1 4 4 HOH HOH . E 3 HOH A 2 7 7 HOH HOH . E 3 HOH A 3 10 10 HOH HOH . E 3 HOH A 4 12 12 HOH HOH . E 3 HOH A 5 14 14 HOH HOH . E 3 HOH A 6 15 15 HOH HOH . E 3 HOH A 7 18 18 HOH HOH . E 3 HOH A 8 20 20 HOH HOH . E 3 HOH A 9 22 22 HOH HOH . E 3 HOH A 10 24 24 HOH HOH . E 3 HOH A 11 25 25 HOH HOH . E 3 HOH A 12 29 29 HOH HOH . E 3 HOH A 13 31 31 HOH HOH . E 3 HOH A 14 32 32 HOH HOH . E 3 HOH A 15 34 34 HOH HOH . E 3 HOH A 16 35 35 HOH HOH . E 3 HOH A 17 62 62 HOH HOH . E 3 HOH A 18 65 65 HOH HOH . E 3 HOH A 19 107 107 HOH HOH . E 3 HOH A 20 132 132 HOH HOH . E 3 HOH A 21 206 206 HOH HOH . E 3 HOH A 22 207 207 HOH HOH . E 3 HOH A 23 208 208 HOH HOH . E 3 HOH A 24 213 213 HOH HOH . E 3 HOH A 25 230 230 HOH HOH . E 3 HOH A 26 274 274 HOH HOH . E 3 HOH A 27 275 275 HOH HOH . E 3 HOH A 28 276 276 HOH HOH . E 3 HOH A 29 307 39 HOH HOH . E 3 HOH A 30 308 43 HOH HOH . E 3 HOH A 31 309 44 HOH HOH . E 3 HOH A 32 310 45 HOH HOH . E 3 HOH A 33 311 47 HOH HOH . E 3 HOH A 34 312 49 HOH HOH . E 3 HOH A 35 313 50 HOH HOH . E 3 HOH A 36 314 54 HOH HOH . E 3 HOH A 37 315 55 HOH HOH . E 3 HOH A 38 316 56 HOH HOH . E 3 HOH A 39 317 57 HOH HOH . E 3 HOH A 40 318 60 HOH HOH . E 3 HOH A 41 319 69 HOH HOH . E 3 HOH A 42 320 70 HOH HOH . E 3 HOH A 43 321 71 HOH HOH . E 3 HOH A 44 322 72 HOH HOH . E 3 HOH A 45 323 73 HOH HOH . E 3 HOH A 46 324 74 HOH HOH . E 3 HOH A 47 325 80 HOH HOH . E 3 HOH A 48 326 81 HOH HOH . E 3 HOH A 49 327 83 HOH HOH . E 3 HOH A 50 328 84 HOH HOH . E 3 HOH A 51 329 86 HOH HOH . E 3 HOH A 52 330 87 HOH HOH . E 3 HOH A 53 331 91 HOH HOH . E 3 HOH A 54 332 92 HOH HOH . E 3 HOH A 55 333 94 HOH HOH . E 3 HOH A 56 334 96 HOH HOH . E 3 HOH A 57 335 97 HOH HOH . E 3 HOH A 58 336 98 HOH HOH . E 3 HOH A 59 337 99 HOH HOH . E 3 HOH A 60 338 102 HOH HOH . E 3 HOH A 61 339 106 HOH HOH . E 3 HOH A 62 340 108 HOH HOH . E 3 HOH A 63 341 112 HOH HOH . E 3 HOH A 64 342 116 HOH HOH . E 3 HOH A 65 343 118 HOH HOH . E 3 HOH A 66 344 120 HOH HOH . E 3 HOH A 67 345 121 HOH HOH . E 3 HOH A 68 346 122 HOH HOH . E 3 HOH A 69 347 123 HOH HOH . E 3 HOH A 70 348 125 HOH HOH . E 3 HOH A 71 349 126 HOH HOH . E 3 HOH A 72 350 127 HOH HOH . E 3 HOH A 73 351 128 HOH HOH . E 3 HOH A 74 352 130 HOH HOH . E 3 HOH A 75 353 131 HOH HOH . E 3 HOH A 76 354 134 HOH HOH . E 3 HOH A 77 355 139 HOH HOH . E 3 HOH A 78 356 141 HOH HOH . E 3 HOH A 79 357 143 HOH HOH . E 3 HOH A 80 358 147 HOH HOH . E 3 HOH A 81 359 148 HOH HOH . E 3 HOH A 82 360 149 HOH HOH . E 3 HOH A 83 361 150 HOH HOH . E 3 HOH A 84 362 153 HOH HOH . E 3 HOH A 85 363 155 HOH HOH . E 3 HOH A 86 364 156 HOH HOH . E 3 HOH A 87 365 160 HOH HOH . E 3 HOH A 88 366 163 HOH HOH . E 3 HOH A 89 367 167 HOH HOH . E 3 HOH A 90 368 169 HOH HOH . E 3 HOH A 91 369 170 HOH HOH . E 3 HOH A 92 370 173 HOH HOH . E 3 HOH A 93 371 174 HOH HOH . E 3 HOH A 94 372 175 HOH HOH . E 3 HOH A 95 373 177 HOH HOH . E 3 HOH A 96 374 179 HOH HOH . E 3 HOH A 97 375 184 HOH HOH . E 3 HOH A 98 376 185 HOH HOH . E 3 HOH A 99 377 187 HOH HOH . E 3 HOH A 100 378 190 HOH HOH . E 3 HOH A 101 379 191 HOH HOH . E 3 HOH A 102 380 193 HOH HOH . E 3 HOH A 103 381 194 HOH HOH . E 3 HOH A 104 382 195 HOH HOH . E 3 HOH A 105 383 198 HOH HOH . E 3 HOH A 106 384 199 HOH HOH . E 3 HOH A 107 385 201 HOH HOH . E 3 HOH A 108 386 202 HOH HOH . E 3 HOH A 109 387 204 HOH HOH . E 3 HOH A 110 388 215 HOH HOH . E 3 HOH A 111 389 218 HOH HOH . E 3 HOH A 112 390 221 HOH HOH . E 3 HOH A 113 391 222 HOH HOH . E 3 HOH A 114 392 231 HOH HOH . E 3 HOH A 115 393 233 HOH HOH . E 3 HOH A 116 394 234 HOH HOH . E 3 HOH A 117 395 236 HOH HOH . E 3 HOH A 118 396 240 HOH HOH . E 3 HOH A 119 397 242 HOH HOH . E 3 HOH A 120 398 247 HOH HOH . E 3 HOH A 121 399 252 HOH HOH . E 3 HOH A 122 400 253 HOH HOH . E 3 HOH A 123 401 254 HOH HOH . E 3 HOH A 124 402 256 HOH HOH . E 3 HOH A 125 403 258 HOH HOH . E 3 HOH A 126 404 260 HOH HOH . E 3 HOH A 127 405 261 HOH HOH . E 3 HOH A 128 406 264 HOH HOH . E 3 HOH A 129 407 267 HOH HOH . F 3 HOH B 1 5 5 HOH HOH . F 3 HOH B 2 6 6 HOH HOH . F 3 HOH B 3 8 8 HOH HOH . F 3 HOH B 4 9 9 HOH HOH . F 3 HOH B 5 11 11 HOH HOH . F 3 HOH B 6 13 13 HOH HOH . F 3 HOH B 7 16 16 HOH HOH . F 3 HOH B 8 17 17 HOH HOH . F 3 HOH B 9 19 19 HOH HOH . F 3 HOH B 10 21 21 HOH HOH . F 3 HOH B 11 23 23 HOH HOH . F 3 HOH B 12 26 26 HOH HOH . F 3 HOH B 13 27 27 HOH HOH . F 3 HOH B 14 28 28 HOH HOH . F 3 HOH B 15 30 30 HOH HOH . F 3 HOH B 16 33 33 HOH HOH . F 3 HOH B 17 36 36 HOH HOH . F 3 HOH B 18 37 37 HOH HOH . F 3 HOH B 19 61 61 HOH HOH . F 3 HOH B 20 63 63 HOH HOH . F 3 HOH B 21 64 64 HOH HOH . F 3 HOH B 22 66 66 HOH HOH . F 3 HOH B 23 101 101 HOH HOH . F 3 HOH B 24 212 212 HOH HOH . F 3 HOH B 25 214 214 HOH HOH . F 3 HOH B 26 227 227 HOH HOH . F 3 HOH B 27 228 228 HOH HOH . F 3 HOH B 28 268 268 HOH HOH . F 3 HOH B 29 269 269 HOH HOH . F 3 HOH B 30 270 270 HOH HOH . F 3 HOH B 31 271 271 HOH HOH . F 3 HOH B 32 273 273 HOH HOH . F 3 HOH B 33 277 277 HOH HOH . F 3 HOH B 34 307 38 HOH HOH . F 3 HOH B 35 308 40 HOH HOH . F 3 HOH B 36 309 41 HOH HOH . F 3 HOH B 37 310 42 HOH HOH . F 3 HOH B 38 311 46 HOH HOH . F 3 HOH B 39 312 48 HOH HOH . F 3 HOH B 40 313 51 HOH HOH . F 3 HOH B 41 314 52 HOH HOH . F 3 HOH B 42 315 53 HOH HOH . F 3 HOH B 43 316 58 HOH HOH . F 3 HOH B 44 317 59 HOH HOH . F 3 HOH B 45 318 67 HOH HOH . F 3 HOH B 46 319 68 HOH HOH . F 3 HOH B 47 320 75 HOH HOH . F 3 HOH B 48 321 76 HOH HOH . F 3 HOH B 49 322 77 HOH HOH . F 3 HOH B 50 323 78 HOH HOH . F 3 HOH B 51 324 79 HOH HOH . F 3 HOH B 52 325 82 HOH HOH . F 3 HOH B 53 326 85 HOH HOH . F 3 HOH B 54 327 88 HOH HOH . F 3 HOH B 55 328 89 HOH HOH . F 3 HOH B 56 329 90 HOH HOH . F 3 HOH B 57 330 93 HOH HOH . F 3 HOH B 58 331 95 HOH HOH . F 3 HOH B 59 332 100 HOH HOH . F 3 HOH B 60 333 103 HOH HOH . F 3 HOH B 61 334 104 HOH HOH . F 3 HOH B 62 335 105 HOH HOH . F 3 HOH B 63 336 109 HOH HOH . F 3 HOH B 64 337 110 HOH HOH . F 3 HOH B 65 338 111 HOH HOH . F 3 HOH B 66 339 113 HOH HOH . F 3 HOH B 67 340 114 HOH HOH . F 3 HOH B 68 341 115 HOH HOH . F 3 HOH B 69 342 117 HOH HOH . F 3 HOH B 70 343 119 HOH HOH . F 3 HOH B 71 344 124 HOH HOH . F 3 HOH B 72 345 129 HOH HOH . F 3 HOH B 73 346 133 HOH HOH . F 3 HOH B 74 347 135 HOH HOH . F 3 HOH B 75 348 136 HOH HOH . F 3 HOH B 76 349 137 HOH HOH . F 3 HOH B 77 350 138 HOH HOH . F 3 HOH B 78 351 140 HOH HOH . F 3 HOH B 79 352 142 HOH HOH . F 3 HOH B 80 353 144 HOH HOH . F 3 HOH B 81 354 145 HOH HOH . F 3 HOH B 82 355 146 HOH HOH . F 3 HOH B 83 356 151 HOH HOH . F 3 HOH B 84 357 152 HOH HOH . F 3 HOH B 85 358 154 HOH HOH . F 3 HOH B 86 359 157 HOH HOH . F 3 HOH B 87 360 158 HOH HOH . F 3 HOH B 88 361 159 HOH HOH . F 3 HOH B 89 362 161 HOH HOH . F 3 HOH B 90 363 162 HOH HOH . F 3 HOH B 91 364 164 HOH HOH . F 3 HOH B 92 365 165 HOH HOH . F 3 HOH B 93 366 166 HOH HOH . F 3 HOH B 94 367 168 HOH HOH . F 3 HOH B 95 368 171 HOH HOH . F 3 HOH B 96 369 172 HOH HOH . F 3 HOH B 97 370 176 HOH HOH . F 3 HOH B 98 371 178 HOH HOH . F 3 HOH B 99 372 180 HOH HOH . F 3 HOH B 100 373 181 HOH HOH . F 3 HOH B 101 374 182 HOH HOH . F 3 HOH B 102 375 183 HOH HOH . F 3 HOH B 103 376 186 HOH HOH . F 3 HOH B 104 377 188 HOH HOH . F 3 HOH B 105 378 189 HOH HOH . F 3 HOH B 106 379 192 HOH HOH . F 3 HOH B 107 380 196 HOH HOH . F 3 HOH B 108 381 197 HOH HOH . F 3 HOH B 109 382 200 HOH HOH . F 3 HOH B 110 383 203 HOH HOH . F 3 HOH B 111 384 205 HOH HOH . F 3 HOH B 112 385 209 HOH HOH . F 3 HOH B 113 386 210 HOH HOH . F 3 HOH B 114 387 211 HOH HOH . F 3 HOH B 115 388 216 HOH HOH . F 3 HOH B 116 389 219 HOH HOH . F 3 HOH B 117 390 220 HOH HOH . F 3 HOH B 118 391 223 HOH HOH . F 3 HOH B 119 392 224 HOH HOH . F 3 HOH B 120 393 225 HOH HOH . F 3 HOH B 121 394 226 HOH HOH . F 3 HOH B 122 395 232 HOH HOH . F 3 HOH B 123 396 235 HOH HOH . F 3 HOH B 124 397 237 HOH HOH . F 3 HOH B 125 398 238 HOH HOH . F 3 HOH B 126 399 241 HOH HOH . F 3 HOH B 127 400 244 HOH HOH . F 3 HOH B 128 401 246 HOH HOH . F 3 HOH B 129 402 248 HOH HOH . F 3 HOH B 130 403 249 HOH HOH . F 3 HOH B 131 404 250 HOH HOH . F 3 HOH B 132 405 251 HOH HOH . F 3 HOH B 133 406 257 HOH HOH . F 3 HOH B 134 407 259 HOH HOH . F 3 HOH B 135 408 262 HOH HOH . F 3 HOH B 136 409 265 HOH HOH . F 3 HOH B 137 410 266 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.592 _atom_site.Cartn_y 5.198 _atom_site.Cartn_z -21.719 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #