data_3SDN
#
_model_server_result.job_id            4sr7iSlUFDNmQ3PP7n6xsQ 
_model_server_result.datetime_utc      '2024-11-23 20:02:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":168}' 
#
_entry.id    3SDN 
#
_exptl.entry_id    3SDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SDN 
_cell.length_a            40.036 
_cell.length_b            48.011 
_cell.length_c            77.557 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc2 B FE HEM . A HEM 160 1_555 C O ACT . A ACT 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 76 n n 
C1 C2 EDO sing 77 n n 
C1 H11 EDO sing 78 n n 
C1 H12 EDO sing 79 n n 
O1 HO1 EDO sing 80 n n 
C2 O2 EDO sing 81 n n 
C2 H21 EDO sing 82 n n 
C2 H22 EDO sing 83 n n 
O2 HO2 EDO sing 84 n n 
#
_atom_sites.entry_id                     3SDN 
_atom_sites.fract_transf_matrix[1][1]    0.024978 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020829 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012894 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 160 160 HEM HEM . 
C 3 ACT A 1 165 165 ACT ACT . 
D 4 EDO A 1 167 167 EDO EDO . 
E 4 EDO A 1 168 168 EDO EDO . 
F 5 HOH A 1 154 64 HOH HOH . 
F 5 HOH A 2 301 301 HOH HOH . 
F 5 HOH A 3 302 302 HOH HOH . 
F 5 HOH A 4 303 303 HOH HOH . 
F 5 HOH A 5 304 304 HOH HOH . 
F 5 HOH A 6 305 305 HOH HOH . 
F 5 HOH A 7 306 306 HOH HOH . 
F 5 HOH A 8 307 307 HOH HOH . 
F 5 HOH A 9 308 308 HOH HOH . 
F 5 HOH A 10 310 310 HOH HOH . 
F 5 HOH A 11 311 311 HOH HOH . 
F 5 HOH A 12 312 312 HOH HOH . 
F 5 HOH A 13 313 313 HOH HOH . 
F 5 HOH A 14 314 314 HOH HOH . 
F 5 HOH A 15 315 315 HOH HOH . 
F 5 HOH A 16 316 316 HOH HOH . 
F 5 HOH A 17 318 318 HOH HOH . 
F 5 HOH A 18 319 319 HOH HOH . 
F 5 HOH A 19 320 320 HOH HOH . 
F 5 HOH A 20 321 321 HOH HOH . 
F 5 HOH A 21 322 322 HOH HOH . 
F 5 HOH A 22 323 323 HOH HOH . 
F 5 HOH A 23 324 324 HOH HOH . 
F 5 HOH A 24 326 326 HOH HOH . 
F 5 HOH A 25 327 327 HOH HOH . 
F 5 HOH A 26 328 328 HOH HOH . 
F 5 HOH A 27 329 329 HOH HOH . 
F 5 HOH A 28 331 331 HOH HOH . 
F 5 HOH A 29 333 333 HOH HOH . 
F 5 HOH A 30 334 334 HOH HOH . 
F 5 HOH A 31 335 335 HOH HOH . 
F 5 HOH A 32 337 337 HOH HOH . 
F 5 HOH A 33 339 339 HOH HOH . 
F 5 HOH A 34 340 340 HOH HOH . 
F 5 HOH A 35 341 341 HOH HOH . 
F 5 HOH A 36 370 370 HOH HOH . 
F 5 HOH A 37 371 371 HOH HOH . 
F 5 HOH A 38 372 372 HOH HOH . 
F 5 HOH A 39 373 373 HOH HOH . 
F 5 HOH A 40 375 375 HOH HOH . 
F 5 HOH A 41 376 376 HOH HOH . 
F 5 HOH A 42 377 377 HOH HOH . 
F 5 HOH A 43 378 378 HOH HOH . 
F 5 HOH A 44 379 379 HOH HOH . 
F 5 HOH A 45 382 382 HOH HOH . 
F 5 HOH A 46 383 383 HOH HOH . 
F 5 HOH A 47 385 385 HOH HOH . 
F 5 HOH A 48 386 386 HOH HOH . 
F 5 HOH A 49 387 387 HOH HOH . 
F 5 HOH A 50 388 388 HOH HOH . 
F 5 HOH A 51 389 389 HOH HOH . 
F 5 HOH A 52 390 390 HOH HOH . 
F 5 HOH A 53 393 393 HOH HOH . 
F 5 HOH A 54 394 394 HOH HOH . 
F 5 HOH A 55 396 396 HOH HOH . 
F 5 HOH A 56 397 397 HOH HOH . 
F 5 HOH A 57 398 398 HOH HOH . 
F 5 HOH A 58 399 399 HOH HOH . 
F 5 HOH A 59 400 400 HOH HOH . 
F 5 HOH A 60 401 401 HOH HOH . 
F 5 HOH A 61 402 402 HOH HOH . 
F 5 HOH A 62 403 403 HOH HOH . 
F 5 HOH A 63 406 406 HOH HOH . 
F 5 HOH A 64 407 407 HOH HOH . 
F 5 HOH A 65 408 408 HOH HOH . 
F 5 HOH A 66 409 409 HOH HOH . 
F 5 HOH A 67 410 410 HOH HOH . 
F 5 HOH A 68 411 411 HOH HOH . 
F 5 HOH A 69 414 414 HOH HOH . 
F 5 HOH A 70 415 415 HOH HOH . 
F 5 HOH A 71 416 416 HOH HOH . 
F 5 HOH A 72 417 417 HOH HOH . 
F 5 HOH A 73 418 418 HOH HOH . 
F 5 HOH A 74 420 420 HOH HOH . 
F 5 HOH A 75 421 421 HOH HOH . 
F 5 HOH A 76 422 422 HOH HOH . 
F 5 HOH A 77 423 423 HOH HOH . 
F 5 HOH A 78 424 424 HOH HOH . 
F 5 HOH A 79 425 425 HOH HOH . 
F 5 HOH A 80 426 426 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 -6.432 -12.819 3.777 1 39.57 ? C1 EDO 168 A 1 
HETATM 2 O O1 EDO . . . E 4 -5.564 -13.657 4.535 1 36.04 ? O1 EDO 168 A 1 
HETATM 3 C C2 EDO . . . E 4 -5.564 -11.964 2.877 1 41.18 ? C2 EDO 168 A 1 
HETATM 4 O O2 EDO . . . E 4 -5.083 -12.802 1.825 1 38.41 ? O2 EDO 168 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#