data_3SDA
#
_model_server_result.job_id            SHNUAo0Y-hGXjqYH3Lxtmw 
_model_server_result.datetime_utc      '2024-10-12 11:16:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":100}' 
#
_entry.id    3SDA 
#
_exptl.entry_id    3SDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SDA 
_cell.length_a            94.75 
_cell.length_b            94.75 
_cell.length_c            287.52 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    5 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   5 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
5 n E NAG 1 E 1 NAG A 305 NAG 
5 n E NAG 2 E 2 NAG A 306 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
disulf ? disulf2 C SG CYS 161 C CYS 164 1_555 D SG CYS 172 D CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
disulf ? disulf3 D SG CYS 25 D CYS 23 1_555 D SG CYS 93 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
disulf ? disulf4 D SG CYS 146 D CYS 148 1_555 D SG CYS 211 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? 
covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 F C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? 
covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 G C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.201 ? 
covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     3SDA 
_atom_sites.fract_transf_matrix[1][1]    0.010554 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG A 1 303 303 NAG NAG . 
G 6 NAG A 1 304 304 NAG NAG . 
H 7 GCY A 1 601 601 GCY DRG . 
I 8 GOL B 1 100 100 GOL GOL . 
J 9 HOH A 1 307 2 HOH HOH . 
J 9 HOH A 2 308 7 HOH HOH . 
J 9 HOH A 3 309 11 HOH HOH . 
J 9 HOH A 4 310 25 HOH HOH . 
J 9 HOH A 5 311 41 HOH HOH . 
J 9 HOH A 6 312 50 HOH HOH . 
J 9 HOH A 7 313 54 HOH HOH . 
J 9 HOH A 8 314 57 HOH HOH . 
J 9 HOH A 9 315 67 HOH HOH . 
J 9 HOH A 10 316 68 HOH HOH . 
J 9 HOH A 11 317 75 HOH HOH . 
J 9 HOH A 12 318 112 HOH HOH . 
J 9 HOH A 13 319 113 HOH HOH . 
J 9 HOH A 14 320 117 HOH HOH . 
J 9 HOH A 15 321 118 HOH HOH . 
J 9 HOH A 16 322 119 HOH HOH . 
J 9 HOH A 17 323 122 HOH HOH . 
J 9 HOH A 18 324 124 HOH HOH . 
J 9 HOH A 19 325 125 HOH HOH . 
K 9 HOH B 1 101 46 HOH HOH . 
K 9 HOH B 2 102 59 HOH HOH . 
K 9 HOH B 3 103 79 HOH HOH . 
K 9 HOH B 4 104 80 HOH HOH . 
K 9 HOH B 5 105 81 HOH HOH . 
K 9 HOH B 6 106 83 HOH HOH . 
K 9 HOH B 7 107 84 HOH HOH . 
K 9 HOH B 8 108 86 HOH HOH . 
K 9 HOH B 9 109 88 HOH HOH . 
K 9 HOH B 10 110 89 HOH HOH . 
K 9 HOH B 11 114 114 HOH HOH . 
K 9 HOH B 12 121 121 HOH HOH . 
L 9 HOH C 1 211 1 HOH HOH . 
L 9 HOH C 2 212 3 HOH HOH . 
L 9 HOH C 3 213 6 HOH HOH . 
L 9 HOH C 4 214 16 HOH HOH . 
L 9 HOH C 5 215 21 HOH HOH . 
L 9 HOH C 6 216 24 HOH HOH . 
L 9 HOH C 7 217 28 HOH HOH . 
L 9 HOH C 8 218 36 HOH HOH . 
L 9 HOH C 9 219 37 HOH HOH . 
L 9 HOH C 10 220 47 HOH HOH . 
L 9 HOH C 11 221 90 HOH HOH . 
L 9 HOH C 12 222 92 HOH HOH . 
L 9 HOH C 13 223 95 HOH HOH . 
L 9 HOH C 14 224 96 HOH HOH . 
L 9 HOH C 15 225 98 HOH HOH . 
L 9 HOH C 16 226 123 HOH HOH . 
M 9 HOH D 1 248 4 HOH HOH . 
M 9 HOH D 2 249 10 HOH HOH . 
M 9 HOH D 3 250 20 HOH HOH . 
M 9 HOH D 4 251 22 HOH HOH . 
M 9 HOH D 5 252 27 HOH HOH . 
M 9 HOH D 6 253 30 HOH HOH . 
M 9 HOH D 7 254 56 HOH HOH . 
M 9 HOH D 8 255 64 HOH HOH . 
M 9 HOH D 9 256 97 HOH HOH . 
M 9 HOH D 10 257 99 HOH HOH . 
M 9 HOH D 11 258 100 HOH HOH . 
M 9 HOH D 12 259 105 HOH HOH . 
M 9 HOH D 13 260 110 HOH HOH . 
M 9 HOH D 14 261 120 HOH HOH . 
M 9 HOH D 15 262 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 8 3.316 -114.817 -42.091 1 69.36 ? C1 GOL 100 B 1 
HETATM 2 O O1 GOL . . . I 8 2.888 -115.232 -40.822 1 68.67 ? O1 GOL 100 B 1 
HETATM 3 C C2 GOL . . . I 8 3.185 -115.937 -43.095 1 69.61 ? C2 GOL 100 B 1 
HETATM 4 O O2 GOL . . . I 8 4.237 -116.846 -42.918 1 69.3 ? O2 GOL 100 B 1 
HETATM 5 C C3 GOL . . . I 8 1.814 -116.576 -42.946 1 69.69 ? C3 GOL 100 B 1 
HETATM 6 O O3 GOL . . . I 8 1.721 -117.847 -43.524 1 69.66 ? O3 GOL 100 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#