data_3SE2
#
_model_server_result.job_id            nqtSgdjivtRkVKDZUc1RCQ 
_model_server_result.datetime_utc      '2024-11-24 16:35:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3se2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2}' 
#
_entry.id    3SE2 
#
_exptl.entry_id    3SE2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.217 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            phenanthridin-6(5H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3SE2 
_cell.length_a            82.372 
_cell.length_b            82.372 
_cell.length_c            434.478 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SE2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,R 1 1 
B,H,I,S 2 1 
C,J,K,L,M,T 3 1 
D,N,O,P,Q,U 4 1 
A,C,E,F,G,J,K,L,M,R,T 5 1 
B,D,H,I,N,O,P,Q,S,U 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 1537 1_555 C SG CYS 10 C CYS 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 B SG CYS 10 B CYS 1537 1_555 D SG CYS 10 D CYS 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
#
_chem_comp.formula           'C13 H9 N O' 
_chem_comp.formula_weight    195.217 
_chem_comp.id                LDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              phenanthridin-6(5H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAK OAA LDR doub 204 n n 
CAD CAB LDR doub 205 n y 
CAB CAF LDR sing 206 n y 
CAB HAB LDR sing 207 n n 
CAE CAC LDR doub 208 n y 
CAC CAG LDR sing 209 n y 
CAC HAC LDR sing 210 n n 
CAD CAH LDR sing 211 n y 
CAD HAD LDR sing 212 n n 
CAI CAE LDR sing 213 n y 
CAE HAE LDR sing 214 n n 
CAF CAL LDR doub 215 n y 
CAF HAF LDR sing 216 n n 
CAM CAG LDR doub 217 n y 
CAG HAG LDR sing 218 n n 
CAH CAN LDR doub 219 n y 
CAH HAH LDR sing 220 n n 
CAI CAO LDR doub 221 n y 
CAI HAI LDR sing 222 n n 
CAL NAJ LDR sing 223 n n 
NAJ CAK LDR sing 224 n n 
NAJ HNAJ LDR sing 225 n n 
CAM CAK LDR sing 226 n n 
CAN CAL LDR sing 227 n y 
CAO CAM LDR sing 228 n y 
CAN CAO LDR sing 229 n n 
#
_atom_sites.entry_id                     3SE2 
_atom_sites.fract_transf_matrix[1][1]    0.01214 
_atom_sites.fract_transf_matrix[1][2]    0.007009 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002302 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LDR A 1 1 1 LDR LDR . 
F 3 GOL A 1 1721 1721 GOL GOL . 
G 3 GOL A 1 3 3 GOL GOL . 
H 2 LDR B 1 2 2 LDR LDR . 
I 4 SCN B 1 5 5 SCN SCN . 
J 5 3AB C 1 4 4 3AB 3AB . 
K 6 CL C 1 2 2 CL CL . 
L 3 GOL C 1 1721 1721 GOL GOL . 
M 4 SCN C 1 7 7 SCN SCN . 
N 5 3AB D 1 3 3 3AB 3AB . 
O 6 CL D 1 1 1 CL CL . 
P 3 GOL D 1 4 4 GOL GOL . 
Q 4 SCN D 1 6 6 SCN SCN . 
R 7 HOH A 1 6 6 HOH HOH . 
R 7 HOH A 2 7 7 HOH HOH . 
R 7 HOH A 3 8 8 HOH HOH . 
R 7 HOH A 4 10 10 HOH HOH . 
R 7 HOH A 5 17 17 HOH HOH . 
R 7 HOH A 6 19 19 HOH HOH . 
R 7 HOH A 7 20 20 HOH HOH . 
R 7 HOH A 8 24 24 HOH HOH . 
R 7 HOH A 9 29 29 HOH HOH . 
R 7 HOH A 10 30 30 HOH HOH . 
R 7 HOH A 11 37 37 HOH HOH . 
R 7 HOH A 12 39 39 HOH HOH . 
R 7 HOH A 13 50 50 HOH HOH . 
R 7 HOH A 14 52 52 HOH HOH . 
R 7 HOH A 15 56 56 HOH HOH . 
R 7 HOH A 16 58 58 HOH HOH . 
R 7 HOH A 17 63 63 HOH HOH . 
R 7 HOH A 18 68 68 HOH HOH . 
R 7 HOH A 19 71 71 HOH HOH . 
R 7 HOH A 20 73 73 HOH HOH . 
R 7 HOH A 21 79 79 HOH HOH . 
R 7 HOH A 22 84 84 HOH HOH . 
R 7 HOH A 23 85 85 HOH HOH . 
R 7 HOH A 24 91 91 HOH HOH . 
R 7 HOH A 25 96 96 HOH HOH . 
R 7 HOH A 26 105 105 HOH HOH . 
R 7 HOH A 27 106 106 HOH HOH . 
R 7 HOH A 28 115 115 HOH HOH . 
R 7 HOH A 29 123 123 HOH HOH . 
R 7 HOH A 30 131 131 HOH HOH . 
R 7 HOH A 31 132 132 HOH HOH . 
R 7 HOH A 32 149 149 HOH HOH . 
S 7 HOH B 1 4 4 HOH HOH . 
S 7 HOH B 2 9 9 HOH HOH . 
S 7 HOH B 3 11 11 HOH HOH . 
S 7 HOH B 4 16 16 HOH HOH . 
S 7 HOH B 5 21 21 HOH HOH . 
S 7 HOH B 6 22 22 HOH HOH . 
S 7 HOH B 7 23 23 HOH HOH . 
S 7 HOH B 8 25 25 HOH HOH . 
S 7 HOH B 9 26 26 HOH HOH . 
S 7 HOH B 10 28 28 HOH HOH . 
S 7 HOH B 11 33 33 HOH HOH . 
S 7 HOH B 12 36 36 HOH HOH . 
S 7 HOH B 13 43 43 HOH HOH . 
S 7 HOH B 14 48 48 HOH HOH . 
S 7 HOH B 15 51 51 HOH HOH . 
S 7 HOH B 16 54 54 HOH HOH . 
S 7 HOH B 17 61 61 HOH HOH . 
S 7 HOH B 18 62 62 HOH HOH . 
S 7 HOH B 19 65 65 HOH HOH . 
S 7 HOH B 20 69 69 HOH HOH . 
S 7 HOH B 21 72 72 HOH HOH . 
S 7 HOH B 22 74 74 HOH HOH . 
S 7 HOH B 23 76 76 HOH HOH . 
S 7 HOH B 24 77 77 HOH HOH . 
S 7 HOH B 25 90 90 HOH HOH . 
S 7 HOH B 26 93 93 HOH HOH . 
S 7 HOH B 27 98 98 HOH HOH . 
S 7 HOH B 28 100 100 HOH HOH . 
S 7 HOH B 29 109 109 HOH HOH . 
S 7 HOH B 30 110 110 HOH HOH . 
S 7 HOH B 31 112 112 HOH HOH . 
S 7 HOH B 32 113 113 HOH HOH . 
S 7 HOH B 33 117 117 HOH HOH . 
S 7 HOH B 34 121 121 HOH HOH . 
S 7 HOH B 35 128 128 HOH HOH . 
S 7 HOH B 36 133 133 HOH HOH . 
S 7 HOH B 37 139 139 HOH HOH . 
S 7 HOH B 38 140 140 HOH HOH . 
S 7 HOH B 39 142 142 HOH HOH . 
S 7 HOH B 40 1721 1721 HOH HOH . 
T 7 HOH C 1 13 13 HOH HOH . 
T 7 HOH C 2 15 15 HOH HOH . 
T 7 HOH C 3 18 18 HOH HOH . 
T 7 HOH C 4 27 27 HOH HOH . 
T 7 HOH C 5 31 31 HOH HOH . 
T 7 HOH C 6 32 32 HOH HOH . 
T 7 HOH C 7 38 38 HOH HOH . 
T 7 HOH C 8 42 42 HOH HOH . 
T 7 HOH C 9 45 45 HOH HOH . 
T 7 HOH C 10 47 47 HOH HOH . 
T 7 HOH C 11 49 49 HOH HOH . 
T 7 HOH C 12 60 60 HOH HOH . 
T 7 HOH C 13 64 64 HOH HOH . 
T 7 HOH C 14 66 66 HOH HOH . 
T 7 HOH C 15 67 67 HOH HOH . 
T 7 HOH C 16 75 75 HOH HOH . 
T 7 HOH C 17 80 80 HOH HOH . 
T 7 HOH C 18 81 81 HOH HOH . 
T 7 HOH C 19 87 87 HOH HOH . 
T 7 HOH C 20 89 89 HOH HOH . 
T 7 HOH C 21 94 94 HOH HOH . 
T 7 HOH C 22 97 97 HOH HOH . 
T 7 HOH C 23 102 102 HOH HOH . 
T 7 HOH C 24 108 108 HOH HOH . 
T 7 HOH C 25 116 116 HOH HOH . 
T 7 HOH C 26 122 122 HOH HOH . 
T 7 HOH C 27 124 124 HOH HOH . 
T 7 HOH C 28 127 127 HOH HOH . 
T 7 HOH C 29 130 130 HOH HOH . 
T 7 HOH C 30 136 136 HOH HOH . 
T 7 HOH C 31 138 138 HOH HOH . 
T 7 HOH C 32 145 145 HOH HOH . 
T 7 HOH C 33 146 146 HOH HOH . 
T 7 HOH C 34 148 148 HOH HOH . 
T 7 HOH C 35 150 150 HOH HOH . 
T 7 HOH C 36 151 151 HOH HOH . 
U 7 HOH D 1 5 5 HOH HOH . 
U 7 HOH D 2 12 12 HOH HOH . 
U 7 HOH D 3 14 14 HOH HOH . 
U 7 HOH D 4 34 34 HOH HOH . 
U 7 HOH D 5 35 35 HOH HOH . 
U 7 HOH D 6 40 40 HOH HOH . 
U 7 HOH D 7 41 41 HOH HOH . 
U 7 HOH D 8 44 44 HOH HOH . 
U 7 HOH D 9 46 46 HOH HOH . 
U 7 HOH D 10 53 53 HOH HOH . 
U 7 HOH D 11 55 55 HOH HOH . 
U 7 HOH D 12 57 57 HOH HOH . 
U 7 HOH D 13 59 59 HOH HOH . 
U 7 HOH D 14 70 70 HOH HOH . 
U 7 HOH D 15 78 78 HOH HOH . 
U 7 HOH D 16 82 82 HOH HOH . 
U 7 HOH D 17 83 83 HOH HOH . 
U 7 HOH D 18 86 86 HOH HOH . 
U 7 HOH D 19 88 88 HOH HOH . 
U 7 HOH D 20 92 92 HOH HOH . 
U 7 HOH D 21 95 95 HOH HOH . 
U 7 HOH D 22 99 99 HOH HOH . 
U 7 HOH D 23 101 101 HOH HOH . 
U 7 HOH D 24 103 103 HOH HOH . 
U 7 HOH D 25 104 104 HOH HOH . 
U 7 HOH D 26 107 107 HOH HOH . 
U 7 HOH D 27 111 111 HOH HOH . 
U 7 HOH D 28 114 114 HOH HOH . 
U 7 HOH D 29 118 118 HOH HOH . 
U 7 HOH D 30 119 119 HOH HOH . 
U 7 HOH D 31 120 120 HOH HOH . 
U 7 HOH D 32 125 125 HOH HOH . 
U 7 HOH D 33 126 126 HOH HOH . 
U 7 HOH D 34 129 129 HOH HOH . 
U 7 HOH D 35 134 134 HOH HOH . 
U 7 HOH D 36 135 135 HOH HOH . 
U 7 HOH D 37 137 137 HOH HOH . 
U 7 HOH D 38 141 141 HOH HOH . 
U 7 HOH D 39 143 143 HOH HOH . 
U 7 HOH D 40 144 144 HOH HOH . 
U 7 HOH D 41 147 147 HOH HOH . 
U 7 HOH D 42 1721 1721 HOH HOH . 
U 7 HOH D 43 1722 1722 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA LDR . . . H 2 -16.209 -0.982 32.074 1 17 ? OAA LDR 2 B 1 
HETATM 2 C CAB LDR . . . H 2 -12.744 0.403 36.596 1 30.82 ? CAB LDR 2 B 1 
HETATM 3 C CAC LDR . . . H 2 -18.256 2.555 32.792 1 24.69 ? CAC LDR 2 B 1 
HETATM 4 C CAD LDR . . . H 2 -13.343 1.605 36.934 1 30.2 ? CAD LDR 2 B 1 
HETATM 5 C CAE LDR . . . H 2 -17.816 3.373 33.836 1 25.12 ? CAE LDR 2 B 1 
HETATM 6 C CAF LDR . . . H 2 -13.236 -0.327 35.523 1 28.86 ? CAF LDR 2 B 1 
HETATM 7 C CAG LDR . . . H 2 -17.607 1.344 32.526 1 24.37 ? CAG LDR 2 B 1 
HETATM 8 C CAH LDR . . . H 2 -14.438 2.064 36.211 1 27.79 ? CAH LDR 2 B 1 
HETATM 9 C CAI LDR . . . H 2 -16.724 2.981 34.605 1 24.6 ? CAI LDR 2 B 1 
HETATM 10 N NAJ LDR . . . H 2 -14.79 -0.625 33.755 1 21.65 ? NAJ LDR 2 B 1 
HETATM 11 C CAK LDR . . . H 2 -15.852 -0.246 33.011 1 21.07 ? CAK LDR 2 B 1 
HETATM 12 C CAL LDR . . . H 2 -14.335 0.122 34.79 1 25.95 ? CAL LDR 2 B 1 
HETATM 13 C CAM LDR . . . H 2 -16.514 0.948 33.295 1 22.42 ? CAM LDR 2 B 1 
HETATM 14 C CAN LDR . . . H 2 -14.954 1.332 35.127 1 26.95 ? CAN LDR 2 B 1 
HETATM 15 C CAO LDR . . . H 2 -16.065 1.765 34.35 1 24.84 ? CAO LDR 2 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#