data_3SEA # _model_server_result.job_id RVoAmdKTDlaEZcH7YA4Mlg _model_server_result.datetime_utc '2024-11-24 05:29:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3sea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 3SEA # _exptl.entry_id 3SEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SEA _cell.length_a 57.247 _cell.length_b 69.873 _cell.length_c 79.195 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 B,E,F,G,I 3 1,2 A,C,D,H 3 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -69.873 0 3 'crystal symmetry operation' 3_445 -x-1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 -57.247 -34.9365 39.5975 4 'crystal symmetry operation' 4_444 -x-1,-y-1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 -57.247 -34.9365 -39.5975 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 20 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 H O HOH . A HOH 170 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 H O HOH . A HOH 172 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 H O HOH . A HOH 176 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc5 H O HOH . A HOH 197 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc6 D O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 B OG SER 18 B SER 20 1_555 E MG MG . B MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 B OG1 THR 36 B THR 38 1_555 E MG MG . B MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc9 I O HOH . B HOH 174 1_555 E MG MG . B MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 E MG MG . B MG 178 1_555 F O2G GNP . B GNP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc11 E MG MG . B MG 178 1_555 F O2B GNP . B GNP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc12 E MG MG . B MG 178 1_555 I O HOH . B HOH 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3SEA _atom_sites.fract_transf_matrix[1][1] 0.017468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 202 202 MG MG . D 3 GDP A 1 201 201 GDP GDP . E 2 MG B 1 178 178 MG MG . F 4 GNP B 1 179 179 GNP GNP . G 5 ACT B 1 1 1 ACT ACT . H 6 HOH A 1 2 2 HOH HOH . H 6 HOH A 2 170 5 HOH HOH . H 6 HOH A 3 171 171 HOH HOH . H 6 HOH A 4 172 6 HOH HOH . H 6 HOH A 5 173 7 HOH HOH . H 6 HOH A 6 174 174 HOH HOH . H 6 HOH A 7 175 175 HOH HOH . H 6 HOH A 8 176 8 HOH HOH . H 6 HOH A 9 177 15 HOH HOH . H 6 HOH A 10 178 178 HOH HOH . H 6 HOH A 11 179 17 HOH HOH . H 6 HOH A 12 180 180 HOH HOH . H 6 HOH A 13 181 19 HOH HOH . H 6 HOH A 14 182 20 HOH HOH . H 6 HOH A 15 183 183 HOH HOH . H 6 HOH A 16 184 21 HOH HOH . H 6 HOH A 17 185 185 HOH HOH . H 6 HOH A 18 186 22 HOH HOH . H 6 HOH A 19 187 187 HOH HOH . H 6 HOH A 20 188 23 HOH HOH . H 6 HOH A 21 189 189 HOH HOH . H 6 HOH A 22 190 24 HOH HOH . H 6 HOH A 23 191 191 HOH HOH . H 6 HOH A 24 192 192 HOH HOH . H 6 HOH A 25 193 193 HOH HOH . H 6 HOH A 26 194 194 HOH HOH . H 6 HOH A 27 195 27 HOH HOH . H 6 HOH A 28 196 28 HOH HOH . H 6 HOH A 29 197 29 HOH HOH . H 6 HOH A 30 198 30 HOH HOH . H 6 HOH A 31 199 31 HOH HOH . H 6 HOH A 32 200 33 HOH HOH . H 6 HOH A 33 203 34 HOH HOH . H 6 HOH A 34 204 35 HOH HOH . H 6 HOH A 35 205 205 HOH HOH . H 6 HOH A 36 206 206 HOH HOH . H 6 HOH A 37 207 207 HOH HOH . H 6 HOH A 38 208 208 HOH HOH . H 6 HOH A 39 209 36 HOH HOH . H 6 HOH A 40 210 210 HOH HOH . H 6 HOH A 41 211 38 HOH HOH . H 6 HOH A 42 212 39 HOH HOH . H 6 HOH A 43 213 40 HOH HOH . H 6 HOH A 44 214 214 HOH HOH . H 6 HOH A 45 215 215 HOH HOH . H 6 HOH A 46 216 216 HOH HOH . H 6 HOH A 47 217 217 HOH HOH . H 6 HOH A 48 218 218 HOH HOH . H 6 HOH A 49 219 219 HOH HOH . H 6 HOH A 50 220 220 HOH HOH . H 6 HOH A 51 221 41 HOH HOH . H 6 HOH A 52 222 42 HOH HOH . H 6 HOH A 53 223 43 HOH HOH . H 6 HOH A 54 224 45 HOH HOH . H 6 HOH A 55 225 46 HOH HOH . H 6 HOH A 56 226 48 HOH HOH . H 6 HOH A 57 227 227 HOH HOH . H 6 HOH A 58 228 51 HOH HOH . H 6 HOH A 59 229 53 HOH HOH . H 6 HOH A 60 230 56 HOH HOH . H 6 HOH A 61 231 60 HOH HOH . H 6 HOH A 62 232 232 HOH HOH . H 6 HOH A 63 233 61 HOH HOH . H 6 HOH A 64 234 234 HOH HOH . H 6 HOH A 65 235 235 HOH HOH . H 6 HOH A 66 236 236 HOH HOH . H 6 HOH A 67 237 237 HOH HOH . H 6 HOH A 68 238 63 HOH HOH . H 6 HOH A 69 239 239 HOH HOH . H 6 HOH A 70 240 66 HOH HOH . H 6 HOH A 71 241 241 HOH HOH . H 6 HOH A 72 242 67 HOH HOH . H 6 HOH A 73 243 243 HOH HOH . H 6 HOH A 74 244 244 HOH HOH . H 6 HOH A 75 245 69 HOH HOH . H 6 HOH A 76 246 246 HOH HOH . H 6 HOH A 77 247 70 HOH HOH . H 6 HOH A 78 248 248 HOH HOH . H 6 HOH A 79 249 73 HOH HOH . H 6 HOH A 80 250 74 HOH HOH . H 6 HOH A 81 251 75 HOH HOH . H 6 HOH A 82 252 77 HOH HOH . H 6 HOH A 83 253 78 HOH HOH . H 6 HOH A 84 254 80 HOH HOH . H 6 HOH A 85 255 82 HOH HOH . H 6 HOH A 86 256 83 HOH HOH . H 6 HOH A 87 257 84 HOH HOH . H 6 HOH A 88 258 89 HOH HOH . H 6 HOH A 89 259 90 HOH HOH . H 6 HOH A 90 260 92 HOH HOH . H 6 HOH A 91 261 94 HOH HOH . H 6 HOH A 92 262 97 HOH HOH . H 6 HOH A 93 263 100 HOH HOH . H 6 HOH A 94 264 101 HOH HOH . H 6 HOH A 95 265 103 HOH HOH . H 6 HOH A 96 266 104 HOH HOH . H 6 HOH A 97 267 105 HOH HOH . H 6 HOH A 98 268 107 HOH HOH . H 6 HOH A 99 269 108 HOH HOH . H 6 HOH A 100 270 110 HOH HOH . H 6 HOH A 101 271 113 HOH HOH . H 6 HOH A 102 272 114 HOH HOH . H 6 HOH A 103 273 116 HOH HOH . H 6 HOH A 104 274 117 HOH HOH . H 6 HOH A 105 275 124 HOH HOH . H 6 HOH A 106 276 125 HOH HOH . H 6 HOH A 107 277 127 HOH HOH . H 6 HOH A 108 278 128 HOH HOH . H 6 HOH A 109 279 129 HOH HOH . H 6 HOH A 110 280 130 HOH HOH . H 6 HOH A 111 281 131 HOH HOH . H 6 HOH A 112 282 134 HOH HOH . H 6 HOH A 113 283 135 HOH HOH . H 6 HOH A 114 284 138 HOH HOH . H 6 HOH A 115 285 139 HOH HOH . H 6 HOH A 116 286 142 HOH HOH . H 6 HOH A 117 287 143 HOH HOH . H 6 HOH A 118 288 145 HOH HOH . H 6 HOH A 119 289 146 HOH HOH . H 6 HOH A 120 290 147 HOH HOH . H 6 HOH A 121 291 148 HOH HOH . H 6 HOH A 122 292 149 HOH HOH . H 6 HOH A 123 293 153 HOH HOH . H 6 HOH A 124 294 158 HOH HOH . H 6 HOH A 125 295 159 HOH HOH . H 6 HOH A 126 296 160 HOH HOH . H 6 HOH A 127 297 164 HOH HOH . H 6 HOH A 128 298 167 HOH HOH . H 6 HOH A 129 299 168 HOH HOH . I 6 HOH B 1 170 170 HOH HOH . I 6 HOH B 2 171 1 HOH HOH . I 6 HOH B 3 172 172 HOH HOH . I 6 HOH B 4 173 173 HOH HOH . I 6 HOH B 5 174 3 HOH HOH . I 6 HOH B 6 175 4 HOH HOH . I 6 HOH B 7 176 176 HOH HOH . I 6 HOH B 8 177 177 HOH HOH . I 6 HOH B 9 180 9 HOH HOH . I 6 HOH B 10 181 181 HOH HOH . I 6 HOH B 11 182 182 HOH HOH . I 6 HOH B 12 183 10 HOH HOH . I 6 HOH B 13 184 184 HOH HOH . I 6 HOH B 14 185 11 HOH HOH . I 6 HOH B 15 186 186 HOH HOH . I 6 HOH B 16 187 12 HOH HOH . I 6 HOH B 17 188 188 HOH HOH . I 6 HOH B 18 189 13 HOH HOH . I 6 HOH B 19 190 190 HOH HOH . I 6 HOH B 20 191 14 HOH HOH . I 6 HOH B 21 192 16 HOH HOH . I 6 HOH B 22 193 18 HOH HOH . I 6 HOH B 23 194 25 HOH HOH . I 6 HOH B 24 195 195 HOH HOH . I 6 HOH B 25 196 196 HOH HOH . I 6 HOH B 26 197 197 HOH HOH . I 6 HOH B 27 198 198 HOH HOH . I 6 HOH B 28 199 199 HOH HOH . I 6 HOH B 29 200 200 HOH HOH . I 6 HOH B 30 201 201 HOH HOH . I 6 HOH B 31 202 202 HOH HOH . I 6 HOH B 32 203 203 HOH HOH . I 6 HOH B 33 204 204 HOH HOH . I 6 HOH B 34 205 26 HOH HOH . I 6 HOH B 35 206 32 HOH HOH . I 6 HOH B 36 207 37 HOH HOH . I 6 HOH B 37 208 44 HOH HOH . I 6 HOH B 38 209 209 HOH HOH . I 6 HOH B 39 210 47 HOH HOH . I 6 HOH B 40 211 211 HOH HOH . I 6 HOH B 41 212 212 HOH HOH . I 6 HOH B 42 213 213 HOH HOH . I 6 HOH B 43 214 49 HOH HOH . I 6 HOH B 44 215 50 HOH HOH . I 6 HOH B 45 216 52 HOH HOH . I 6 HOH B 46 217 54 HOH HOH . I 6 HOH B 47 218 55 HOH HOH . I 6 HOH B 48 219 57 HOH HOH . I 6 HOH B 49 220 58 HOH HOH . I 6 HOH B 50 221 221 HOH HOH . I 6 HOH B 51 222 222 HOH HOH . I 6 HOH B 52 223 223 HOH HOH . I 6 HOH B 53 224 224 HOH HOH . I 6 HOH B 54 225 225 HOH HOH . I 6 HOH B 55 226 226 HOH HOH . I 6 HOH B 56 227 59 HOH HOH . I 6 HOH B 57 228 228 HOH HOH . I 6 HOH B 58 229 229 HOH HOH . I 6 HOH B 59 230 230 HOH HOH . I 6 HOH B 60 231 231 HOH HOH . I 6 HOH B 61 232 62 HOH HOH . I 6 HOH B 62 233 233 HOH HOH . I 6 HOH B 63 234 64 HOH HOH . I 6 HOH B 64 235 65 HOH HOH . I 6 HOH B 65 236 68 HOH HOH . I 6 HOH B 66 237 71 HOH HOH . I 6 HOH B 67 238 238 HOH HOH . I 6 HOH B 68 239 72 HOH HOH . I 6 HOH B 69 240 240 HOH HOH . I 6 HOH B 70 241 76 HOH HOH . I 6 HOH B 71 242 242 HOH HOH . I 6 HOH B 72 243 79 HOH HOH . I 6 HOH B 73 244 81 HOH HOH . I 6 HOH B 74 245 245 HOH HOH . I 6 HOH B 75 246 85 HOH HOH . I 6 HOH B 76 247 247 HOH HOH . I 6 HOH B 77 248 86 HOH HOH . I 6 HOH B 78 249 249 HOH HOH . I 6 HOH B 79 250 250 HOH HOH . I 6 HOH B 80 251 251 HOH HOH . I 6 HOH B 81 252 252 HOH HOH . I 6 HOH B 82 253 87 HOH HOH . I 6 HOH B 83 254 88 HOH HOH . I 6 HOH B 84 255 91 HOH HOH . I 6 HOH B 85 256 93 HOH HOH . I 6 HOH B 86 257 95 HOH HOH . I 6 HOH B 87 258 96 HOH HOH . I 6 HOH B 88 259 98 HOH HOH . I 6 HOH B 89 260 99 HOH HOH . I 6 HOH B 90 261 102 HOH HOH . I 6 HOH B 91 262 106 HOH HOH . I 6 HOH B 92 263 109 HOH HOH . I 6 HOH B 93 264 111 HOH HOH . I 6 HOH B 94 265 112 HOH HOH . I 6 HOH B 95 266 115 HOH HOH . I 6 HOH B 96 267 118 HOH HOH . I 6 HOH B 97 268 119 HOH HOH . I 6 HOH B 98 269 120 HOH HOH . I 6 HOH B 99 270 121 HOH HOH . I 6 HOH B 100 271 122 HOH HOH . I 6 HOH B 101 272 123 HOH HOH . I 6 HOH B 102 273 126 HOH HOH . I 6 HOH B 103 274 132 HOH HOH . I 6 HOH B 104 275 133 HOH HOH . I 6 HOH B 105 276 136 HOH HOH . I 6 HOH B 106 277 137 HOH HOH . I 6 HOH B 107 278 140 HOH HOH . I 6 HOH B 108 279 141 HOH HOH . I 6 HOH B 109 280 144 HOH HOH . I 6 HOH B 110 281 150 HOH HOH . I 6 HOH B 111 282 151 HOH HOH . I 6 HOH B 112 283 152 HOH HOH . I 6 HOH B 113 284 154 HOH HOH . I 6 HOH B 114 285 155 HOH HOH . I 6 HOH B 115 286 156 HOH HOH . I 6 HOH B 116 287 157 HOH HOH . I 6 HOH B 117 288 161 HOH HOH . I 6 HOH B 118 289 162 HOH HOH . I 6 HOH B 119 290 163 HOH HOH . I 6 HOH B 120 291 165 HOH HOH . I 6 HOH B 121 292 166 HOH HOH . I 6 HOH B 122 293 169 HOH HOH . I 6 HOH B 123 294 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . G 5 -63.707 -25.269 5.974 1 54.96 ? C ACT 1 B 1 HETATM 2 O O ACT . . . G 5 -64.819 -25.841 5.916 1 55.6 ? O ACT 1 B 1 HETATM 3 O OXT ACT . . . G 5 -63.454 -24.472 5.039 1 51.35 ? OXT ACT 1 B 1 HETATM 4 C CH3 ACT . . . G 5 -62.739 -25.527 7.096 1 51.09 ? CH3 ACT 1 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #