data_3SE6 # _model_server_result.job_id CRDa8-nuokWFo0PxOFDc_A _model_server_result.datetime_utc '2024-11-15 02:02:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3se6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1075}' # _entry.id 3SE6 # _exptl.entry_id 3SE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.71 _cell.angle_gamma 90 _cell.entry_id 3SE6 _cell.length_a 74.579 _cell.length_b 134.362 _cell.length_c 128.009 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F,G,H,I,J,O 1 1 B,E,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN MAN C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1071 NAG 2 n C NAG 2 C 2 NAG A 1072 NAG 2 n D NAG 1 D 1 NAG A 1073 NAG 2 n D NAG 2 D 2 NAG A 1074 NAG 3 n E NAG 1 E 1 NAG B 1077 NAG 3 n E NAG 2 E 2 NAG B 1078 NAG 3 n E MAN 3 E 3 MAN A 1079 MAN 3 n E MAN 4 E 4 MAN A 1080 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 421 A CYS 421 1_555 A SG CYS 460 A CYS 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 759 A CYS 759 1_555 A SG CYS 766 A CYS 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 421 B CYS 421 1_555 B SG CYS 460 B CYS 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 759 B CYS 759 1_555 B SG CYS 766 B CYS 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 85 A ASN 85 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 219 A ASN 219 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 405 A ASN 405 1_555 H C1 NAG . A NAG 1075 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 650 A ASN 650 1_555 I C1 NAG . A NAG 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale5 B ND2 ASN 85 B ASN 85 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 B ND2 ASN 219 B ASN 219 1_555 N C1 NAG . B NAG 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale10 E O4 NAG . E NAG 2 1_555 E C1 MAN . E MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.24 ? covale ? covale11 E O4 MAN . E MAN 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? metalc ? metalc1 A NE2 HIS 370 A HIS 370 1_555 F ZN ZN . A ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A NE2 HIS 374 A HIS 374 1_555 F ZN ZN . A ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A OE1 GLU 393 A GLU 393 1_555 F ZN ZN . A ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 G OXT LYS . A LYS 968 1_555 F ZN ZN . A ZN 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 B NE2 HIS 370 B HIS 370 1_555 L ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc6 B NE2 HIS 374 B HIS 374 1_555 L ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc7 B OE1 GLU 393 B GLU 393 1_555 L ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc8 K OXT LYS . B LYS 968 1_555 L ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3SE6 _atom_sites.fract_transf_matrix[1][1] 0.013409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000166 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 ZN A 1 5000 5000 ZN ZN . G 5 LYS A 1 968 968 LYS LYS . H 6 NAG A 1 1075 1075 NAG NAG . I 6 NAG A 1 1076 1076 NAG NAG . J 7 MES A 1 1083 1083 MES MES . K 5 LYS B 1 968 968 LYS LYS . L 4 ZN B 1 6000 6000 ZN ZN . M 7 MES B 1 1084 1084 MES MES . N 6 NAG B 1 1081 1081 NAG NAG . O 8 HOH A 1 969 969 HOH HOH . O 8 HOH A 2 970 970 HOH HOH . O 8 HOH A 3 971 971 HOH HOH . O 8 HOH A 4 972 972 HOH HOH . O 8 HOH A 5 973 973 HOH HOH . O 8 HOH A 6 974 974 HOH HOH . O 8 HOH A 7 975 975 HOH HOH . O 8 HOH A 8 976 976 HOH HOH . O 8 HOH A 9 977 977 HOH HOH . O 8 HOH A 10 978 978 HOH HOH . O 8 HOH A 11 979 979 HOH HOH . O 8 HOH A 12 980 980 HOH HOH . O 8 HOH A 13 981 981 HOH HOH . O 8 HOH A 14 982 982 HOH HOH . O 8 HOH A 15 983 983 HOH HOH . O 8 HOH A 16 984 984 HOH HOH . O 8 HOH A 17 985 985 HOH HOH . O 8 HOH A 18 987 987 HOH HOH . O 8 HOH A 19 988 988 HOH HOH . O 8 HOH A 20 989 989 HOH HOH . O 8 HOH A 21 990 990 HOH HOH . O 8 HOH A 22 991 991 HOH HOH . O 8 HOH A 23 992 992 HOH HOH . O 8 HOH A 24 993 993 HOH HOH . O 8 HOH A 25 994 994 HOH HOH . O 8 HOH A 26 995 995 HOH HOH . O 8 HOH A 27 996 996 HOH HOH . O 8 HOH A 28 997 997 HOH HOH . O 8 HOH A 29 998 998 HOH HOH . O 8 HOH A 30 999 999 HOH HOH . O 8 HOH A 31 1000 1000 HOH HOH . O 8 HOH A 32 1005 1005 HOH HOH . O 8 HOH A 33 1006 1006 HOH HOH . O 8 HOH A 34 1007 1007 HOH HOH . O 8 HOH A 35 1008 1008 HOH HOH . O 8 HOH A 36 1009 1009 HOH HOH . O 8 HOH A 37 1010 1010 HOH HOH . O 8 HOH A 38 1011 1011 HOH HOH . O 8 HOH A 39 1012 1012 HOH HOH . O 8 HOH A 40 1014 1014 HOH HOH . O 8 HOH A 41 1015 1015 HOH HOH . O 8 HOH A 42 1016 1016 HOH HOH . O 8 HOH A 43 1017 1017 HOH HOH . O 8 HOH A 44 1018 1018 HOH HOH . O 8 HOH A 45 1019 1019 HOH HOH . O 8 HOH A 46 1020 1020 HOH HOH . O 8 HOH A 47 1021 1021 HOH HOH . O 8 HOH A 48 1022 1022 HOH HOH . O 8 HOH A 49 1023 1023 HOH HOH . O 8 HOH A 50 1024 1024 HOH HOH . O 8 HOH A 51 1025 1025 HOH HOH . O 8 HOH A 52 1026 1026 HOH HOH . O 8 HOH A 53 1028 1028 HOH HOH . O 8 HOH A 54 1029 1029 HOH HOH . O 8 HOH A 55 1030 1030 HOH HOH . O 8 HOH A 56 1031 1031 HOH HOH . O 8 HOH A 57 1032 1032 HOH HOH . O 8 HOH A 58 1033 1033 HOH HOH . O 8 HOH A 59 1034 1034 HOH HOH . O 8 HOH A 60 1036 1036 HOH HOH . O 8 HOH A 61 1037 1037 HOH HOH . O 8 HOH A 62 1039 1039 HOH HOH . O 8 HOH A 63 1040 1040 HOH HOH . O 8 HOH A 64 1041 1041 HOH HOH . O 8 HOH A 65 1042 1042 HOH HOH . O 8 HOH A 66 1043 1043 HOH HOH . O 8 HOH A 67 1044 1044 HOH HOH . O 8 HOH A 68 1045 1045 HOH HOH . O 8 HOH A 69 1046 1046 HOH HOH . O 8 HOH A 70 1047 1047 HOH HOH . O 8 HOH A 71 1048 1048 HOH HOH . O 8 HOH A 72 1049 1049 HOH HOH . O 8 HOH A 73 1050 1050 HOH HOH . P 8 HOH B 1 970 970 HOH HOH . P 8 HOH B 2 971 971 HOH HOH . P 8 HOH B 3 972 972 HOH HOH . P 8 HOH B 4 973 973 HOH HOH . P 8 HOH B 5 974 974 HOH HOH . P 8 HOH B 6 975 975 HOH HOH . P 8 HOH B 7 976 976 HOH HOH . P 8 HOH B 8 977 977 HOH HOH . P 8 HOH B 9 979 979 HOH HOH . P 8 HOH B 10 980 980 HOH HOH . P 8 HOH B 11 981 981 HOH HOH . P 8 HOH B 12 982 982 HOH HOH . P 8 HOH B 13 983 983 HOH HOH . P 8 HOH B 14 984 984 HOH HOH . P 8 HOH B 15 985 985 HOH HOH . P 8 HOH B 16 986 986 HOH HOH . P 8 HOH B 17 987 987 HOH HOH . P 8 HOH B 18 989 989 HOH HOH . P 8 HOH B 19 990 990 HOH HOH . P 8 HOH B 20 991 991 HOH HOH . P 8 HOH B 21 992 992 HOH HOH . P 8 HOH B 22 993 993 HOH HOH . P 8 HOH B 23 994 994 HOH HOH . P 8 HOH B 24 996 996 HOH HOH . P 8 HOH B 25 997 997 HOH HOH . P 8 HOH B 26 998 998 HOH HOH . P 8 HOH B 27 999 999 HOH HOH . P 8 HOH B 28 1000 1000 HOH HOH . P 8 HOH B 29 1002 1002 HOH HOH . P 8 HOH B 30 1003 1003 HOH HOH . P 8 HOH B 31 1004 1004 HOH HOH . P 8 HOH B 32 1006 1006 HOH HOH . P 8 HOH B 33 1007 1007 HOH HOH . P 8 HOH B 34 1008 1008 HOH HOH . P 8 HOH B 35 1009 1009 HOH HOH . P 8 HOH B 36 1010 1010 HOH HOH . P 8 HOH B 37 1011 1011 HOH HOH . P 8 HOH B 38 1012 1012 HOH HOH . P 8 HOH B 39 1013 1013 HOH HOH . P 8 HOH B 40 1014 1014 HOH HOH . P 8 HOH B 41 1015 1015 HOH HOH . P 8 HOH B 42 1016 1016 HOH HOH . P 8 HOH B 43 1018 1018 HOH HOH . P 8 HOH B 44 1019 1019 HOH HOH . P 8 HOH B 45 1020 1020 HOH HOH . P 8 HOH B 46 1021 1021 HOH HOH . P 8 HOH B 47 1022 1022 HOH HOH . P 8 HOH B 48 1023 1023 HOH HOH . P 8 HOH B 49 1024 1024 HOH HOH . P 8 HOH B 50 1026 1026 HOH HOH . P 8 HOH B 51 1027 1027 HOH HOH . P 8 HOH B 52 1028 1028 HOH HOH . P 8 HOH B 53 1029 1029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 6 39.905 6.467 -10.426 1 79.91 ? C1 NAG 1075 A 1 HETATM 2 C C2 NAG . . . H 6 39.745 5.917 -11.847 1 81.13 ? C2 NAG 1075 A 1 HETATM 3 C C3 NAG . . . H 6 41.046 6.019 -12.639 1 81.45 ? C3 NAG 1075 A 1 HETATM 4 C C4 NAG . . . H 6 41.614 7.434 -12.567 1 76.19 ? C4 NAG 1075 A 1 HETATM 5 C C5 NAG . . . H 6 41.769 7.843 -11.098 1 84.82 ? C5 NAG 1075 A 1 HETATM 6 C C6 NAG . . . H 6 42.34 9.262 -10.918 1 86.04 ? C6 NAG 1075 A 1 HETATM 7 C C7 NAG . . . H 6 38.068 4.203 -12.332 1 86.79 ? C7 NAG 1075 A 1 HETATM 8 C C8 NAG . . . H 6 38.001 2.898 -13.067 1 93.12 ? C8 NAG 1075 A 1 HETATM 9 N N2 NAG . . . H 6 39.261 4.542 -11.831 1 82.69 ? N2 NAG 1075 A 1 HETATM 10 O O3 NAG . . . H 6 40.81 5.655 -13.982 1 86.18 ? O3 NAG 1075 A 1 HETATM 11 O O4 NAG . . . H 6 42.845 7.508 -13.274 1 62.86 ? O4 NAG 1075 A 1 HETATM 12 O O5 NAG . . . H 6 40.52 7.741 -10.432 1 74 ? O5 NAG 1075 A 1 HETATM 13 O O6 NAG . . . H 6 42.628 9.571 -9.56 1 58.81 ? O6 NAG 1075 A 1 HETATM 14 O O7 NAG . . . H 6 37.052 4.894 -12.217 1 79.94 ? O7 NAG 1075 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #